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Volumn 11, Issue 9, 2011, Pages 1789-1797

Towards the profiling of the Arabidopsis thaliana plasma membrane transportome by targeted proteomics

Author keywords

Arabidopsis; Multiple reaction monitoring; Plant proteomics; Plasma membrane; Transporter

Indexed keywords

ADENOSINE TRIPHOSPHATASE; CARRIER PROTEIN; MEMBRANE PROTEIN; NITRATE TRANSPORTER; PROTON PUMP; TRANSCRIPTOME;

EID: 79955040215     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201000660     Document Type: Article
Times cited : (37)

References (42)
  • 1
    • 0141790803 scopus 로고    scopus 로고
    • Transcriptome analysis of root transporters reveals participation of multiple gene families in the response to cation stress
    • Maathuis, F. J. M., Fitalof, V., Herzyk, P., Krijger, G. C. et al., Transcriptome analysis of root transporters reveals participation of multiple gene families in the response to cation stress. Plant J. 2003, 35, 675-692.
    • (2003) Plant J. , vol.35 , pp. 675-692
    • Maathuis, F.J.M.1    Fitalof, V.2    Herzyk, P.3    Krijger, G.C.4
  • 2
    • 12444323669 scopus 로고    scopus 로고
    • An expression analysis of a gene family encoding plasma membrane aquaporins in response to abiotic stress in Arabidopsis thaliana
    • Jang, J. Y., Kim, D. G., Kim, Y. O., Kang, H., An expression analysis of a gene family encoding plasma membrane aquaporins in response to abiotic stress in Arabidopsis thaliana. Plant Mol. Biol. 2004, 54, 713-725.
    • (2004) Plant Mol. Biol. , vol.54 , pp. 713-725
    • Jang, J.Y.1    Kim, D.G.2    Kim, Y.O.3    Kang, H.4
  • 3
    • 12444289103 scopus 로고    scopus 로고
    • The potassium-dependent transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling
    • Armengaud, P., Breitling, R., Amtmann, A., The potassium-dependent transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling. Plant Physiol. 2004, 136, 2556-2576.
    • (2004) Plant Physiol. , vol.136 , pp. 2556-2576
    • Armengaud, P.1    Breitling, R.2    Amtmann, A.3
  • 4
    • 33750367871 scopus 로고    scopus 로고
    • Comprehensive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes
    • Jiang, Y., Deyholos, M. K., Comprehensive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes. Biomed. Chromatogr. Plant Biol. 2006, 6, 25.
    • (2006) Biomed. Chromatogr. Plant Biol. , vol.6 , pp. 25
    • Jiang, Y.1    Deyholos, M.K.2
  • 5
    • 33645021255 scopus 로고    scopus 로고
    • The role of monovalent cation transporters in plant responses to salinity
    • Maathuis, F. J., The role of monovalent cation transporters in plant responses to salinity. J. Exp. Bot. 2006, 57, 1137-1147.
    • (2006) J. Exp. Bot. , vol.57 , pp. 1137-1147
    • Maathuis, F.J.1
  • 6
    • 77950418344 scopus 로고    scopus 로고
    • Research on plant abiotic stress responses in the post-genome era: past, present and future
    • Hirayama, T., Shinozaki, K., Research on plant abiotic stress responses in the post-genome era: past, present and future. Plant J. 2010, 61, 1041-1052.
    • (2010) Plant J. , vol.61 , pp. 1041-1052
    • Hirayama, T.1    Shinozaki, K.2
  • 7
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative
    • The Arabidopsis Genome Initiative, Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408, 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 8
    • 0035781086 scopus 로고    scopus 로고
    • Plant plasma membrane H+-ATPases: powerhouses for nutrient uptake
    • Palmgren, M. G., Plant plasma membrane H+-ATPases: powerhouses for nutrient uptake. Ann. Rev. Plant Physiol. Plant Mol. Biol. 2001, 52, 817-845.
