Multiple genetic divergences and population expansions of a Mediterranean sandfly, Phlebotomus ariasi, in Europe during the Pleistocene glacial cycles

Heredity

Volumn 106, Issue 5, 2011, Pages 714-726

  Mahamdallie, S S ^a   Pesson, B ^b   Ready, P D ^a  

^a DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

^b UNIVERSITÉ DE STRASBOURG   (France)

Author keywords

genomic DNA; Mediterranean Europe; Phlebotomus ariasi; phylogeography; Pleistocene refugia; Pyrenean barrier

Indexed keywords

CYTOCHROME B; MICROSATELLITE DNA; NUCLEAR PROTEIN; PRIMER DNA;

COLONIZATION; DEMOGRAPHY; DIVERGENCE; ENDEMIC SPECIES; FLY; GENETIC ANALYSIS; GENOMICS; GLACIAL ENVIRONMENT; PARASITIC DISEASE; PHYLOGENETICS; PLEISTOCENE; POPULATION STRUCTURE; REPRODUCTIVE ISOLATION; SELECTION; SYMPATRY;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; DEMOGRAPHY; DNA SEQUENCE; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; HISTORY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHLEBOTOMUS; PHYLOGENY; POPULATION DYNAMICS; POPULATION GENETICS; SOUTHERN EUROPE;

ANIMALS; BASE SEQUENCE; BAYES THEOREM; CYTOCHROMES B; DEMOGRAPHY; DNA PRIMERS; GENETIC VARIATION; GENETICS, POPULATION; HISTORY, ANCIENT; MEDITERRANEAN REGION; MICROSATELLITE REPEATS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PHLEBOTOMUS; PHYLOGENY; POPULATION DYNAMICS; SELECTION, GENETIC; SEQUENCE ANALYSIS, DNA;

EUROPE;

LEISHMANIA INFANTUM; PHLEBOTOMINAE; PHLEBOTOMUS ARIASI; PSYCHODIDAE;

EID: 79955114407     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2010.111     Document Type: Article

References (65)

