-
1
-
-
1842717950
-
Genomic analysis of the nuclear receptor family: New insights into structure, regulation, and evolution from the rat genome
-
DOI 10.1101/gr.2160004
-
Zhang Z, Burch PE, Cooney AJ, Lanz RB, Pereira FA, Wu J, Gibbs RA, Weinstock G, Wheeler DA 2004 Genomic analysis of the nuclear receptor family: new insights into structure, regulation, and evolution from the rat genome. Genome Res 14:580-590 (Pubitemid 38500229)
-
(2004)
Genome Research
, vol.14
, Issue.4
, pp. 580-590
-
-
Zhang, Z.1
Burch, P.E.2
Cooney, A.J.3
Lanz, R.B.4
Pereira, F.A.5
Wu, J.6
Gibbs, R.A.7
Weinstock, G.8
Wheeler, D.A.9
-
2
-
-
0035479253
-
How many nuclear hormone receptors are there in the human genome?
-
DOI 10.1016/S0168-9525(01)02417-9, PII S0168952501024179
-
Robinson-Rechavi M, Carpentier AS, Duffraisse M, Laudet V 2001 How many nuclear hormone receptors are there in the human genome? Trends Genetics 17:554-556 (Pubitemid 32918290)
-
(2001)
Trends in Genetics
, vol.17
, Issue.10
, pp. 554-556
-
-
Robinson-Rechavi, M.1
Carpentier, A.-S.2
Duffraisse, M.3
Laudet, V.4
-
3
-
-
0012473279
-
The nuclear receptor superfamily: The second decade
-
Mangelsdorf DJ, Thummel C, Beato M, Herrlich P, Schütz G, Ume-sono K, Blumberg B, Kastner P, Mark M, Chambon P, Evans RM 1995 The nuclear receptor superfamily: the second decade. Cell 83:835-839
-
(1995)
Cell.
, vol.83
, pp. 835-839
-
-
Mangelsdorf, D.J.1
Thummel, C.2
Beato, M.3
Herrlich, P.4
Schütz, G.5
Ume-sono, K.6
Blumberg, B.7
Kastner, P.8
Mark, M.9
Chambon, P.10
Evans, R.M.11
-
4
-
-
51249118917
-
An amphioxus orthologue of the estrogen receptor that does not bind estradiol: Insights into estrogen receptor evolution
-
Paris M, Pettersson K, Schubert M, Bertrand S, Pongratz I, Escriva H, Laudet V 2008 An amphioxus orthologue of the estrogen receptor that does not bind estradiol: insights into estrogen receptor evolution. BMC Evol Biol 25;8:219
-
(2008)
BMC Evol. Biol.
, vol.25
, Issue.8
, pp. 219
-
-
Paris, M.1
Pettersson, K.2
Schubert, M.3
Bertrand, S.4
Pongratz, I.5
Escriva, H.6
Laudet, V.7
-
5
-
-
33745636105
-
The evolution of mineralocorticoid receptors
-
DOI 10.1210/me.2005-0247
-
Hu X, Funder JW 2006 The evolution of mineralocorticoid receptors. Mol Endocrinol 20:1471-1478 (Pubitemid 43967557)
-
(2006)
Molecular Endocrinology
, vol.20
, Issue.7
, pp. 1471-1478
-
-
Hu, X.1
Funder, J.W.2
-
6
-
-
0031565966
-
Steroid receptor phylogeny and vertebrate origins
-
DOI 10.1016/S0303-7207(97)00207-4, PII S0303720797002074
-
Baker ME 1997 Steroid receptor phylogeny and vertebrate origins. Mol Cell Endocrinol 135:101-107 (Pubitemid 28039427)
-
(1997)
Molecular and Cellular Endocrinology
, vol.135
, Issue.2
, pp. 101-107
-
-
Baker, M.E.1
-
7
-
-
0035064760
-
Adrenal and sex steroid receptor evolution: Environmental implications
-
DOI 10.1677/jme.0.0260119
-
Baker ME 2001 Adrenal and sex steroid receptor evolution: environmental implications. J Mol Endocrinol 26:119-125 (Pubitemid 32266187)
-
(2001)
Journal of Molecular Endocrinology
, vol.26
, Issue.2
, pp. 119-125
-
-
Baker, M.E.1
-
8
-
-
33645691679
-
Evolution of hormone-receptor complexity by molecular exploitation
-
Bridgham JT, Carroll SM, Thornton JW 2006 Evolution of hormone-receptor complexity by molecular exploitation. Science 312:97-101
-
(2006)
Science
, vol.312
, pp. 97-101
-
-
Bridgham, J.T.1