    • (2001) Ann. Rev. Plant Physiol. Plant Mol. Biol. , vol.52 , pp. 817-845
    • Palmgren, M.G.1
  • 10
    • 0036010127 scopus 로고    scopus 로고
    • Nitrate transport in plants: which gene and which control?
    • Orsel, M., Filleur, S., Fraisier, V., Daniel-Vedele, F., Nitrate transport in plants: which gene and which control? J. Exp. Bot. 2002, 53, 825-833.
    • (2002) J. Exp. Bot. , vol.53 , pp. 825-833
    • Orsel, M.1    Filleur, S.2    Fraisier, V.3    Daniel-Vedele, F.4
  • 11
    • 11144273935 scopus 로고    scopus 로고
    • Arabidopsis plasma membrane proteomics identifies components of transport, signal transduction and membrane trafficking
    • Alexandersson, E., Saalbach, G., Larsson, C., Kjellbom, P., Arabidopsis plasma membrane proteomics identifies components of transport, signal transduction and membrane trafficking. Plant Cell Physiol. 2004, 45, 1543-1556.
    • (2004) Plant Cell Physiol. , vol.45 , pp. 1543-1556
    • Alexandersson, E.1    Saalbach, G.2    Larsson, C.3    Kjellbom, P.4
  • 12
    • 4143128922 scopus 로고    scopus 로고
    • Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome
    • Marmagne, A., Rouet, M. A., Ferro, M., Rolland, N. et al., Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Mol. Cell. Proteomics 2004, 3, 675-691.
    • (2004) Mol. Cell. Proteomics , vol.3 , pp. 675-691
    • Marmagne, A.1    Rouet, M.A.2    Ferro, M.3    Rolland, N.4
  • 13
    • 36749034740 scopus 로고    scopus 로고
    • A high content in lipid-modified peripheral proteins and integral receptor kinases features in the Arabidopsis plasma membrane proteome
    • Marmagne, A., Ferro, M., Meinnel, T., Bruley, C. et al., A high content in lipid-modified peripheral proteins and integral receptor kinases features in the Arabidopsis plasma membrane proteome. Mol. Cell. Proteomics 2007, 6, 1980-1996.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1980-1996
    • Marmagne, A.1    Ferro, M.2    Meinnel, T.3    Bruley, C.4
  • 14
    • 33645721632 scopus 로고    scopus 로고
    • Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins
    • Anderson, L., Hunter, C. L., Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol. Cell. Proteomics 2006, 5, 573-588.
    • (2006) Mol. Cell. Proteomics , vol.5 , pp. 573-588
    • Anderson, L.1    Hunter, C.L.2
  • 15
    • 34548180275 scopus 로고    scopus 로고
    • A multiple reaction monitoring method for absolute quantification of the human liver alcohol dehydrogenase ADH1C1 isoenzyme
    • Janecki, D. J., Bemis, K. G., Tegeler, T. J., Sanghani, P. C. et al., A multiple reaction monitoring method for absolute quantification of the human liver alcohol dehydrogenase ADH1C1 isoenzyme. Anal. Biochem. 2007, 369, 18-26.
    • (2007) Anal. Biochem. , vol.369 , pp. 18-26
    • Janecki, D.J.1    Bemis, K.G.2    Tegeler, T.J.3    Sanghani, P.C.4
  • 16
    • 35348863892 scopus 로고    scopus 로고
    • High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites
    • Stahl-Zeng, J., Lange, V., Ossola, R., Eckhardr, K. et al., High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites. Mol. Cell. Proteomics 2007, 6, 1809-1817.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1809-1817
    • Stahl-Zeng, J.1    Lange, V.2    Ossola, R.3    Eckhardr, K.4
  • 17
    • 54049090766 scopus 로고    scopus 로고
    • Selected reaction monitoring for quantitative proteomics: a tutorial
    • Lange, V., Picotti, P., Domon, B., Aebersold, R., Selected reaction monitoring for quantitative proteomics: a tutorial. Mol. Syst. Biol. 2008, 4, 222.
