C- and N-catabolic utilization of tricarboxylic acid cycle-related amino acids by Scheffersomyces stipitis and other yeasts

Yeast

Volumn 28, Issue 5, 2011, Pages 375-390

  Freese, Stefan ^a   Vogts, Tanja ^a   Speer, Falk ^a   Schäfer, Bernd ^a   Passoth, Volkmar ^b   Klinner, Ulrich ^a  

^a RWTH AACHEN UNIVERSITY   (Germany)

^b SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

Amino acids; Carbon sources; GDH1; GDH2; GDH3; Nitrogen sources; Scheffersomyces stipitis

Indexed keywords

ALCOHOL; AMINO ACID; AMMONIA; ASPARTIC ACID; CARBON; GLUCOSE; GLUTAMATE DEHYDROGENASE; GLUTAMATE DEHYDROGENASE 2; GLUTAMIC ACID; NITROGEN; PROLINE; TRICARBOXYLIC ACID; UNCLASSIFIED DRUG;

ARTICLE; ASCOMYCETES; BIOSYNTHESIS; CANDIDA; CANDIDA ALBICANS; CANDIDA GLABRATA; CANDIDA MALTOSA; CANDIDA REUKAUFII; CANDIDA SHEHATAE; CATABOLISM; CONTROLLED STUDY; CULTURE MEDIUM; DEBARYOMYCES HANSENII; ENZYME ACTIVITY; ENZYME MECHANISM; FUNGAL BIOMASS; FUNGAL METABOLISM; FUNGUS CULTURE; FUNGUS GROWTH; FUNGUS MUTANT; GROWTH RATE; KLUYVEROMYCES LACTIS; KLUYVEROMYCES MARXIANUS; LODERROMYCES ELONGISPORUS; MEYEROZYMA GUILLIERMONDII; NONHUMAN; OPEN READING FRAME; PICHIA CAPSULATA; PICHIA JADINII; PRIORITY JOURNAL; RHODOTORULA MUCILAGINOSA; SCHEFFERSOMYCES STIPITIS; TRICHOSPORON BEIGELII; YARROWIA LIPOLYTICA; YEAST;

AMINO ACIDS; ASPARTIC ACID; BIOMASS; CITRIC ACID CYCLE; DNA, FUNGAL; ETHANOL; FERMENTATION; GLUTAMATE DEHYDROGENASE; GLUTAMIC ACID; INDUSTRIAL MICROBIOLOGY; MITOSPORIC FUNGI; MUTAGENESIS, INSERTIONAL; POLYMERASE CHAIN REACTION; PROLINE; TRANSFORMATION, GENETIC;

CANDIDA ALBICANS; CANDIDA GLABRATA; CANDIDA SHEHATAE; DEBARYOMYCES HANSENII; KLUYVEROMYCES LACTIS; PICHIA CAPSULATA; RHODOTORULA MUCILAGINOSA; TRICHOSPORON BEIGELII; YARROWIA LIPOLYTICA;

EID: 79954652288     PISSN: 0749503X     EISSN: 10970061     Source Type: Journal    
DOI: 10.1002/yea.1845     Document Type: Article

References (46)

