메뉴 건너뛰기




Volumn 39, Issue 7, 2011, Pages

A simple and efficient method to search for selected primary transcripts: Non-coding and antisense RNAs in the human pathogen Enterococcus faecalis

Author keywords

[No Author keywords available]

Indexed keywords

ANTITOXIN; BACTERIAL RNA; MESSENGER RNA; RNA POLYMERASE; TXPA TOXIN; UNCLASSIFIED DRUG; UNTRANSLATED RNA;

EID: 79954609527     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr012     Document Type: Article
Times cited : (52)

References (86)
  • 1
    • 0037471164 scopus 로고    scopus 로고
    • Microbiology. The thin line between gut commensal and pathogen
    • Gilmore, M.S. and Ferretti, J.J. (2003) Microbiology. The thin line between gut commensal and pathogen. Science, 299, 1999-2002.
    • (2003) Science , vol.299 , pp. 1999-2002
    • Gilmore, M.S.1    Ferretti, J.J.2
  • 2
    • 3042712911 scopus 로고    scopus 로고
    • Commensal bacteria, redox stress, and colorectal cancer: Mechanisms and models
    • Huycke, M.M. and Gaskins, H.R. (2004) Commensal bacteria, redox stress, and colorectal cancer: mechanisms and models. Exp. Biol. Med., 229, 586-597. (Pubitemid 38885671)
    • (2004) Experimental Biology and Medicine , vol.229 , Issue.7 , pp. 586-597
    • Huycke, M.M.1    Gaskin, H.R.2
  • 3
    • 34248332179 scopus 로고    scopus 로고
    • Expression of virulence-related genes by Enterococcus faecalis in response to different environments
    • DOI 10.1016/j.syapm.2006.08.002, PII S0723202006001056
    • Hew, C.M., Korakli, M. and Vogel, R.F. (2006) Expression of virulence-related genes by Enterococcus faecalis in response to different environments. Syst. Appl. Microbiol., 30, 257-267. (Pubitemid 46734629)
    • (2007) Systematic and Applied Microbiology , vol.30 , Issue.4 , pp. 257-267
    • Hew, C.M.1    Korakli, M.2    Vogel, R.F.3
  • 5
    • 77953955787 scopus 로고    scopus 로고
    • Genome-based insights into the evolution of enterococci
    • Van Schaik, W. and Willems, R.J. (2010) Genome-based insights into the evolution of enterococci. Clin. Microbiol. Infect., 16, 527-532.
    • (2010) Clin. Microbiol. Infect. , vol.16 , pp. 527-532
    • Van Schaik, W.1    Willems, R.J.2
  • 6
    • 0035145028 scopus 로고    scopus 로고
    • Regulation of VanA- and VanB-type glycopeptide resistance in enterococci
    • DOI 10.1128/AAC.45.2.375-381.2001
    • Arthur, M. and Quintiliani, R. Jr (2001) Regulation of VanA-and VanB-type glycopeptide resistance in enterococci. Antimicrob. Agents Chemother., 45, 375-381. (Pubitemid 32105270)
    • (2001) Antimicrobial Agents and Chemotherapy , vol.45 , Issue.2 , pp. 375-381
    • Arthur, M.1    Quintiliani Jr., R.2
  • 7
    • 0037011936 scopus 로고    scopus 로고
    • Two-component regulator of Enterococcus faecalis cytolysin responds to quorum-sensing autoinduction
    • DOI 10.1038/415084a
    • Haas, W., Shepard, B.D. and Gilmore, M.S. (2002) Two-component regulator of Enterococcus faecalis cytolysin responds to quorum-sensing autoinduction. Nature, 415, 84-87. (Pubitemid 34062454)
    • (2002) Nature , vol.415 , Issue.6867 , pp. 84-87
    • Haas, W.1    Shepard, B.D.2    Gilmore, M.S.3
  • 8
    • 0037071849 scopus 로고    scopus 로고
    • Modulation of virulence within a pathogenicity island in vancomycin-resistant Enterococcus faecalis
    • DOI 10.1038/nature00802
