-
1
-
-
37249032102
-
Dynamic personalities of proteins
-
DOI 10.1038/nature06522, PII NATURE06522
-
K. Henzler-Wildman, and D. Kern Dynamic personalities of proteins Nature 450 2007 964 972 (Pubitemid 350273626)
-
(2007)
Nature
, vol.450
, Issue.7172
, pp. 964-972
-
-
Henzler-Wildman, K.1
Kern, D.2
-
2
-
-
3342993181
-
Hydrogen exchange methods to study protein folding
-
DOI 10.1016/j.ymeth.2004.03.005, PII S1046202304000519
-
M.M. Krishna, L. Hoang, Y. Lin, and S.W. Englander Hydrogen exchange methods to study protein folding Methods 34 2004 51 64 (Pubitemid 38993208)
-
(2004)
Methods
, vol.34
, Issue.1
, pp. 51-64
-
-
Krishna, M.M.G.1
Hoang, L.2
Lin, Y.3
Englander, S.W.4
-
3
-
-
70349613463
-
Analysis of protein conformation and dynamics by hydrogen/deuterium exchange MS
-
J.R. Engen Analysis of protein conformation and dynamics by hydrogen/deuterium exchange MS Anal. Chem. 81 2009 7870 7875
-
(2009)
Anal. Chem.
, vol.81
, pp. 7870-7875
-
-
Engen, J.R.1
-
5
-
-
33751337111
-
Semi-automated data processing of hydrogen exchange mass spectra using HX-Express
-
DOI 10.1016/j.jasms.2006.07.025, PII S1044030506006891
-
D.D. Weis, J.R. Engen, and I.J. Kass Semi-automated data processing of hydrogen exchange mass spectra using HX-Express J. Am. Soc. Mass. Spectrom. 17 2006 1700 1703 (Pubitemid 44809951)
-
(2006)
Journal of the American Society for Mass Spectrometry
, vol.17
, Issue.12
, pp. 1700-1703
-
-
Weis, D.D.1
Engen, J.R.2
Kass, I.J.3
-
6
-
-
34249341670
-
The Deuterator: Software for the determination of backbone amide deuterium levels from H/D exchange MS data
-
B.D. Pascal, M.J. Chalmers, S.A. Busby, C.C. Mader, M.R. Southern, N.F. Tsinoremas, and P.R. Griffin The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data BMC Bioinformatics 8 2007 156
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 156
-
-
Pascal, B.D.1
Chalmers, M.J.2
Busby, S.A.3
Mader, C.C.4
Southern, M.R.5
Tsinoremas, N.F.6
Griffin, P.R.7
-
7
-
-
62149090281
-
HD desktop: An integrated platform for the analysis and visualization of H/D exchange data
-
B.D. Pascal, M.J. Chalmers, S.A. Busby, and P.R. Griffin HD desktop: an integrated platform for the analysis and visualization of H/D exchange data J. Am. Soc. Mass. Spectrom. 20 2009 601 610
-
(2009)