1. Amartey S, Jeffries TW. 1994. Comparison of corn steep liquor with other nutrients in the fermentation of D-xylose by Pichia stipitis CBS 6054. Biotechnol Lett 16: 211-214.
2. Ausubel FM, Brent R, Kingston RE, et al. 1991. Current Protocols in Molecular Biology. Wiley InterScience: New York.
3. Barth G, Gaillardin C. 1996. Yarrowia lipolytica. In Nonconventional Yeasts in Biotechnology, Wolf K, Breunig KD, Barth G (eds). Springer Verlag: Berlin; 313-388.
4. Bender DA. 1985. Amino Acid Metabolism. Wiley: Chichester.
5. Bergmeyer HU. 1974. Methoden der enzymatischen Analyse. Verlag Chemie: Weinheim.
6. Blank LM, Lehmbeck F, Sauer U. 2005. Metabolic-flux and network analysis in 14 hemiascomycetous yests. FEMS Yeast Res 5: 545-558.
7. Cakir T, Kirdar B, Onsan ZI, et al. 2007. Effect of carbon source pertubations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae. BMC Syst Biol 1: 18.
8. Dellweg H, Rizzi M, Methner H, Debus D. 1984. Xylose fermentation by yeasts 3. Comparison of Pachysolen tannophilus and Pichia stipitis. Biotechnol Lett 6: 395-400.
9. Fiaux J, Cakar ZP, Sonderegger M, et al. 2003. Metabolic-flux profiling of the yeasts Saccharomyces cerevisiae and Pichia stipitis. Eukaryot Cell 2: 170-180.
10. Fredlund E, Blank LM, Sauer U, Passoth V. 2004. Oxygen- and glucose-dependent regulation of central carbon metabolism in Pichia anomala. Appl Environ Microbiol 70: 5905-5911.
11. Fredlund E, Beerlage C, Melin P, et al. 2006. Oxygen and carbon source-regulated expression of PDC and ADH genes in the respiratory yeasts Pichia anomala. Yeast 23: 1137-1149.
12. Gancedo C, Serrano R. 1989. Energy-yielding metabolism. In The Yeasts, vol 3, Rose AH, Harrison JS (eds). Academic Press: London; 205-259.
13. Goldemberg J. 2007. Ethanol for a sustainable energy future. Science 315: 808-810.
14. Grootjen DRJ, van der Lans RGJM, Luyben KCAM. 1990. Effects of the aeration on the fermentation of glucose on the fermentation of glucose and xylose by Pichia stipitis CBS 5773. Enzyme Microb Technol 12: 20-23.
15. Guaragnella N, Butow RA. 2003. ATO3 encoding a putative outward ammonium transporter is an RTG-independent retrograde responsive gene regulated by GCN4 and the Ssy1-Ptr3-Ssy5 amino acid sensor system. J Biol Chem 278: 45882-45887.
16. Guebel DV, Cordenons A, Cascone O, et al. 1992. Influence of the nitrogen source on growth and ethanol production by Pichia stipitis NRRL Y-7124. Biotechnol Lett 14: 1193-1198.
17. Hahn-Hägerdal B, Galbe M, Gorwa-Grauslund MF, et al. 2006. Bio-ethanol-the fuel of tomorrow from the residues of today. Trends Biotechnol 24: 549-559.
18. Hazen KC. 1995. New and emerging yeast pathogens. Clin Microbiol Rev 8: 462.
19. Hedrick LR, Dupont PD. 1968. The utilization of L-amino acids as carbon source by yeasts of the genera Hansenula and Trichosporon. Antonie van Leeuwenhoek 3: 465-473.
20. Herbert D, Phipps PJ, Strange RE. 1971. Chemical analysis of microbial cells. Methods Microbiol 5B: 209-344.
21. Hertz-Fowler C, Pain A. 2010. Genome watch-specialist fungi versatile genomes. Nat Rev Microbiol 5: 332-333.
22. Himmel ME. 2007. Biomass recalcitrance: engineering plants and enzymes for biofuels production. Science 316: 982.
23. Hollenberg CP, Riks WF, Borst P. 1970. The glutamate dehydrogenases of yeast: extra-mitochondrial enzymes. Biochem Biophys Acta 201: 13-19.
24. Jeffries TW. 2006. Engineering yeasts for xylose metabolism. Curr Opin Biotechnol 17: 320-326.
25. Jeffries TW, Grigoriev IV, Grimwood J, et al. 2007. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nat Biotechnol 25: 319-326.