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 222
    • Lange, V.1    Picotti, P.2    Domon, B.3    Aebersold, R.4
  • 18
    • 71049137289 scopus 로고    scopus 로고
    • Multiple reaction monitoring-based multiplexed, absolute quantitation of 45 proteins in human plasma
    • Kuzyk, M. A., Smith, D., Yang, J., Cross, T. J. et al., Multiple reaction monitoring-based multiplexed, absolute quantitation of 45 proteins in human plasma. Mol. Cell. Proteomics 2009, 8, 1860-1877.
    • (2009) Mol. Cell. Proteomics , vol.8 , pp. 1860-1877
    • Kuzyk, M.A.1    Smith, D.2    Yang, J.3    Cross, T.J.4
  • 19
    • 74049131716 scopus 로고    scopus 로고
    • High-throughput generation of selected reaction monitoring assays for proteins and proteomes
    • Picotti, P., Rinner, O., Stallmach, R., Dautel, F. et al., High-throughput generation of selected reaction monitoring assays for proteins and proteomes. Nat. Methods 2010, 7, 43-46.
    • (2010) Nat. Methods , vol.7 , pp. 43-46
    • Picotti, P.1    Rinner, O.2    Stallmach, R.3    Dautel, F.4
  • 20
    • 43049114146 scopus 로고    scopus 로고
    • Quantitative atlas of membrane transporter proteins: development and application of a highly sensitive simultaneous LC/MS/MS method combined with novel in-silico peptide selection criteria
    • Kamiie, J., Ohtsuki, S., Iwase, R., Ohmine, K. et al., Quantitative atlas of membrane transporter proteins: development and application of a highly sensitive simultaneous LC/MS/MS method combined with novel in-silico peptide selection criteria. Pharm. Res. 2008, 25, 1469-1482.
    • (2008) Pharm. Res. , vol.25 , pp. 1469-1482
    • Kamiie, J.1    Ohtsuki, S.2    Iwase, R.3    Ohmine, K.4
  • 21
    • 33644659755 scopus 로고    scopus 로고
    • Early effects of salinity on water transport in Arabidopsis: molecular and cellular features of aquaporin expression
    • Boursiac, Y., Chen, S., Luu, D. T., Sorieul, M. et al., Early effects of salinity on water transport in Arabidopsis: molecular and cellular features of aquaporin expression. Plant Physiol. 2005, 139, 790-805.
    • (2005) Plant Physiol. , vol.139 , pp. 790-805
    • Boursiac, Y.1    Chen, S.2    Luu, D.T.3    Sorieul, M.4
  • 22
    • 34848869768 scopus 로고    scopus 로고
    • Identification of a 150bp cis-acting element of the AtNRT2.1 promoter involved in the regulation of gene expression by the N and C status of the plant
    • Girin, T., Lejay, L., Wirth, J., Widiez, T. et al., Identification of a 150bp cis-acting element of the AtNRT2.1 promoter involved in the regulation of gene expression by the N and C status of the plant. Plant Cell Environ. 2007, 30, 1366-1380.
    • (2007) Plant Cell Environ. , vol.30 , pp. 1366-1380
    • Girin, T.1    Lejay, L.2    Wirth, J.3    Widiez, T.4
  • 23
    • 0037667409 scopus 로고    scopus 로고
    • A proteomic study reveals novel insights into the diversity of aquaporin forms expressed in the plasma membrane of plant roots
    • Santoni, V., Vinh, J., Pflieger, D., Sommerer, N., Maurel, C., A proteomic study reveals novel insights into the diversity of aquaporin forms expressed in the plasma membrane of plant roots. Biochem. J. 2003, 373, 289-296.
    • (2003) Biochem. J. , vol.373 , pp. 289-296
    • Santoni, V.1    Vinh, J.2    Pflieger, D.3    Sommerer, N.4    Maurel, C.5
  • 24
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford, M. M., A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 1976, 72, 248-254.