J. Am. Soc. Mass. Spectrom.
, vol.20
, pp. 601-610
-
-
Pascal, B.D.1
Chalmers, M.J.2
Busby, S.A.3
Griffin, P.R.4
-
8
-
-
67649171006
-
Hydra: Software for tailored processing of H/D exchange data from MS or tandem MS analyses
-
G.W. Slysz, C.A. Baker, B.M. Bozsa, A. Dang, A.J. Percy, M. Bennett, and D.C. Schriemer Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses BMC Bioinformatics 10 2009 162
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 162
-
-
Slysz, G.W.1
Baker, C.A.2
Bozsa, B.M.3
Dang, A.4
Percy, A.J.5
Bennett, M.6
Schriemer, D.C.7
-
9
-
-
33749326831
-
Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis
-
DOI 10.1016/j.jasms.2006.05.014, PII S1044030506005393
-
D.D. Weis, T.E. Wales, J.R. Engen, M. Hotchko, and L.F. Ten Eyck Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis J. Am. Soc. Mass. Spectrom. 17 2006 1498 1509 (Pubitemid 44635272)
-
(2006)
Journal of the American Society for Mass Spectrometry
, vol.17
, Issue.11
, pp. 1498-1509
-
-
Weis, D.D.1
Wales, T.E.2
Engen, J.R.3
Hotchko, M.4
Ten Eyck, L.F.5
-
10
-
-
77954194030
-
Deuteration distribution estimation with improved sequence coverage for HX/MS experiments
-
X. Lou, M. Kirchner, B.Y. Renard, U. Kothe, S. Boppel, C. Graf, C.T. Lee, J.A. Steen, H. Steen, M.P. Mayer, and F.A. Hamprecht Deuteration distribution estimation with improved sequence coverage for HX/MS experiments Bioinformatics 26 2010 1535 1541
-
(2010)
Bioinformatics
, vol.26
, pp. 1535-1541
-
-
Lou, X.1
Kirchner, M.2
Renard, B.Y.3
Kothe, U.4
Boppel, S.5
Graf, C.6
Lee, C.T.7
Steen, J.A.8
Steen, H.9
Mayer, M.P.10
Hamprecht, F.A.11
-
11
-
-
60649091300
-
NITPICK: Peak identification for mass spectrometry data
-
B.Y. Renard, M. Kirchner, H. Steen, J.A. Steen, and F.A. Hamprecht NITPICK: peak identification for mass spectrometry data BMC Bioinformatics 9 2008 355
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 355
-
-
Renard, B.Y.1
Kirchner, M.2
Steen, H.3
Steen, J.A.4
Hamprecht, F.A.5
-
12
-
-
62049084010
-
Spatially and kinetically resolved changes in the conformational dynamics of the Hsp90 chaperone machine
-
C. Graf, M. Stankiewicz, G. Kramer, and M.P. Mayer Spatially and kinetically resolved changes in the conformational dynamics of the Hsp90 chaperone machine EMBO J. 28 2009 602 613
-
(2009)
EMBO J.
, vol.28
, pp. 602-613
-
-
Graf, C.1
Stankiewicz, M.2
Kramer, G.3
Mayer, M.P.4
-
13
-
-
0023705432
-
Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR
-
H. Roder, G.A. Elove, and S.W. Englander Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR Nature 335 1988 700 704
-
(1988)
Nature
, vol.335
, pp. 700-704
-
-
Roder, H.1
Elove, G.A.2
Englander, S.W.3
-
14
-
-
0345803934
-
32 by Amide Hydrogen Exchange
-
DOI 10.1074/jbc.M307160200
-
W. Rist, T.J.D. Jørgensen, P. Roepstorff, B. Bukau, and M.P. Mayer Mapping temperature-induced conformational changes in the Escherichia coli heat shock transcription factor sigma 32 by amide hydrogen exchange J. Biol. Chem. 278 2003 51415 51421 (Pubitemid 38020381)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.51
, pp. 51415-51421
-
-
Rist, W.1
Jorgensen, T.J.D.2
Roepstorff, P.3
Bukau, B.4
Mayer, M.P.5
-
15
-
-
33745183353
-
Amide hydrogen exchange reveals conformational changes in hsp70 chaperones important for allosteric regulation
-
W. Rist, C. Graf, B. Bukau, and M.P. Mayer Amide hydrogen exchange reveals conformational changes in hsp70 chaperones important for allosteric regulation J. Biol. Chem. 281 2006 16493 16501
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 16493-16501
-
-
Rist, W.1
Graf, C.2
Bukau, B.3
Mayer, M.P.4
-
16
-
-
78650170327
-
Improved Parametric Time Warping for proteomics
-
in press doi:10.1016/j.chemolab.2010.04.008
-
T.G. Bloemberg, J. Gerretzen, H.J.P. Wouters, J. Gloerich, M. van Dael, H.J.C.T. Wessels, L.P. van den Heuvel, P.H.C. Eilers, L.M.C. Buydens, R. Wehrens, Improved Parametric Time Warping for proteomics, Chemom. Intelligent Lab. Syst., in press, doi:10.1016/j.chemolab.2010.04.008.