26. Jouhten P, Rintala E, Huuskonen A, et al. 2008. Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A. BMC Syst Biol 2: 60.
27. Klinner U, Fluthgraf S, Freese S, Passoth V. 2005. Aerobic induction of respiro-fermentative growth by decreasing oxygen tensions in the respiratory yeast Pichia stipitis. Appl Microbiol Biotechnol 67: 247-253.
28. Kurtzman CP, Fell JW. (eds). 1998. The Yeasts. A Taxonomic Study, Elsevier: Amsterdam.
29. Kurtzman CP, Robnett CJ. 1998. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 73: 331-371.
30. Kurtzman CP, Suzuki M. 2010. Phylogenetic analysis of the ascomycete yeasts that form coezyme Q-9 and the proposal of the new genera Babjeviella, Meyerozyma, Millerozyma, Priceomyces, and Scheffersomyces. Mycoscience 51: 2-14.
31. Maassen N, Freese S, Schruff B, Passoth V, Klinner U. 2008. Nonhomologhous end joining and homologous recombination DNA repair pathways in integration mutagenesis in the xylose-fermenting yeast Pichia stipitis. FEMS Yeast Res 8: 735-743.
32. Magasanik B, Kaiser CA. 2002. Nitrogen regulation in Saccharomyces cerevisiae. Gene 290: 1-18.
33. Magasanik B. 2003. Ammonia assimilation by Saccharomyces cerevisiae. Eukaryot Cell 2: 827-829.
34. Mauersberger S, Ohkuma M, Schunck WH, Takagi, M. 1996. Candida maltosa. In Nonconventional Yeasts in Biotechnology, Wolf K, Breunig KD, Barth G (eds). Springer Verlag: Berlin; 411-580.
35. Middelhoven WJ, de Jong IM, de Winter M. 1991. Arxula adeninivorans, a yeast assimilating many nitrogenous and aromatic compounds. Antonie van Leeuwenhoek 59: 129-137.
36. Miller SM, Magasanik B. 1990. Role of NAD-linked glutamate dehydrogenase in nitrogen metabolism in Saccharomyces cerevisiae. J Bacteriol 172: 4927-4935.
37. Nguyen NH, Suh SO, Marshall CJ, Blackwell M. 2006. Morphological and ecological similarities: wood-boring beetles associated with novel xylose-fermenting yeast, Spathaspora passalidarum gen. sp. nov. and Candida jeffriesii sp. nov. Mycol Res 110: 1232-1241.
38. Nishioka Y, Silva-Hutner M. 1974. Dimorphism, sensitivity to nystatin and acriflavin uptake in a strain of Candida albicans grown with glutamate as sole nitrogen and carbon source. Sabouraudia 12: 295-301.
39. Paltnikar SS, Lachke AH. 1992. Effect of nitrogen sources on oxidoreductive enzymes and ethanol production during D-xylose fermentation by Candida shehatae. Can J Microbiol 38: 258-260.
40. Parekh S, Wayman M. 1986. Fermentation of cellobiose and wood sugars to ethanol by Candida shehatae and Pichia stipitis. Biotechnol Lett 8: 597-600.
41. Passoth V, Zimmermann M, Klinner U. 1996. Peculiarities of the regulation of fermentation and respiration in the Crabtree-negative, xylose-fermenting yeast Pichia stipitis. Appl Biochem Biotechnol 57/58: 201-212.
42. Piontek M, Hagedorn J, Hollenberg CP, et al. 1998. Two novel gene expression systems based on the yeasts Schwanniomyces occidentalis and Pichia stipitis. Appl Microbiol Biotechnol 50: 331-338.
43. Slininger PJ, Dien BS, Gorsich SW, Liu ZL. 2006. Nitrogen source and mineral optimization enhance D-xylose conversion to ethanol by the yeast Pichia stipitis NRRL Y-7124. Appl Microbiol Biotechnol 72: 1285-1296.
44. Suh SO, Marshall CJ, McHugh JV, Blackwell M. 2003. Wood ingestion by passalid beetles in the presence of xylose-fermenting gut yeasts. Mol Ecol 12: 3137-3145.
45. Walker GM (eds). 1999. Yeast Physiology and Biotechnology. Wiley: Chichester.
46. Yamada Y, Matsuda M, Mikata K. 1995. The phylogenetic-relationships of Pichia jadinii, formerly classified in the genus Hansenula, and related species based on the partial sequence of 18s and 26s ribosomal RNAs (Saccharomycetaceae). Biosci Biotechnol Biochem 59: 518-520.