    • (1976) Anal. Biochem. , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 25
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli, U. K., Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227, 680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 26
    • 67349266694 scopus 로고    scopus 로고
    • Universal sample preparation method for proteome analysis
    • Wisniewski, J. R., Zougman, A., Nagaraj, N., Mann, M., Universal sample preparation method for proteome analysis. Nat. Protoc. 2009, 6, 359-363.
    • (2009) Nat. Protoc. , vol.6 , pp. 359-363
    • Wisniewski, J.R.1    Zougman, A.2    Nagaraj, N.3    Mann, M.4
  • 27
    • 59849093889 scopus 로고    scopus 로고
    • Prediction of high-responding peptides for targeted protein assays by mass spectrometry
    • Fusaro, V. A., Mani, D. R., Mesirov, J. P., Carr, S. A., Prediction of high-responding peptides for targeted protein assays by mass spectrometry. Nat. Biotechnol. 2009, 27, 190-198.
    • (2009) Nat. Biotechnol. , vol.27 , pp. 190-198
    • Fusaro, V.A.1    Mani, D.R.2    Mesirov, J.P.3    Carr, S.A.4
  • 28
    • 5744223586 scopus 로고    scopus 로고
    • An improved model for prediction of retention times of tryptic peptides in ion-pair reverse-phase HPLC: its application to protein peptide mapping by off-line HPLC-MALDI MS
    • Krokhin, O. V., Craig, R., Spicer, V., Ens, W. et al., An improved model for prediction of retention times of tryptic peptides in ion-pair reverse-phase HPLC: its application to protein peptide mapping by off-line HPLC-MALDI MS. Mol. Cell. Proteomics 2004, 3, 908-919.
    • (2004) Mol. Cell. Proteomics , vol.3 , pp. 908-919
    • Krokhin, O.V.1    Craig, R.2    Spicer, V.3    Ens, W.4
  • 29
    • 0033565837 scopus 로고    scopus 로고
    • Experimental comparison of the different approaches to estimate LOD and LOQ of an HPLC method
    • Vial, J., Jardy, A., Experimental comparison of the different approaches to estimate LOD and LOQ of an HPLC method. Anal. Chem. 1999, 71, 2672-2677.
    • (1999) Anal. Chem. , vol.71 , pp. 2672-2677
    • Vial, J.1    Jardy, A.2
  • 30
    • 0038460026 scopus 로고    scopus 로고
    • Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice
    • Baxter, I., Tchieu, J., Sussman, M. R., Boutry, M. et al., Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice. Plant Physiol. 2003, 132, 618-628.
    • (2003) Plant Physiol. , vol.132 , pp. 618-628
    • Baxter, I.1    Tchieu, J.2    Sussman, M.R.3    Boutry, M.4
  • 32
    • 44949265295 scopus 로고    scopus 로고
    • Plant aquaporins: membrane channels with multiple integrated functions
    • Maurel, C., Verdoucq, L., Luu, D. T., Santoni, V., Plant aquaporins: membrane channels with multiple integrated functions. Annu. Rev. Plant Biol. 2008, 59, 595-624.
    • (2008) Annu. Rev. Plant Biol. , vol.59 , pp. 595-624
    • Maurel, C.1    Verdoucq, L.2    Luu, D.T.3    Santoni, V.4
  • 33
  • 34
    • 34248193815 scopus 로고    scopus 로고
    • Nitrate transporters and peptide transporters
    • Tsay, Y. F., Chiu, C. C., Tsai, C. B., Ho, C. H., Hsu, P. K., Nitrate transporters and peptide transporters. FEBS Lett. 2007, 581, 2290-2300.
