Evolutionary relationship between marble trout of the northern and the southern Adriatic basin

Molecular Phylogenetics and Evolution

Volumn 59, Issue 3, 2011, Pages 761-766

  Pustovrh, G ^a   Susnik Bajec S ^a   Snoj, A ^a  

^a UNIVERSITY OF LJUBLJANA   (Slovenia)

Author keywords

Mitochondrial DNA; Multilocus phylogeny; Nuclear DNA; S. marmoratus; Salmo trutta

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CLASSIFICATION; DNA SEQUENCE; GENETICS; PHYLOGENY; TROUT;

ANIMALS; DNA, MITOCHONDRIAL; PHYLOGENY; SEQUENCE ANALYSIS, DNA; TROUT;

SALMO MARMORATUS; SALMO TRUTTA; SALMONIDAE;

EID: 79955471840     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2011.03.024     Document Type: Article

References (36)

1. Apostolidis A.P., Triantaphyllidis C., Kouvatsi A., Economidis P.S. Mitochondrial DNA sequence variation and phylogeography among Salmo trutta L. (Greek brown trout) populations. Molecular Ecology 1997, 6:531-542.
2. Bernatchez L. The evolutionary history of brown trout (Salmo trutta L.) inferred from phylogeographic, nested clade, and mismatch analyses of mitochondrial DNA variation. Evolution 2001, 55:351-379.
3. Bernatchez L., Guyomard R., Bonhomme F. DNA sequence variation of the mitochondrial control region among geographically and morphologically remote European brown trout Salmo trutta populations. Molecular Ecology 1992, 1:161-173.
4. Berrebi P., Povž M., Jesenšek D., Cattaneo-Berrebi G., Crivelli A.J. The genetic diversity of native, stocked and hybrid populations of marble trout in the Soca river, Slovenia. Heredity 2000, 85:277-287.
5. Cortey M., Pla C., Garcia-Marin J.L. Historical biogeography of Mediterranean trout. Molecular Phylogenetics and Evolution 2004, 33:831-844.
6. Delling B. Morphological distinction of the marble trout, Salmo marmoratus, in comparison to marbled Salmo trutta from River Otra, Norway. Cybium 2002, 26:283-300.
7. Dorofeeva E.A., Sidorovski M., Petrovski N. Osteological peculiarities of Ohrid trouts (Salmo letnica) with reference to their taxonomy. Zoologichesky Zhurnal 1983, 62:1691-1700.
8. Fumagalli L., Snoj A., Jesenšek D., Balloux F., Jug T., Duron O., Brossier F., Crivelli A.J., Berrebi P. Extreme genetic differentiation among the remnant populations of marble trout (Salmo marmoratus) in Slovenia. Molecular Ecology 2002, 11:2711-2716.
9. Giuffra E., Bernatchez L., Guyomard R. Mitochondrial control region and protein-coding genes sequence variation among phenotypic forms of brown trout Salmo trutta from northern Italy. Molecular Ecology 1994, 3:161-171.
10. Jug T., Berrebi P., Snoj A. Distribution of non-native trout in Slovenia and their introgression with native trout populations as observed through microsatellite DNA analysis. Biological Conservation 2005, 123:381-388.
11. Jug T., Dovč P., Pohar J., Snoj A. RAPD analysis as a tool for discriminating marble trout from hybrids (marble trout×brown trout) in the zones of hybridization. Journal of Animal Breeding and Genetics 2004, 121:156-162.
12. Maddison W.P. Gene trees in species trees. Systematic Biology 1997, 46:523-536.
13. Meraner A., Barić S., Pelster B., Dalla Via J. Microsatellite DNA data point to extensive but incomplete admixture in a marble and brown trout hybridisation zone. Conservation Genetics 2010, 11:985-998.
14. Miller S.A., Dykes D.D., Polesky H.F. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Research 1988, 16:1215.
15. Nei M., Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Molecular Biology and Evolution 1986, 3:418-426.
