A set of nuclear DNA markers diagnostic for marble trout, Salmo marmoratus

Aquaculture

Volumn 285, Issue 1-4, 2008, Pages 260-263

  Sušnik, Simona ^a   Sivka, Urška ^a   Snoj, Aleš ^a  

^a UNIVERSITY OF LJUBLJANA   (Slovenia)

Author keywords

Brown trout; Genotyping; Introgressive hybridization; Marble trout; RFLP; Salmo marmoratus; Single nucleotide polymorphism

Indexed keywords

ALLELE; CONSERVATION GENETICS; GENETIC MARKER; HYBRIDIZATION; INTRODUCED SPECIES; INTROGRESSION; POLYMORPHISM; POPULATION GENETICS; SALMONID; SPECIES CONSERVATION;

ADRIATIC SEA; EURASIA; EUROPE; MEDITERRANEAN SEA; SLOVENIA; SOUTHERN EUROPE;

ONCORHYNCHUS; PISCES; SALMO MARMORATUS; SALMO SALAR; SALMO TRUTTA; SALMONIDAE;

EID: 55949113234     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2008.08.009     Document Type: Article

References (27)

1. Allendorf F.W., Leary R.F., Spruell P., and Wenburg J.K. The problems with hybrids: setting conservation guidelines. Trends Ecol. Evol. 16 (2001) 613-622
2. Antunes A., Templeton A.R., Guyomard R., and Alexandrino P. The role of nuclear genes in intraspecific evolutionary inference: genealogy of the transferrin gene in the brown trout. Mol. Biol. Evol. 19 (2002) 1272-1287
3. Berrebi P., Povž M., Jesenšek D., Cattaneo-Berrebi G., and Crivelli A.J. The genetic diversity of native, stocked and hybrid populations of marble trout in the Soča river, Slovenia. Heredity 85 (2000) 277-287
4. Boecken W.J., and Howard D.J. Genetic analysis of hybrid zones: numbers of markers and power of resolution. Ecology 78 (1997) 2611-2616
5. Crivelli A., Poizat G., Berrebi P., Jesenšek D., and Rubin J.F. Conservation biology applied to fish: the example of a project for rehabilitating the marble trout (Salmo marmoratus) in Slovenia. Cybium 24 (2000) 211-230
6. Delling B., Crivelli A.J., Rubin J.F., and Berrebi P. Morphological variation in hybrids between Salmo marmoratus and alien Salmo species in the Volarja stream, Soca River basin, Slovenia. J. Fish Biol. 57 (2000) 1199-1212
7. Epifanio J., and Nielsen J. The role of hybridization in the distribution, conservation and management of aquatic species. Rev. Fish Biol. Fish. 10 (2000) 245-251
8. Ford M.J. Effects of natural selection on patterns of DNA sequence variation at the transferrin, somatolactin, and p53 genes within and among chinook salmon (Oncorhynchus tshawytscha) populations. Mol. Ecol. 9 (2000) 843-855
9. Frankham R., Ballou J.D., and Briscoe D.A. A Primer of Conservation Genetics (2004), University Press, Cambridge 220 pp.
10. Fumagalli L., Snoj A., Jesenšek D., Balloux F., Jug T., Duron O., Brossier F., Crivelli A.J., and Berrebi P. Extreme genetic differentiation among the remnant populations of marble trout (Salmo marmoratus) in Slovenia. Mol. Ecol. 11 (2002) 2711-2716
11. Gharbi K., Gautier A., Danzmann R.G., Gharbi S., Sakamoto T., Hoyheim B., Taggart J.B., Cairney M., Powell R., Krieg F., Okamoto N., Ferguson M.M., Holm L.E., and Guyomard R. A linkage map for brown trout (Salmo trutta): chromosome homologies and comparative genome organization with other salmonid fish. Genetics 172 (2006) 2405-2419
12. Goudet J. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3) (2001). http://www2.unil.ch/popgen/softwares/fstat.htm Available from http://www2.unil.ch/popgen/softwares/fstat.htm
13. Jug T., Dovč P., Pohar J., and Snoj A. RAPD analysis as a tool for discriminating marble trout from hybrids (marble trout × brown trout) in the zones of hybridization. J. Anim. Breed. Genet. 121 (2004) 156-162
14. Jug T., Berrebi P., and Snoj A. Distribution of non-native trout in Slovenia and their introgression with native trout populations as observed through microsatellite DNA analysis. Biol. Conserv. 123 (2005) 381-388
15. Ke X., Collins A.C., and Ye S. PIRA PCR designer for restriction analysis of single nucleotide polymorphisms. Bioinformatics 17 (2001) 838-839
16. Marić S., Sušnik S., Simonović P., and Snoj A. Phylogeographic study of brown trout from Serbia, based on mitochondrial DNA control region analysis. Genet. Sel. Evol. 38 (2006) 411-430
17. McMeel O.M., Hoey E.M., and Ferguson A. Partial nucleotide sequences, and routine typing by polymerase chain reaction-restriction fragment length polymorphism, of the brown trout (Salmo trutta) lactate dehydrogenase, LDH-C1*90 and *100 alleles. Mol. Ecol. 10 (2001) 29-34
18. Meraner A., Baric S., Pelster B., and Dalla Via J. Trout (Salmo trutta) mitochondrial DNA polymorphism in the centre of the marble trout distribution area. Hydrobiologia 579 (2007) 337-349
19. Miller S.A., Dykes D.D., and Polesky H.F. A simple salting out procedure from human nucleated cells. Nucleic Acids Res. 16 (1988) 1215
20. Povž M., Jesenšek D., Berrebi P., and Crivelli A.J. The marble trout, Salmo trutta marmoratus, Cuvier 1817 in the Soča river basin, Slovenia (1996), La Tour du Valat, Le Sambuc 65 pp.
21. Rapley R., and Harbron S. Molecular Analysis and Genome Discovery (2004), Wiley, Chichester 388 pp.
22. Razpet A., Sušnik S., Jug T., and Snoj A. Genetic variation among trout in the River Neretva basin, Bosnia and Herzegovina. J. Fish Biol. 70 Suppl. A (2007) 94-110
23. Rozman, T., Dovč, P., Marić, S., Kokalj-Vokač, N., Erjavec-Škerget, A., Rab, P., Snoj, A., in press. Multiple evidences for two transferrin (TF) loci in Salmo trutta genome. Anim. Genet. doi:10.1111/j.1365-2052.2008.01768.x.
24. Scribner K.T., Page K.S., and Bartron M.L. Hybridization in freshwater fishes: a review of case studies and cytonuclear methods of biological inference. Rev. Fish Biol. Fish. 10 (2000) 293-323
25. Sušnik S., Snoj A., Wilson I., Mrdak D., and Weiss S. Historical demography of brown trout (Salmo trutta) in the Adriatic drainage including the putative S. letnica endemic to lake Ohrid. Mol. Phylogenet. Evol. 44 (2007) 63-76
26. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4637-4680
27. Zaragüeta-Bagilsa R., Lavouéb S., Tillierc A., Bonillob C., and Lecointreb G. Assessment of otocephalan and protacanthopterygian concepts in the light of multiple molecular phylogenies. C. R. Biol. 325 (2002) 1191-1207