    • (2007) FEBS Lett. , vol.581 , pp. 2290-2300
    • Tsay, Y.F.1    Chiu, C.C.2    Tsai, C.B.3    Ho, C.H.4    Hsu, P.K.5
  • 35
    • 33646897351 scopus 로고    scopus 로고
    • High-affinity nitrate transport in roots of Arabidopsis depends on expression of the NAR2-like gene AtNRT3.1
    • Okamoto, M., Kumar, A., Li, W., Wang, Y. et al., High-affinity nitrate transport in roots of Arabidopsis depends on expression of the NAR2-like gene AtNRT3.1. Plant Physiol. 2006, 140, 1036-1046.
    • (2006) Plant Physiol. , vol.140 , pp. 1036-1046
    • Okamoto, M.1    Kumar, A.2    Li, W.3    Wang, Y.4
  • 36
    • 2942638465 scopus 로고    scopus 로고
    • Regulatory levels for the transport of ammonium in plant roots
    • Loqué, D., von Wirén, N., Regulatory levels for the transport of ammonium in plant roots. J. Exp. Bot. 2004, 55, 1293-1305.
    • (2004) J. Exp. Bot. , vol.55 , pp. 1293-1305
    • Loqué, D.1    von Wirén, N.2
  • 37
    • 46749099449 scopus 로고    scopus 로고
    • Multiple phosphorylations in the C-terminal tail of plant plasma membrane aquaporins
    • Prak, S., Hem, S., Boudet, J., Viennois, G. et al., Multiple phosphorylations in the C-terminal tail of plant plasma membrane aquaporins. Mol. Cell. Proteomics 2008, 7, 1019-1030.
    • (2008) Mol. Cell. Proteomics , vol.7 , pp. 1019-1030
    • Prak, S.1    Hem, S.2    Boudet, J.3    Viennois, G.4
  • 38
    • 33751100106 scopus 로고    scopus 로고
    • Methylation of aquaporins in plant plasma membrane
    • Santoni, V., Verdoucq, L., Sommerer, N., Vinh, J. et al., Methylation of aquaporins in plant plasma membrane. Biochem. J. 2006, 400, 189-197.
    • (2006) Biochem. J. , vol.400 , pp. 189-197
    • Santoni, V.1    Verdoucq, L.2    Sommerer, N.3    Vinh, J.4
  • 40
    • 17444429670 scopus 로고    scopus 로고
    • Analysis of shotgun proteomics and RNA profiling data from Arabidopsis thaliana chloroplasts
    • Baginsky, S., Kleffmann, T., von Zychlinski, A., Gruissem, W., Analysis of shotgun proteomics and RNA profiling data from Arabidopsis thaliana chloroplasts. J. Proteome Res. 2005, 4, 637-640.
    • (2005) J. Proteome Res. , vol.4 , pp. 637-640
    • Baginsky, S.1    Kleffmann, T.2    von Zychlinski, A.3    Gruissem, W.4
  • 41
    • 51249117296 scopus 로고    scopus 로고
    • If the antibody fails: a mass western approach
    • Lehmann, U., Wienkoop, S., Tschoep, H., Weckwerth, W., If the antibody fails: a mass western approach. Plant J. 2008, 55, 1039-1046.
    • (2008) Plant J. , vol.55 , pp. 1039-1046
    • Lehmann, U.1    Wienkoop, S.2    Tschoep, H.3    Weckwerth, W.4
  • 42
    • 51749100872 scopus 로고    scopus 로고
    • Absolute quantification of Medicago truncatula sucrose synthase isoforms and N-metabolism enzymes in symbiotic root nodules and the detection of novel nodule phosphoproteins by mass spectrometry
    • Wienkoop, S., Larrainzar, E., Glinski, M., González, E. M. et al., Absolute quantification of Medicago truncatula sucrose synthase isoforms and N-metabolism enzymes in symbiotic root nodules and the detection of novel nodule phosphoproteins by mass spectrometry. J. Exp. Bot. 2008, 59, 3307-3315.
    • (2008) J. Exp. Bot. , vol.59 , pp. 3307-3315
    • Wienkoop, S.1    Larrainzar, E.2    Glinski, M.3    González, E.M.4


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