1. Anisimova M, Bielawski JP, Yang Z (2002). Accuracy and power of Bayes prediction of amino acid sites under positive selection. Mol Biol Evol 19: 950-958. (Pubitemid 34602964)
2. Aransay AM, Malarky G, Ready PD (2001). Isolation (with enrichment) and characterization of trinucleotide microsatellites from Phlebotomus perniciosus, a vector of Leishmania infantum. Mol Ecol Notes 1: 176-178. (Pubitemid 33691703)
3. Aransay AM, Ready PD, Morillas-Marquez F (2003). Population differentiation of Phlebotomus perniciosus in Spain following postglacial dispersal. Heredity 90: 316-325. (Pubitemid 36533011)
4. Beaudouin C, Jouet G, Suc J-P, Berné S, Escarguel G (2007). Vegetation dynamics in southern France during the last 30 ky BP in the light of marine palynology. Quaternary Sci Rev 26: 1037-1054. (Pubitemid 46729741)
5. Brower AVZ (1994). Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proc Natl Acad Sci USA 91: 6491-6495.
6. Calvet M (2004). The quaternary glaciation of the pyrenees. In: Ehlers J, Gibbard PL (eds). Quaternary Glaciations; Extent and Chronology: Europe Pt.1 (developments in Quaternary science). Elsevier Science: London, pp 119-128.
7. Clement M, Posada D, Crandall KA (2000). TCS: a computer program to estimate gene genealogies. Mol Ecol 9: 1657-1659.
8. Delmas M, Gunnell Y, Braucher R, Calvet M, Bourle's D (2008). Exposure age chronology of the last glaciation in the eastern Pyrenees. Quaternary Res 69: 231-241.
9. Dowling DK, Friberg U, Lindell J (2008). Evolutionary implications of non-neutral mitochondrial genetic variation. Trends Ecol Evol 23: 546-554.
10. Esseghir S, Ready PD, Ben-Ismail R (2000). Speciation of Phlebotomus sandflies of the subgenus Larroussius coincided with the late Miocene-Pliocene aridification of the Mediterranean subregion. Biol J Linn Soc 70: 189-219. (Pubitemid 30661144)
11. Excoffier L, Laval G, Schneider S (2005). Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50.
12. Fu Y-X (1997). Statistical tests of neutrality against population growth, hitchhiking and background selection. Genetics 147: 915-925. (Pubitemid 27418596)
13. Gállego Berenguer J, Botet Fregola J, Gállego Culleré M, Portus Vinyeta M (1992). Memoriam Professor Doc D Francisco de Paula Martinez Gomez. Los phlebotomos de la Espana peninsular e Ilos Baleares Identification y corologia. In: Hernandez-Rodrigues S (ed). Comentarios sobre los métodos de captura. Universidad de Córdoba. pp 579-600.
14. Gibbard P, van Kolfschoten T (2004). The Pleistocene and Holocene Epochs. In: Gradstein FM, Ogg JG, Smith AG (eds). A Geologic Time Scale 2004. Cambridge University Press: Cambridge.
15. Gómez A, Lunt DH (2007). Refugia within refugia: patterns of phylogeographic concordance in the Iberian Peninsula. In: Weiss S, Ferrand N (eds). Phylogeography of Southern European Refugia: Evolutionary Perspectives on the Origins and Conservation of European Biodiversity. Kluwer Academic Publishers Group: The Netherlands.
16. Goudet J (2002) FSTAT version 2.9.3.2. A Programme to Estimate and Test Gene Diversities and Fixation Indices. http://www2.unil.ch/popgen/softwares/ fstat.htm.
17. Harpending RC (1994). Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Hum Biol 66: 591-600.
18. Hart MW, Sunday J (2007). Things fall apart: biological species form unconnected parsimony networks. Biol Lett 3: 509-512.
19. Hasegawa M, Kishino H, Yano T (1985). Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22: 160-174. (Pubitemid 16227864)
20. Hewitt GM (1996). Some genetic consequences of ice ages, and their role in divergence and speciation. Biol J Linn Soc 58: 247-276. (Pubitemid 26389802)
21. Hewitt GM (1999). Post-glacial re-colonization of European biota. Biol J Linn Soc 68: 87-112. (Pubitemid 29485515)
22. Hewitt GM (2004). Genetic consequences of climatic oscillations in the Quaternary. Phil Trans R Soc Lond B 359: 183-195. (Pubitemid 38231471)
23. Jalut G, Dedoubat JJ, Fontugne M, Otto T (2009). Holocene circum-Mediterranean vegetation changes: Climate forcing and human impact. Quaternary Intl 200: 4-18.
24. Jenness J (2005). Distance Matrix (dist-mat-jen.avx) extension for ArcView 3.x, v. 2. Jenness Enterprises, Flagstaff, AZ, USA. Available http://www.jennessent.com/arcview/dist-matrix.htm
25. Kass RE, Raftery AE (1995). Bayes factors. J Amer Stat Assoc 90: 773-795.
26. Killick-Kendrick R, Rioux JA, Bailly M, Guy MW, Wilkes TJ, Guy FM et al (1984). Ecology of leishmaniasis in the south of France. 20. Dispersal of Phlebotomus ariasi Tonnoir, 1921 as a factor in the spread of visceral leishmaniasis in the Cévennes. Ann Parasitol Hum Comp 59: 555-572.
27. Loeille N, Leibold MA (2008). Evolution in metacommunities: On the relative importance of species sorting and monopolization in structuring communities. Amer Naturalist 171: 788-799. (Pubitemid 351706506)
28. Lumaret R, Mir C, Michaud H, Raynal V (2002). Phylogeographical variation of chloroplast DNA in holm oak (Quercus ilex L.). Mol Ecol 11: 2327-2336. (Pubitemid 35301903)
29. Maroli M, Rossi L, Baldelli R, Capelli G, Ferroglio E, Genchi C et al. (2008). The northward spread of leishmaniasis in Italy: evidence from retrospective and ongoing studies on the canine reservoir and phlebotomine vectors. Trop Med Int Hlth 13: 256-264. (Pubitemid 351316978)
30. McDonald JH, Kreitman M (1991). Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654. (Pubitemid 21896661)
31. Nei M, Gojobori T (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3: 418-426. (Pubitemid 16010523)