    • Shankar, N., Baghdayan, A.S. and Gilmore, M.S. (2002) Modulation of virulence within a pathogenicity island in vancomycin-resistant Enterococcus faecalis. Nature, 417, 746-750. (Pubitemid 34640628)
    • (2002) Nature , vol.417 , Issue.6890 , pp. 746-750
    • Shankar, N.1    Baghdayan, A.S.2    Gilmore, M.S.3
  • 9
    • 2442685544 scopus 로고    scopus 로고
    • Enterococcal cytolysin: Activities and association with other virulence traits in a pathogenicity island
    • DOI 10.1078/1438-4221-00301
    • Shankar, N., Coburn, P., Pillar, C., Haas, W. and Gilmore, M. (2004) Enterococcal cytolysin: activities and association with other virulence traits in a pathogenicity island. Int. J. Med. Microbiol., 293, 609-618. (Pubitemid 38667586)
    • (2004) International Journal of Medical Microbiology , vol.293 , Issue.7-8 , pp. 609-618
    • Shankar, N.1    Coburn, P.2    Pilla, C.3    Haas, W.4    Gilmore, M.5
  • 10
    • 33646011978 scopus 로고    scopus 로고
    • Comparison of OG1RF and an isogenic fsrB deletion mutant by transcriptional analysis: The Fsr system of Enterococcus faecalis is more than the activator of gelatinase and serine protease
    • Bourgogne, A., Hilsenbeck, S.G, Dunny, GM. and Murray, B.E. (2006) Comparison of OG1RF and an isogenic fsrB deletion mutant by transcriptional analysis: the Fsr system of Enterococcus faecalis is more than the activator of gelatinase and serine protease. J. Bacteriol., 188, 2875-2884.
    • (2006) J. Bacteriol. , vol.188 , pp. 2875-2884
    • Bourgogne, A.1    Hilsenbeck, S.G.2    Dunny, G.M.3    Murray, B.E.4
  • 11
    • 34548516376 scopus 로고    scopus 로고
    • EbpR is important for biofilm formation by activating expression of the endocarditis and biofilm-associated pilus operon (ebpABC) of Enterococcus faecalis OG1RF
    • DOI 10.1128/JB.00594-07
    • Bourgogne, A., Singh, K.V., Fox, KA., Pflughoeft, K.J., Murray, B.E. and Garsin, DA. (2007) EbpR is important for biofilm formation by activating expression of the endocarditis and biofilm-associated pilus operon (ebpABC) of Enterococcus faecalis OG1RF. J. Bacteriol., 189, 6490-6493. (Pubitemid 47378660)
    • (2007) Journal of Bacteriology , vol.189 , Issue.17 , pp. 6490-6493
    • Bourgogne, A.1    Singh, K.V.2    Fox, K.A.3    Pflughoeft, K.J.4    Murray, B.E.5    Garsin, D.A.6
  • 13
    • 65249083873 scopus 로고    scopus 로고
    • Functional genomics of Enterococcus faecalis: Multiple novel genetic determinants for biofilm formation in the core genome
    • Ballering, K.S., Kristich, C.J., Grindle, S.M., Oromendia, A., Beattie, D.T. and Dunny, GM. (2009) Functional genomics of Enterococcus faecalis: multiple novel genetic determinants for biofilm formation in the core genome. J. Bacteriol., 191, 2806-2814.
    • (2009) J. Bacteriol. , vol.191 , pp. 2806-2814
    • Ballering, K.S.1    Kristich, C.J.2    Grindle, S.M.3    Oromendia, A.4    Beattie, D.T.5    Dunny, G.M.6
  • 14
    • 77950532315 scopus 로고    scopus 로고
    • The extracytoplasmic function sigma factor SigV plays a key role in the original model of lysozyme resistance and virulence of Enterococcus faecalis
    • Le Jeune, A., Torelli, R., Sanguinetti, M., Giard, J.C., Hartke, A., Auffray, Y. and BenachourA. (2010) The extracytoplasmic function sigma factor SigV plays a key role in the original model of lysozyme resistance and virulence of Enterococcus faecalis. PLoS One, 5, e9658.
