Fluorescent-labeled single-strand ATP aptamer DNA: Chemo- and enantio-selectivity in sensing adenosine

Biochemical and Biophysical Research Communications

Volumn 360, Issue 2, 2007, Pages 459-463

  Urata, Hidehito ^a   Nomura, Kanba ^a   Wada, Shun ichi ^a   Akagi, Masao ^a  

^a OSAKA MEDICAL COLLEGE   (Japan)

Author keywords

Adenosine; Aptamer; DNA; Enantiomeric selectivity; FRET; Sensing

Indexed keywords

ADENOSINE; ADENOSINE TRIPHOSPHATE; APTAMER; DNA; FLUORESCENT DYE; RIBONUCLEOSIDE; SINGLE STRANDED DNA;

ARTICLE; ENANTIOSELECTIVITY; FLUORESCENCE RESONANCE ENERGY TRANSFER; GENE SEQUENCE; GENE STRUCTURE; GENE SYNTHESIS; GENETIC PROCEDURES; LIGAND BINDING; PRIORITY JOURNAL; TEMPERATURE; TITRIMETRY;

ADENOSINE; ADENOSINE TRIPHOSPHATE; APTAMERS, NUCLEOTIDE; FLUORESCENCE RESONANCE ENERGY TRANSFER; ISOMERISM; SENSITIVITY AND SPECIFICITY; STAINING AND LABELING;

EID: 34447100298     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2007.06.075     Document Type: Article

References (22)

1. Ellington A.D., and Szostak J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 346 (1990) 818-822
2. Green R., Ellington A.D., Bartel D.P., and Szostak J.W. In vitro genetic analysis: selection and amplification of rare functional nucleic acids. Methods 2 (1991) 75-86
3. Famulok M., and Szostak J.W. In-vitro-selection of specific ligand-binder nucleic acids. Angew. Chem. Int. Ed. 31 (1992) 979-988
4. Huizenga D.E., and Szostak J.W. A DNA aptamer that binds adenosine and ATP. Biochemistry 34 (1995) 656-665
5. Lin C.H., and Patel D.J. Structural basis of DNA folding and recognition in an AMP-DNA aptamer complex: distinct architectures but common recognition motifs for DNA and RNA aptamers complexed to AMP. Chem. Biol. 4 (1997) 817-832
6. Levy M., and Ellington A.D. ATP-dependent allosteric DNA enzymes. Chem. Biol. 9 (2002) 417-426
7. Stojanovic M.N., and Kolpashchikov D.M. Modular aptameric sensors. J. Am. Chem. Soc. 126 (2004) 9266-9270
8. Achenbach J.C., Nutiu R., and Li Y. Structure-switching allosteric deoxyribozymes. Anal. Chim. Acta 534 (2005) 41-51
9. Cong X., and Nilsen-Hamilton M. Allosteric aptamers: targeted reversibly attenuated probes. Biochemistry 44 (2005) 7945-7954
10. Stojanovic M.N., de Prada P., and Landry D.W. Fluorescent sensors based on aptamer self-assembly. J. Am. Chem. Soc. 122 (2000) 11547-11548
11. Ohtani Y., Yamana K., and Nakano H. Molecular sensing by pyrene excimer signal of fluorescent DNA aptamer. Nucleic Acids Res. Suppl. 2 (2002) 169-170
12. Nutiu R., and Li Y. Structure-switching signaling aptamers. J. Am. Chem. Soc. 125 (2003) 4771-4778
13. Nutiu R., and Li Y. In vitro selection of structure-switching signaling aptamers. Angew. Chem. Int. Ed. 44 (2005) 1061-1065 S1061/1061-S1061/1063
14. Kamekawa N., Shimomura Y., Nakamura M., and Yamana K. Pyrene-modified DNA aptamer as a fluorescent biosensor with high affinity and specificity for ATP sensing. Chem. Lett. 35 (2006) 660-661
15. Sapsford K.E., Berti L., and Medintz I.L. Materials for fluorescence resonance energy transfer analysis: beyond traditional donor-acceptor combinations. Angew. Chem. Int. Ed. 45 (2006) 4562-4588
16. Akagi M., Omae D., Tamura Y., Ueda T., Kumashiro T., and Urata H. A practical synthesis of l-ribose. Chem. Pharm. Bull. 50 (2002) 866-868
17. Recondo E.F., and Rinderknecht H. A new, simple, synthesis of 1-O-acetyl-2,3,5-tri-O-benzoyl-b-d-ribose. Helv. Chim. Acta. 42 (1959) 1171-1173
18. Vorbrueggen H., and Krolikiewicz K. New catalysts for nucleoside synthesis. Angew. Chem. Int. Ed. 14 (1975) 421-422
19. Urata H., Hara H., Hirata Y., Ohmoto N., and Akagi M. Synthesis and structural characterization of diastereomeric isomers of RNA trimer adenylyl(3′-5′)adenylyl(3′-5′)adenosine. Tetrahedron: Asymmetry 16 (2005) 2908-2917
20. In: Fasman G.D. (Ed). Handbook of biochemistry and molecular biology. second ed. Nucleic Acids vol. 1 (1975), CRC press, Boca Raton, FL 589
21. Michaud M., Jourdan E., Villet A., Ravel A., Grosset C., and Peyrin E. A DNA aptamer as a new target-specific chiral selector for HPLC. J. Am. Chem. Soc. 125 (2003) 8672-8679
22. Michaud M., Jourdan E., Ravelet C., Villet A., Ravel A., Grosset C., and Peyrin E. Immobilized DNA aptamers as target-specific chiral stationary phases for resolution of nucleoside and amino acid derivative enantiomers. Anal. Chem. 76 (2004) 1015-1020