32. Nielsen R, Wakely J (2001). Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158: 885-896. (Pubitemid 32552323)
33. Nylander JAA (2004). MrModeltest v2, Program Distributed by the author, Evolutionary Biology Centre, Uppsala University.
34. Loughlin SM, Somboon P, Walton C (2007). High levels of population structure caused by habitat islands in the malarial vector Anopheles scanloni. Heredity 99: 31-40. (Pubitemid 47013402)
35. Parvizi P, Taherkhani H, Ready PD (2010). Phlebotomus caucasicus and Phlebotomus mongolensis (Diptera: Psychodidae): indistinguishable by the mitochondrial cytochrome b gene in Iran. Bull Entom Res 100: 415-420.
36. Perrotey S, Mahamdallie S, Pesson B, Richardson KJ, Gallego M, Ready PD (2005). Postglacial origins and dispersal of Phlebotomus perniciosus in France. Parasite 12: 283-291. (Pubitemid 41811386)
37. Pesson B, Ready JS, Benabdennbi I, Mart?́n-Sánchez J, Esseghir S, Cadi-Soussi M et al. (2004). Sandflies of the Phlebotomus perniciosus complex: mitochondrial introgression and a new sibling species of P. longicuspis in the Moroccan Rif. Med Vet Entom 18: 25-73.
38. Pratlong F, Rioux JA, Marty P, Faraut-Gambarelli FF, Dereure J, Lanotte G et al. (2004). Isoenzymatic analysis of 712 strains of Leishmania infantum in the south of France and relationship of enzymatic polymorphism to clinical and epidemiological features. J Clin Microbiol 42: 4077-4082. (Pubitemid 39296127)
39. Rambaut A, Drummond AJ (2007). Tracer v1.4. Available from http://beast.bio.ac.uk/Tracer.
40. Ramirez-Soriano A, Ramos-Onsins SE, Rozas J, Calafell F, Navarro A (2008). Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination. Genetics 179: 555-567.
41. Ramos-Onsins SE, Rozas J (2002). Statistical properties of new neutrality tests against population growth. Mol Biol Evol 19: 2092-2100. (Pubitemid 35440445)
42. Rand DM, Kann LM (1996). Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans. Mol Biol Evol 13: 735-748. (Pubitemid 26240078)
43. Raymond M, Rousset F (1995). GENEPOP (Version1.2): population genetics software for exact tests and ecumenicism. J Heredity 86: 248-249.
44. Ready PD (2010). Leishmaniasis emergence in Europe. Euro Surveill 15
45. Ready PD, Croset H (1980). Diapause and laboratory breeding of Phlebotomus perniciosus Newstead and Phlebotomus ariasi Tonnoir (Diptera: Psychodidae) from southern France. Bull Entom Res 70: 511-523.
46. Ribera I, Vogler AP (2004). Speciation of Iberian diving beetles in Pleistocene refugia (Coleoptera, Dytiscidae). Mol Ecol 13: 179-193. (Pubitemid 38106483)
47. Rioux JA, Golvan YJ (1969). Epidémiologie des leishmanioses dans le sud de la France. Monographie de l?INSERM (Paris) 37: 1-223.
48. Rioux JA, Rispail P, Lanotte G, Lepart J (1984). Relations Phlébotomes-Bioclimats en écologie des leishmanioses. Corollaires épidémiologiques. L?exemple du Maroc Bull Soc Bot Fr 131: 549-557.
49. Rogers AR, Harpending H (1992). Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9: 552-569.
50. Ronquist F, Huelsenbeck JP (2003). MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574. (Pubitemid 37038874)
51. Rousset F (1997). Genetic differentiation and estimation of gene flow from F- statistics under isolation by distance. Genetics 145: 1219-1228. (Pubitemid 27149123)
52. Rozas J, Sánchez-Delbarrio JC, Messeguer X, Rozas R (2003). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497. (Pubitemid 38016658)
53. Sasai N, Kato Y, Kimura G, Takeuchi T, Yamaguchi M (2007). The Drosophila jumonji gene encodes a JmjC-containing nuclear protein that is required for metamorphosis. FEBS Journal 274: 6139-6151. (Pubitemid 350139203)
54. Schmidt D, Pool J (2002). The effect of population history on the distribution of the Tajima?s D statistic. http://www.cam.cornell.edu/Bdeena/ TajimasD.pdf.
55. Schmitt T (2007). Molecular biogeography of Europe: Pleistocene cycles and postglacial trends. Frontiers Zool 4: 11.
56. Sommer SS, Groszbach AR, Bottema CD (1992). PCR amplification of specific alleles (PASA) is a general method for rapidly detecting known single-base changes. Biotechniques 12: 82-87.
57. Spooner LJ, Ritchie MG (2006). An unusual phylogeography in the bushcricket Ephippiger ephippiger from Southern France. Heredity 97: 398-408. (Pubitemid 44851247)
58. Steininger FF, Rogl F (1984). Palaeogeography and palinspastic reconstruction of the Neogene of the Mediterranean and Paratethys. In: Dixon JE, Robertson AFH (eds). The Geological Evolution of the Eastern Mediterranean. Blackwell Scientific Publications: Oxford.
59. Sudia WD, Chamberland RW (1962). Battery operated light trap, an improved model. Mosquito News 22: 126-129.
60. Swofford DL (2002). PAUP Phylogenetic Analysis Using Parsimony, version 40b10. Smithsonian Institution Press: Washington DC.
61. Taberlet P, Fumagalli L, Wust-Saucy A-G, Cosson J-F (1998). Comparative phylogeography and postglacial colonization routes in Europe. Mol Ecol 7: 453-464. (Pubitemid 28226692)
62. Testa JM, Montoya-Lerma J, Cadena H, Oviedo M, Ready PD (2002). Molecular identification of vectors of Leishmania in Colombia: mitochondrial introgression in the Lutzomyia townsendi series. Acta Trop 84: 205-218. (Pubitemid 35346564)
63. Wayne ML, Simonsen KL (1998). Statistical tests of neutrality in the age of weak selection. TREE 13: 236-240. (Pubitemid 28267765)
64. Wright S (1978). Evolution and the Genetics of Populations, Vol. IV. Variability within and among natural populations. University of Chicago Press: Chicago.
65. Yang Z (2007). PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591. (Pubitemid 47236688)