    • (2010) PLoS One , vol.5
    • Le Jeune, A.1    Torelli, R.2    Sanguinetti, M.3    Giard, J.C.4    Hartke, A.5    Auffray, Y.6    Benachour, A.7
  • 15
    • 63149194170 scopus 로고    scopus 로고
    • Multiple posttranscriptional regulatory mechanisms partner to control ethanolamine utilization in Enterococcus faecalis
    • Fox, KA., Ramesh, A., Stearns, J.E., BourgogneA., Reyes-Jara, A., Winkler, W.C. and Garsin, DA. (2009) Multiple posttranscriptional regulatory mechanisms partner to control ethanolamine utilization in Enterococcus faecalis. Proc Natl Acad. Sci. USA, 106, 4435-4440.
    • (2009) Proc Natl Acad. Sci. USA , vol.106 , pp. 4435-4440
    • Fox, K.A.1    Ramesh, A.2    Stearns, J.E.3    Bourgogne, A.4    Reyes-Jara, A.5    Winkler, W.C.6    Garsin, D.A.7
  • 16
    • 61749088917 scopus 로고    scopus 로고
    • Bacterial chromosome-encoded small regulatory RNAs
    • Brantl, S. (2009) Bacterial chromosome-encoded small regulatory RNAs. Future Microbiol., 4, 85-103.
    • (2009) Future Microbiol. , vol.4 , pp. 85-103
    • Brantl, S.1
  • 17
    • 58149375464 scopus 로고    scopus 로고
    • Small regulatory non-coding RNAs in bacteria: Physiology and mechanistic aspects
    • Repoila, F. and Darfeuille, F. (2009) Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects. Biol. Cell, 101, 117-131.
    • (2009) Biol. Cell , vol.101 , pp. 117-131
    • Repoila, F.1    Darfeuille, F.2
  • 18
    • 34247099372 scopus 로고    scopus 로고
    • Regulatory mechanisms employed by cis-encoded antisense RNAs
    • DOI 10.1016/j.mib.2007.03.012, PII S136952740700029X, Cell Regulation (RNA Special Issue)
    • Brantl, S. (2007) Regulatory mechanisms employed by cis-encoded antisense RNAs. Curr. Opin. Microbiol., 10, 102-109. (Pubitemid 46590052)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.2 , pp. 102-109
    • Brantl, S.1
  • 19
    • 0037031594 scopus 로고    scopus 로고
    • An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes
    • DOI 10.1016/S0092-8674(02)00905-4
    • Johansson, J., Mandin, P., Renzoni, A., Chiaruttini, C., Springer, M. and Cossart, P. (2002) An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes. Cell, 110, 551-561. (Pubitemid 35247836)
    • (2002) Cell , vol.110 , Issue.5 , pp. 551-561
    • Johansson, J.1    Mandin, P.2    Renzoni, A.3    Chiaruttini, C.4    Springer, M.5    Cossart, P.6
  • 21
    • 67650713931 scopus 로고    scopus 로고
    • The structural and functional diversity of metabolite-binding riboswitches
    • Roth, A. and Breaker, R.R. (2009) The structural and functional diversity of metabolite-binding riboswitches. Annu. Rev. Biochem., 78, 305-334.
    • (2009) Annu. Rev. Biochem. , vol.78 , pp. 305-334
    • Roth, A.1    Breaker, R.R.2
  • 22
    • 77956148437 scopus 로고    scopus 로고
    • A bacterial mRNA leader that employs different mechanisms to sense disparate intracellular signals
    • Park, S.Y., Cromie, M.J., Lee, E.J. and Groisman, EA. (2010) A bacterial mRNA leader that employs different mechanisms to sense disparate intracellular signals. Cell, 142, 737-748.
    • (2010) Cell , vol.142 , pp. 737-748
    • Park, S.Y.1    Cromie, M.J.2    Lee, E.J.3    Groisman, E.A.4
  • 23
    • 0029113833 scopus 로고
    • Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII
    • Morfeldt, E., Taylor, D., von GabainA. and Arvidson, S. (1995) Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII. EMBO J., 14, 4569-4577.
    • (1995) EMBO J. , vol.14 , pp. 4569-4577
    • Morfeldt, E.1    Gabaina. Von, T.D.2    Arvidson, S.3
  • 24
    • 38049115217 scopus 로고    scopus 로고
    • A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide
    • Wadler, C.S. and Vanderpool, C.K. (2007) A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide. Proc Natl Acad. Sci. USA, 104, 20454-20459.
