Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice

Plant Physiology

Volumn 132, Issue 2, 2003, Pages 618-628

  Baxter, Ivan ^a   Tchieu, Jason ^b   Sussman, Michael R ^c   Boutry, Marc ^d   Palmgren, Michael G ^e   Gribskov, Michael ^b   Harper, Jeffrey F ^a   Axelsen, Kristian B ^e,f  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF WISCONSIN MADISON   (United States)

^d UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

^e UNIVERSITY OF COPENHAGEN   (Denmark)

^f SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; ENZYMES; GENES;

ION PUMPS;

PLANTS (BOTANY);

ARABIDOPSIS; DICOTYLEDONEAE; EMBRYOPHYTA; LILIOPSIDA; MAGNOLIOPHYTA; ORYZA SATIVA;

EID: 0038460026     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.103.021923     Document Type: Article

References (50)

1. Altschul S, Gish W, Miller W, Myers E, Lipman D (1990) Basic local alignment search tool. J Mol Biol 215: 403-410
2. Arango M, Gévaudant F, Oufattole M, Boutry M (2003) The plasma membrane proton pump ATPase: the significance of gene subfamilies. Planta 216: 355-365
3. Axelsen KB, Palmgren MG (1998) Evolution of substrate specificities in the P-type ATPase superfamily. J Mol Evol 46: 84-101
4. Axelsen KB, Palmgren MG (2001) Inventory of the superfamily of P-type ion pumps in Arabidopsis. Plant Physiol 126: 696-706
5. Banuelos MA, Garciadeblas B, Cubero B, Rodriguez-Navarro A (2002) Inventory and functional characterization of the HAK potassium transporters of rice. Plant Physiol 130: 784-795
6. Baumberger N, Doesseger B, Guyot R, Diet A, Parsons RL, Clark MA, Simmons MP, Bedinger P, Goff SA, Ringli C et al. (2003) Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis and rice: A conserved family of cell wall proteins form a vegetative and a reproductive clade. Plant Physiol 131: 1313-1326
7. Bonza MC, Morandini P, Luoni L, Geisler M, Palmgren MG, De Michelis MI (2000) At-ACA8 encodes a plasma membrane-localized calcium-ATPase of Arabidopsis with a calmodulin-binding domain at the N terminus. Plant Physiol 123: 1495-1506
8. +-ATPase identified through homology modelling. FEBS Lett 494: 6-10
9. Bull LN, van Eijk MJ, Pawlikowska L, DeYoung JA, Juijn JA, Liao M, Klomp LW, Lomri N, Berger R, Scharschmidt BF et al. (1998) A gene encoding a P-type ATPase mutated in two forms of hereditary cholestasis. Nat Genet 18: 219-224
10. Carafoli E, Brini M (2000) Calcium pumps: structural basis for and mechanism of calcium transmembrane transport. Curr Opin Chem Biol 4: 152-161
11. Catty P, de Kerchove d'Exaerde A, Goffeau A (1997) The complete inventory of the yeast Saccharomyces cerevisiae P-type transport ATPases. FEBS Lett 409: 325-332
12. 2+ in the gibberellin-dependent signaling pathway in aleurone cells. Plant J 11: 363-371
13. 2+ homeostasis. J Cell Biol 157: 1017-1028
14. Curran AC, Hwang I, Corbin J, Martinez S, Rayle D, Sze H, Harper JF (2000) Autoinhibition of a calmodulin-dependent calcium pump involves a structure in the stalk that connects the transmembrane domain to the ATPase catalytic domain. J Biol Chem 275: 30301-30308
15. +-ATPase isoforms to the plasma membrane. Plant Physiol 112: 833-844
16. 2+-ATPases in tomato. Plant Cell 8: 1159-1169
17. Florea L, Hartzell G, Zhang Z, Rubin GM, Miller W (1998) A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res 8: 967-974
18. Gall WE, Geething NC, Hua Z, Ingram MF, Liu K, Chen SI, Graham TR (2002) Drs2p-dependent formation of exocytic clathrin-coated vesicles in vivo. Curr Biol 12: 1623-1627
19. 2+-ATPases. Biochim Biophys Acta 1465: 52-78
20. Geisler M, Frangne N, Gomes E, Martinoia E, Palmgren MG (2000b) The ACA4 gene of Arabidopsis encodes a vacuolar membrane calcium pump that improves salt tolerance in yeast. Plant Physiol 124: 1814-1827
21. Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296: 92-100
22. Gomes E, Jakobsen MK, Axelsen KB, Geisler M, Palmgren MG (2000) Chilling tolerance in Arabidopsis involves ALA1, a member of a new family of putative aminophospholipid translocases. Plant Cell 12: 2441-2454
23. 2+-ATPase (ACA2) from Arabidopsis with an N-terminal autoinhibitory domain. J Biol Chem 273: 1099-1106
24. +-ATPase gene family in Arabidopsis: genomic sequence of AHA10 which is expressed primarily in developing seeds. Mol Gen Genet 244: 572-587
25. Hirayama T, Kieber JJ, Hirayama N, Kogan M, Guzman P, Nourizadeh S, Alonso JM, Dailey WP, Dancis A, Ecker JR (1999) RESPONSIVE-TO-ANTAGONIST1, a Menkes/Wilson disease-related copper transport, is required for ethylene signaling in Arabidopsis. Cell 97: 383-393
26. 2+-ATPase in the endoplasmic reticulum. Plant Physiol 119: 1165-1176
27. +-ATPase whose expression is restricted to anther tissue. Plant J 5: 311-317
28. Jasinski M, Ducos E, Martinoia E, Boutry M (2003) The ATP-binding cassette transporters: structure, function, and gene family comparison between rice and Arabidopsis. Plant Physiol 131: 1169-1177
29. +-ATPase. Science 297: 1692-1696
30. 2+-ATPase from plant vacuolar membranes with a putative regulatory domain at its N-terminus. FEBS Lett 400: 324-328
31. +-ATPase. Proc Natl Acad Sci USA 99: 15977-15982
32. +-ATPases: powerhouses for nutrient uptake. Annu Rev Plant Physiol Plant Mol Biol 52: 817-845
33. Palmgren MG, Axelsen KB (1998) Evolution of P-type ATPases. Biochim Biophys Acta 1365: 37-45
34. Pedersen P, Carafoli E (1987) Ion motive ATPases. I. Ubiquity, properties, and significance to cell function. Trends Biochem Sci 4: 146-150
35. Pertea M, Salzberg SL (2002) Computational gene finding in plants. Plant Mol Biol 48: 39-48
36. 2+-ATPases are expressed in Arabidopsis thaliana: evidence that type IIA sub-groups exist. Gene 236: 137-147
37. +-ATPase of Neurospora crassa. Eur J Biochem 269: 5246-5258
38. Sessions A, Burke E, Presting G, Aux G, McElver J, Patton D, Dietrich B, Ho P, Bacwaden J, Ko C et al. (2002) A high-throughput Arabidopsis reverse genetics system. Plant Cell 14: 2985-2994
39. 2+ pumps: insights from expression in yeast. Annu Rev Plant Physiol Plant Mol Biol 51: 433-462
40. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
41. Toyoshima C, Nakasako M, Nomura H, Ogawa H (2000) Crystal structure of the calcium pump of sarcoplasmic reticulum at 2.6 Å resolution. Nature 405: 647-655
42. Toyoshima C, Nomura H (2002) Structural changes in the calcium pump accompanying the dissociation of calcium. Nature 418: 605-611
43. Vashist S, Frank CG, Jakob CA, Ng DT (2002) Two distinctly localized P-type ATPases collaborate to maintain organelle homeostasis required for glycoprotein processing and quality control. Mol Biol Cell 13: 3955-3966
44. +-ATPase in the root endodermis. Plant J 27: 191-201
45. Williams LE, Pittman JK, Hall JL (2000) Emerging mechanisms for heavy metal transport in plants. Biochim Biophys Acta 1465: 104-126
46. Wong GK-S, Wang J, Tao L, Tan J, Zhang J, Passey DA, Yu J (2002) Compositional gradients in Gramineae genes. Genome Res 12: 851-856
47. 2+ stress. Plant Physiol 130: 128-137
48. Young JC, Krysan PJ, Sussman MR (2001) Efficient screening of Arabidopsis T-DNA insertion lines using degenerate primers. Plant Physiol 125: 513-518
49. Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296: 79-92
50. +-ATPase isoform impairs sucrose translocation, stomatal opening, plant growth, and male fertility. Plant Cell 12: 535-546