16. Nylander J.A.A., Ronquist F., Huelsenbeck J.P., Nieves-Aldrey J.L. Bayesian phylogenetic analysis of combined data. Systematic Biology 2004, 53:47-67.
17. Nylander J.A.A., Wilgenbusch J.C., Warren D.L., Swofford D.L. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 2008, 24:581-583.
18. Molecular Evolution: A Phylogenetic Approach 2000, Blackwell Science, Oxford, UK. R. Page, E. Holmes (Eds.).
19. Posada D. JModelTest: phylogenetic model averaging. Molecular Biology and Evolution 2008, 25:1253-1256.
20. Pustovrh, G., Snoj, A., Sušnik, B.S., 2010. A set of SNPs enabling identification of trouts and their hybrids in the genus Salmo. Conservation Genetics Resources doi: doi:10.1007/s12686-010-9310-6.
21. Razpet A., Susnik S., Jug T., Snoj A. Genetic variation among trout in the River Neretva basin, Bosnia and Herzegovina. Journal of Fish Biology 2007, 70:94-110.
22. Renoult J.P., Geniez P., Bacquet P., Benoit L., Crochet P.A. Morphology and nuclear markers reveal extensive mitochondrial introgressions in the Iberian Wall Lizard species complex. Molecular Ecology 2009, 18:4298-4315.
23. Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
24. Ryynanen H.J., Primmer C.R. Single nucleotide polymorphism (SNP) discovery in duplicated genomes: intron-primed exon-crossing (IPEC) as a strategy for avoiding amplification of duplicated loci in Atlantic salmon (Salmo salar) and other salmonid fishes. BMC Genomics 2006, 7:11.
25. Skaala O., Solberg G. Biochemical genetic variability and taxonomy of a marmorated salmonid in River Otra, Norway. Nordic Journal of Freshwater Research 1997, 73:3-12.
26. Snoj A., Glamuzina B., Razpet A., Zablocki J., Bogut I., Lerceteau-Kohler E., Pojskič N., Sušnik S. Resolving taxonomic uncertainties using molecular systematics: Salmo dentex and the Balkan trout community. Hydrobiologia 2010, 651:199-212.
27. Snoj A., Jug T., Melkič E., Sušnik S., Pohar J., Dovč P., Jesenšek D., Budihna N. Mitochondrial and microsatellite DNA analysis of marble trout in Slovenia. Journal of Freshwater Biology (Quaderni ETP) 2000, 29:5-11.
28. Snoj, A., Marič, S., Berrebi, P., Crivelli, A.J., Shumka, S., Sušnik, S., 2009. Genetic architecture of trout from Albania as revealed by mtDNA control region variation. Genetics Selection Evolution 41.
29. Splendiani A., Giovannotti M., Cerioni P.N., Caniglia M.L., Caputo V. Phylogeographic inferences on the native brown trout mtDNA variation in central Italy. Italian Journal of Zoology 2006, 73:179-189.
30. Sušnik S., Sivka U., Snoj A. A set of nuclear DNA markers diagnostic for marble trout, Salmo marmoratus. Aquaculture 2008, 285:260-263.
31. Sušnik S., Snoj A., Wilson I.F., Mrdak D., Weiss S. Historical demography of brown trout (Salmo trutta) in the Adriatic drainage including the putative S. Letnica endemic to Lake Ohrid. Molecular Phylogenetics and Evolution 2007, 44:63-76.
32. Swofford, D.L. (Ed.), 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). Version 4, Sunderland, Massachusetts.
33. Tamura, K., Dudley, J., Nei, M., Kumar, S., 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24, 1596-1599.
34. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL-W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 1994, 22:4673-4680.
35. Wiens J.J., Kuczynski C.A., Stephens P.R. Discordant mitochondrial and nuclear gene phylogenies in emydid turtles: implications for speciation and conservation. Biological Journal of the Linnean Society 2010, 99:445-461.
36. Zwickl, D.J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation. The University of Texas at Austin.