    • (2007) Proc Natl Acad. Sci. USA , vol.104 , pp. 20454-20459
    • Wadler, C.S.1    Vanderpool, C.K.2
  • 25
    • 56049106090 scopus 로고    scopus 로고
    • Overexpression of the LexA-regulated tisAB RNA in E. coli inhibits SOS functions; Implications for regulation of the SOS response
    • Weel-Sneve, R., Bjoras, M. and Kristiansen, K.I. (2008) Overexpression of the LexA-regulated tisAB RNA in E. coli inhibits SOS functions; implications for regulation of the SOS response. Nucleic Acids Res., 36, 6249-6259.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 6249-6259
    • Weel-Sneve, R.1    Bjoras, M.2    Kristiansen, K.I.3
  • 26
    • 69749123311 scopus 로고    scopus 로고
    • Caught at its own game: Regulatory small RNA inactivated by an inducible transcript mimicking its target
    • Figueroa-Bossi, N., Valentini, M., Malleret, L. and Bossi, L. (2009) Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target. Genes Dev., 23, 2004-2015.
    • (2009) Genes Dev. , vol.23 , pp. 2004-2015
    • Figueroa-Bossi, N.1    Valentini, M.2    Malleret, L.3    Bossi, L.4
  • 29
    • 77952157242 scopus 로고    scopus 로고
    • A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon
    • Gimpel, M., Heidrich, N., Mader, U., Krugel, H. and Brantl, S. (2010) A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon. Mol. Microbiol., 76, 990-1009.
    • (2010) Mol. Microbiol. , vol.76 , pp. 990-1009
    • Gimpel, M.1    Heidrich, N.2    Mader, U.3    Krugel, H.4    Brantl, S.5
  • 30
    • 0038187589 scopus 로고    scopus 로고
    • Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: The RpoS paradigm
    • DOI 10.1046/j.1365-2958.2003.03454.x
    • Repoila, F., Majdalani, N. and Gottesman, S. (2003) Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm. Mol. Microbiol., 48, 855-861. (Pubitemid 36628254)
    • (2003) Molecular Microbiology , vol.48 , Issue.4 , pp. 855-861
    • Repoila, F.1    Majdalani, N.2    Gottesman, S.3
  • 31
    • 34247101054 scopus 로고    scopus 로고
    • Small noncoding RNAs controlling pathogenesis
    • DOI 10.1016/j.mib.2007.03.004, PII S1369527407000215, Cell Regulation (RNA Special Issue)
    • Toledo-Arana, A., Repoila, F. and Cossart, P. (2007) Small non-coding RNAs controlling pathogenesis. Curr. Opin. Microbiol., 10, 182-188. (Pubitemid 46590044)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.2 , pp. 182-188
    • Toledo-Arana, A.1    Repoila, F.2    Cossart, P.3
  • 32
    • 75749085389 scopus 로고    scopus 로고
    • Non-coding RNA of glutamine synthetase i modulates antibiotic production in Streptomyces coelicolor A3(2)
    • DAlia, D., Nieselt, K., Steigele, S., Muller, J., Verburg, I. and Takano, E. (2010) Non-coding RNA of glutamine synthetase I modulates antibiotic production in Streptomyces coelicolor A3(2). J. Bacteriol., 192, 1160-1164.
    • (2010) J. Bacteriol. , vol.192 , pp. 1160-1164
    • Dalia, D.1    Nieselt, K.2    Steigele, S.3    Muller, J.4    Verburg, I.5    Takano, E.6
  • 33
    • 73849103559 scopus 로고    scopus 로고
    • An overview of RNAs with regulatory functions in gram-positive bacteria
    • Romby, P. and Charpentier, E. (2010) An overview of RNAs with regulatory functions in gram-positive bacteria. Cell Mol. Life Sci., 67, 217-237.
    • (2010) Cell Mol. Life Sci. , vol.67 , pp. 217-237
    • Romby, P.1    Charpentier, E.2
  • 34
    • 72849114230 scopus 로고    scopus 로고
    • Prokaryotic transcriptomics: A new view on regulation, physiology and pathogenicity
    • Sorek, R. and Cossart, P. (2010) Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity. Nat. Rev. Genet., 11, 9-16.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 9-16
    • Sorek, R.1    Cossart, P.2
  • 35
    • 77952719228 scopus 로고    scopus 로고
    • Deciphering the physiological blueprint of a bacterial cell: Revelations of unanticipated complexity in transcriptome and proteome
    • Toledo-Arana, A. and Solano, C. (2010) Deciphering the physiological blueprint of a bacterial cell: revelations of unanticipated complexity in transcriptome and proteome. Bioessays, 32, 461-467.
