Analysis of shotgun proteomics and RNA profiling data from Arabidopsis thaliana chloroplasts

Journal of Proteome Research

Volumn 4, Issue 2, 2005, Pages 637-640

  Baginsky, Sacha ^a   Kleffmann, Torsten ^a   Von Zychlinski, Anne ^a   Gruissem, Wilhelm ^a  

^a ETH ZURICH   (Switzerland)

Author keywords

Chloroplast; Mass spectrometry; Shotgun proteomics; Transcriptional profiling

Indexed keywords

CELL PROTEIN; PLANT RNA;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; CHLOROPLAST; CONTROLLED STUDY; CORRELATION ANALYSIS; GENE EXPRESSION PROFILING; GENETIC IDENTIFICATION; GENETIC TRANSCRIPTION; GENOME; HIGH THROUGHPUT SCREENING; MASS SPECTROMETRY; MOLECULAR WEIGHT; NONHUMAN; PHYSICAL CHEMISTRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; VALIDATION PROCESS;

ARABIDOPSIS; CHLOROPLASTS; GENE EXPRESSION PROFILING; PROTEOMICS; RNA, PLANT; TRANSCRIPTION, GENETIC;

ARABIDOPSIS; ARABIDOPSIS THALIANA; GOES;

EID: 17444429670     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr049764u     Document Type: Article

References (14)

1. Aebersold, R.; Mann, M. Nature 2003, 422, 198-207.
2. Panda, S.; Sato, T. K.; Hampton, G. M.; Hogenesch, J. B. Trends Cell Biol. 2003, 13, 151-156.
3. Bader, G. D.; Heilbut, A.; Andrews, B.; Tyers, M.; Hughes, T.; Boone, C. Trends Cell Biol. 2003, 13, 344-356.
4. Ge, H.; Walhout, A. J.; Vidal, M. Trends Genet. 2003, 19, 551-560.
5. Greenbaum, D.; Colangelo, C.; Williams, K.; Gerstein, M. Genome Biol. 2003, 4, 117.
6. Gygi, S. P.; Rochon, Y.; Franza, B. R.; Aebersold, R. Mol Cell Biol. 1999, 19, 1720-1730.
7. Tian, Q.; Stepaniants, S. B.; Mao, M.; Weng, L.; Feetham, M. C.; Doyle, M. J.; Yi, E. C.; Dai, H.; Thorsson, V.; Eng, J.; Goodlett, D.; Berger, J. P.; Gunter, B.; Linseley, P. S.; Stoughton, R. B.; Aebersold, R.; Collins, S. J.; Hanlon, W. A.; Hood, L. E. Mol. Cell. Proteomics 2004, 3, 960-969.
8. Kleffmann, T.; Russenberger, D.; von Zychlinski, A.; Christopher, W.; Sjoelander, K.; Gruissem, W.; Baginsky, S. Curr. Biol. 2004, 14, 362-375.
9. Emanuelsson, O.; Nielsen, H.; Brunak, S.; von Heijne, G. J. Mol. Biol. 2000, 300, 1005-1016.
10. Corbin, R. W.; Paliy, O.; Yang, F.; Shabanowitz, J.; Platt, M.; Lyons, C. E., Jr.; Root, K.; McAuliffe, J.; Jordan, M. I.; Kustu, S.; Soupene, E.; Hunt, D. F. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 9232-9237.
11. Nesvizhskii, A. I.; Keller, A.; Kolker, E.; Aebersold, R. Anal. Chem. 2003, 75, 4646-4658.
12. Baginsky, S.; Shteiman-Kotler, A.; Liveanu, V.; Yehudai-Resheff, S.; Bellaoui, M.; Settlage, R. E.; Shabanowitz, J.; Hunt, D. F.; Schuster, G.; Gruissem, W. RNA 2001, 7, 1464-1475.
13. Silva-Filho, M. C. Curr. Opin. Plant Biol. 2003, 6, 589-595.
14. Heazlewood, J. L.; Tonti-Filippini, J. S.; Gout, A. M.; Day, D. A.; Whelan, J.; Millar, A. H. Plant Cell 2004, 16, 241-256.