Carroll, S.M.2
Thornton, J.W.3
-
10
-
-
0031451570
-
Evolution of the nuclear receptor superfamily: Early diversification from an ancestral orphan receptor
-
DOI 10.1677/jme.0.0190207
-
Laudet V 1997 Evolution of the nuclear receptor superfamily: early diversification from an ancestral orphan receptor. J Mol Endocrinol 19:207-226 (Pubitemid 28023157)
-
(1997)
Journal of Molecular Endocrinology
, vol.19
, Issue.3
, pp. 207-226
-
-
Laudet, V.1
-
11
-
-
0141431993
-
Resurrecting the ancestral steroid receptor: Ancient origin of estrogen signaling
-
DOI 10.1126/science.1086185
-
Thornton JW, Need E, Crews D 2003 Resurrecting the ancestral steroid receptor: ancient origin of estrogen signaling. Science 301:1714-1717 (Pubitemid 37174363)
-
(2003)
Science
, vol.301
, Issue.5640
, pp. 1714-1717
-
-
Thornton, J.W.1
Need, E.2
Crews, D.3
-
12
-
-
68149176813
-
Evolution of gene function and regulatory control after whole-ge-nomeduplication: Comparative analysesinvertebrates
-
Kassahn KS, Dang VT, Wilkins SJ, Perkins AC, Ragan MA 2009 Evolution of gene function and regulatory control after whole-ge-nomeduplication: comparative analysesinvertebrates. Genome Res 19:1404-1418
-
(2009)
Genome Res.
, vol.19
, pp. 1404-1418
-
-
Kassahn, K.S.1
Dang, V.T.2
Wilkins, S.J.3
Perkins, A.C.4
Ragan, M.A.5
-
13
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar RC 2004 MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
14
-
-
36448991500
-
ClustalW and ClustalX version 2
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG 2007 ClustalW and ClustalX version 2. Bioinformatics 23:2947-2948
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
15
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
DOI 10.1093/bioinformatics/btg180
-
Ronquist F, Huelsenbeck JP 2003 MrBayes3:Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574 (Pubitemid 37038874)
-
(2003)
Bioinformatics
, vol.19
, Issue.12
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
16
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones DT, Taylor WR, Thornton JM 1992 The rapid generation of mutation data matrices from protein sequences. Comp Appl Biosci 8:275-282
-
(1992)
Comp. Appl. Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
17
-
-
0242578620
-
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
-
DOI 10.1080/10635150390235520
-
Guindon S, Gascuel O 2003 A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704 (Pubitemid 37365050)
-
(2003)
Systematic Biology
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
19
-
-
1642341403
-
Bayesian phylogenetic analysis of combined data
-
DOI 10.1080/10635150490264699
-
Nylander JA, Ronquist F, Huelsenbeck JP, Nieves-Aldrey JL 2004 Bayesian phylogenetic analysis of combined data. Syst Biol 53:47-67 (Pubitemid 38370420)
-
(2004)
Systematic Biology
, vol.53
, Issue.1
, pp. 47-67
-
-
Nylander, J.A.A.1
Ronquist, F.2
Huelsenbeck, J.P.3
Nieves-Aldrey, J.L.4
-
20
-
-
71549150203
-
Mesquite: A modular system for evolutionary analysis
-
Maddison WP, Maddison DR 2009 Mesquite: a modular system for evolutionary analysis. Version 2.71. In: http://mesquiteproject.org
-
(2009)
Version
, vol.2
, pp. 71
-
-
Maddison, W.P.1
Maddison, D.R.2
-
21
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond AJ, Rambaut A 2007 BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 8;7:214
-
(2007)
BMC Evol. Biol.