-
Chemom. Intelligent Lab. Syst.
-
-
Bloemberg, T.G.1
Gerretzen, J.2
Wouters, H.J.P.3
Gloerich, J.4
Van Dael, M.5
Wessels, H.J.C.T.6
Heuvel Den Van, L.P.7
Eilers, P.H.C.8
Buydens, L.M.C.9
Wehrens, R.10
-
17
-
-
79954629027
-
Simultaneous multiple alignment for LC/MS peak lists
-
B.M. Voss, B.Y. Renard, A. Kreshuk, M. Hanselmann, U. Koethe, H. Steen, J.A.J. Steen, M. Kirchner, and F.A. Hamprecht Simultaneous multiple alignment for LC/MS peak lists Conference of the American Society for Mass Spectrometry (ASMS) 2009 (A journal article and the corresponding C++ package are currently in preparation)
-
(2009)
Conference of the American Society for Mass Spectrometry (ASMS)
-
-
Voss, B.M.1
Renard, B.Y.2
Kreshuk, A.3
Hanselmann, M.4
Koethe, U.5
Steen, H.6
Steen, J.A.J.7
Kirchner, M.8
Hamprecht, F.A.9
-
18
-
-
33746930864
-
A uniform proteomics MS/MS analysis platform utilizing open XML file formats
-
A. Keller, J. Eng, N. Zhang, X.J. Li, and R. Aebersold A uniform proteomics MS/MS analysis platform utilizing open XML file formats Mol. Syst. Biol. 1 2005 0017
-
(2005)
Mol. Syst. Biol.
, vol.1
, pp. 0017
-
-
Keller, A.1
Eng, J.2
Zhang, N.3
Li, X.J.4
Aebersold, R.5
-
19
-
-
33644761306
-
Hydrogen exchange mass spectrometry for the analysis of protein dynamics
-
T.E. Wales, and J.R. Engen Hydrogen exchange mass spectrometry for the analysis of protein dynamics Mass. Spectrom. Rev. 25 2006 158 170
-
(2006)
Mass. Spectrom. Rev.
, vol.25
, pp. 158-170
-
-
Wales, T.E.1
Engen, J.R.2
-
20
-
-
0030696119
-
Identification and localization of slow, natural, cooperative unfolding in the hematopoietic cell kinase SH3 domain by amide hydrogen exchange and mass spectrometry
-
DOI 10.1021/bi971635m
-
J.R. Engen, T.E. Smithgall, W.H. Gmeiner, and D.L. Smith Identification and localization of slow, natural, cooperative unfolding in the hematopoietic cell kinase SH3 domain by amide hydrogen exchange and mass spectrometry Biochemistry 36 1997 14384 14391 (Pubitemid 27509930)
-
(1997)
Biochemistry
, vol.36
, Issue.47
, pp. 14384-14391
-
-
Engen, J.R.1
Smithgall, T.E.2
Gmeiner, W.H.3
Smith, D.L.4
-
21
-
-
33645073892
-
Partial unfolding of diverse SH3 domains on a wide timescale
-
T.E. Wales, and J.R. Engen Partial unfolding of diverse SH3 domains on a wide timescale J. Mol. Biol. 357 2006 1592 1604
-
(2006)
J. Mol. Biol.
, vol.357
, pp. 1592-1604
-
-
Wales, T.E.1
Engen, J.R.2
-
22
-
-
33750008686
-
Structural analysis of E. coli hsp90 reveals dramatic nucleotide-dependent conformational rearrangements
-
DOI 10.1016/j.cell.2006.09.027, PII S009286740601275X
-
A.K. Shiau, S.F. Harris, D.R. Southworth, and D.A. Agard Structural analysis of E. coli hsp90 reveals dramatic nucleotide-dependent conformational rearrangements Cell 127 2006 329 340 (Pubitemid 44572381)
-
(2006)
Cell
, vol.127
, Issue.2
, pp. 329-340
-
-
Shiau, A.K.1
Harris, S.F.2
Southworth, D.R.3
Agard, D.A.4
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