, vol.87
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
22
-
-
33645790071
-
Simple and accurate estimation of ancestral protein sequences
-
Hall BG 2006 Simple and accurate estimation of ancestral protein sequences. Proc Natl Acad Sci USA 103:5431-5436
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 5431-5436
-
-
Hall, B.G.1
-
23
-
-
78649828324
-
Molecular cloning, characterization, and chromosome mapping of reptilian estrogen receptors
-
Katsu Y, Matsubara K, Kohno S, Matsuda Y, Toriba M, Oka K, Guillette Jr LJ, Ohta Y, Iguchi T 2010 Molecular cloning, characterization, and chromosome mapping of reptilian estrogen receptors. Endocrinology 151:5710-5720
-
(2010)
Endocrinology
, vol.151
, pp. 5710-5720
-
-
Katsu, Y.1
Matsubara, K.2
Kohno, S.3
Matsuda, Y.4
Toriba, M.5
Oka, K.6
Guillette Jr., L.J.7
Ohta, Y.8
Iguchi, T.9
-
24
-
-
0035826690
-
Evolution of vertebrate steroid receptors from an ancestral estrogen receptor by ligand exploitation and serial genome expansions
-
DOI 10.1073/pnas.091553298
-
Thornton JW 2001 Evolution of vertebrate steroid receptors from an ancestral estrogen receptor by ligand exploitation and serial genome expansions. Proc Natl Acad Sci USA 98:5671-5676 (Pubitemid 32435700)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.10
, pp. 5671-5676
-
-
Thornton, J.W.1
-
25
-
-
26444603772
-
Two rounds of whole genome duplication in the ancestral vertebrate
-
Dehal P, Boore JL 2005 Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol 3:e314
-
(2005)
PLoS Biol.
, vol.3
-
-
Dehal, P.1
Boore, J.L.2
-
26
-
-
7244259101
-
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
-
DOI 10.1038/nature03025
-
Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biémont C, Skalli Z, Cattolico L, Poulain J, De Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau JP, Gouzy J, Parra G, Lardier G, Chapple C, McKernan KJ, McEwan P, Bosak S, Kellis M, Volff JN, Guigó R, Zody MC, Mesirov J, Lind-blad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quétier F, Saurin W, Scarpelli C, Wincker P, Lander ES, Weissenbach J, Crollius H 2004 Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431:946-957 (Pubitemid 39434410)
-
(2004)
Nature
, vol.431
, Issue.7011
, pp. 946-957
-
-
Jatllon, O.1
Aury, J.-M.2
Brunet, F.3
Petit, J.-L.4
Stange-Thomann, N.5
Maucell, E.6
Bouneau, L.7
Fischer, C.8
Ozouf-Costaz, C.9
Bernot, A.10
Nicaud, S.11
Jaffe, D.12
Fisher, S.13
Lutfalla, G.14
Dossat, C.15
Segurens, B.16
Dasilva, C.17
Salanoubat, M.18
Levy, M.19
Houdet, N.20
Castellano, S.21
Anthouard, V.22
Jubin, C.23
Castelli, V.24
Katinka, M.25
Vacherie, B.26
Blemont, C.27
Skalli, Z.28
Cattolico, L.29
Poulain, J.30
De Berardinis, V.31
Cruaud, C.32
Dupart, S.33
Brottler, P.34
Coutanceau, J.-P.35
Gouzy, J.36
Parra, G.37
Lardier, G.38
Chapple, C.39
McKernan, K.J.40
McEwan, P.41
Bosak, S.42
Kellis, M.43
Volff, J.-N.44
Gulgo, R.45
Zody, M.C.46
Mesirov, J.47
Lindblad-Toh, K.48
Birren, B.49
Nusbaum, C.50
Kahn, D.51
Robinson-Rechavi, M.52
Laudet, V.53
Schachter, V.54
Quetler, F.55
Saurin, W.56
Scarpeill, C.57
Wincker, P.58
Lander, E.S.59
Weissenbach, J.60
Roest Crollius, H.61
more..
-
27
-
-
4944258189
-
Evolutionary genomics of nuclear receptors: From twenty-five ancestral genes to derived endocrine systems
-
DOI 10.1093/molbev/msh200
-
Bertrand S, Brunet FG, Escriva H, Parmentier G, Laudet V, Rob-inson-Rechavi M 2004 Evolutionary genomics of nuclear receptors: from twenty-five ancestral genes to derived endocrine systems. Mol Biol Evol 21:1923-1937 (Pubitemid 39331639)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.10
, pp. 1923-1937
-
-
Bertrand, S.1
Brunet, F.G.2
Escriva, H.3
Parmentier, G.4
Laudet, V.5
Robinson-Rechavi, M.6
-
28
-
-
0034617130
-
Activating mineralocorticoid receptor mutation in hypertension exacerbated by pregnancy
-
DOI 10.1126/science.289.5476.119
-
Geller DS, Farhi A, Pinkerton N, Fradley M, Moritz M, Spitzer A, Meinke G, Tsai FT, Sigler PB, Lifton RP 2000 Activating miner-alocorticoid receptor mutationinhypertension exacerbatedbypreg-nancy. Science 289:119-123 (Pubitemid 30463305)
-
(2000)
Science
, vol.289
, Issue.5476
, pp. 119-123
-
-
Geller, D.S.1
Farhi, A.2
Pinkerton, N.3
Fradley, M.4
Moritz, M.5
Spitzer, A.6
Meinke, G.7
Tsai, F.T.F.8
Sigler, P.B.9
Lifton, R.P.10
-
29
-
-
14544275072
-
A critical role of helix 3-helix 5 interaction in steroid hormone receptor function
-
DOI 10.1073/pnas.0409663102
-
Zhang J, Simisky J, Tsai FT, Geller DS 2005 A critical role of helix 3-helix5 interactioninsteroid hormone receptor function. Proc Natl Acad Sci USA 102:2707-2712 (Pubitemid 40299857)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.8
, pp. 2707-2712
-
-
Zhang, J.1
Simisky, J.2
Tsai, F.T.F.3
Geller, D.S.4
-
30
-
-
79955461892
-
Endocrinology
-
Evans DH, Claiborne JB, eds. The physiologyoffishes
-
Takai Y, Loretz CA 2006 Endocrinology. In: Evans DH, Claiborne JB, eds. The physiologyoffishes. Boca Raton, FL:Taylorand Francis Group; 271-319
-
(2006)
Boca Raton, FL:Taylorand Francis Group
, pp. 271-319
-
-
Takai, Y.1
Loretz, C.A.2
-
31
-
-
11144235564
-
Mineralocorticoid receptors and hormones: Fishing for answers
-
DOI 10.1210/en.2004-1390
-
Gilmour KM 2005 Mineralocorticoid receptors and hormones: fishing for answers. Endocrinology 146:44-46 (Pubitemid 40051721)
-
(2005)
Endocrinology
, vol.146
, Issue.1
, pp. 44-46
-
-
Gilmour, K.M.1
-
32
-
-
24744451821
-
A ligand-mediated hydrogen bond network required for the activation of the mineralocorticoid receptor
-
DOI 10.1074/jbc.M504098200
-
Bledsoe RK, Madauss KP, Holt JA, Apolito CJ, Lambert MH, Pearce KH, Stanley TB, Stewart EL, Trump RP, Willson TM, Williams SP 2005 A ligand-mediated hydrogen bond network required for the activation of the mineralocorticoid receptor. J Biol Chem 280:31283-31293 (Pubitemid 41291866)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.35
, pp. 31283-31293
-
-
Bledsoe, R.K.1
Madauss, K.P.2
Holt, J.A.3
Apolito, C.J.4
Lambert, M.H.5
Pearce, K.H.6
Stanley, T.B.7
Stewart, E.L.8
Trump, R.P.9
Willson, T.H.10
Williams, S.P.11
-
33
-
-
0034284122
-
Recent changes to RasMol, recombining the variants
-
DOI 10.1016/S0968-0004(00)01606-6, PII S0968000400016066
-
Bernstein HJ 2000 Recent changes to RasMol, recombining the variants. Trends Biochem Sci 25:453-455 (Pubitemid 30662414)
-
(2000)
Trends in Biochemical Sciences
, vol.25
, Issue.9
, pp. 453-455
-
-
Bernstein, H.J.1
|