    • (2010) Bioessays , vol.32 , pp. 461-467
    • Toledo-Arana, A.1    Solano, C.2
  • 36
    • 77950349491 scopus 로고    scopus 로고
    • Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome
    • Albrecht, M., Sharma, C.M., Reinhardt, R., Vogel, J. and Rudel, T. (2010) Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome. Nucleic Acids Res., 38, 868-877.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 868-877
    • Albrecht, M.1    Sharma, C.M.2    Reinhardt, R.3    Vogel, J.4    Rudel, T.5
  • 38
    • 78049392640 scopus 로고    scopus 로고
    • Identification of regulatory RNAs in Bacillus subtilis
    • Irnov, I., Sharma, C.M., Vogel, J. and Winkler, W.C. (2010) Identification of regulatory RNAs in Bacillus subtilis. Nucleic Acids Res., 38, 6637-6651.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 6637-6651
    • Irnov, I.1    Sharma, C.M.2    Vogel, J.3    Winkler, W.C.4
  • 41
    • 34247163202 scopus 로고    scopus 로고
    • 6S RNA: A small RNA regulator of transcription
    • DOI 10.1016/j.mib.2007.03.008, PII S1369527407000252, Cell Regulation (RNA Special Issue)
    • Wassarman, K.M. (2007) 6S RNA: a small RNA regulator of transcription. Curr. Opin. Microbiol., 10, 164-168. (Pubitemid 46590048)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.2 , pp. 164-168
    • Wassarman, K.M.1
  • 42
    • 33847371621 scopus 로고    scopus 로고
    • Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets
    • DOI 10.1093/nar/gkl1096
    • Mandin, P., Repoila, F., Vergassola, M., Geissmann, T. and Cossart, P. (2007) Identification of new non-coding RNAs in Listeria monocytogenes and prediction of mRNA targets. Nucleic Acids Res., 35, 962-974. (Pubitemid 46344721)
    • (2007) Nucleic Acids Research , vol.35 , Issue.3 , pp. 962-974
    • Mandin, P.1    Geissmann, T.2    Cossart, P.3    Repoila, F.4    Vergassola, M.5
  • 44
    • 33847366112 scopus 로고    scopus 로고
    • Approaches to identify novel non-messenger RNAs in Bacteria and to investigate their biological functions: Functional analysis of identified non-mRNAs
    • In Hartmann, R.K., Bindereif, A., Schon, A. and and Westhof, E. (eds) Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
    • Wagner, E.G and Vogel, J. (2005) Approaches to identify novel non-messenger RNAs in Bacteria and to investigate their biological functions: functional analysis of identified non-mRNAs. In Hartmann, R.K., Bindereif, A., Schon, A. and and Westhof, E. (eds), Handbook of RNA Biochemistry. Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, pp. 614-642.
    • (2005) Handbook of RNA Biochemistry , pp. 614-642
    • Wagner, E.G.1    Vogel, J.2
  • 45
    • 0035954304 scopus 로고    scopus 로고
    • Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
    • DOI 10.1016/S0960-9822(01)00270-6
    • Argaman, L., Hershberg, R., Vogel, J., Bejerano, G, Wagner, E.G, Margalit, H. and Altuvia, S. (2001) Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr. Biol., 11, 941-950. (Pubitemid 32589185)
    • (2001) Current Biology , vol.11 , Issue.12 , pp. 941-950
    • Argaman, L.1    Hershberg, R.2    Vogel, J.3    Bejerano, G.4    Wagner, E.G.H.5    Margalit, H.6    Altuvia, S.7
  • 46
    • 0035395606 scopus 로고    scopus 로고
    • Identification of novel small RNAs using comparative genomics and microarrays
    • DOI 10.1101/gad.901001
    • Wassarman, K.M., Repoila, F., Rosenow, C., Storz, G and Gottesman, S. (2001) Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev., 15, 1637-1651. (Pubitemid 32702586)
    • (2001) Genes and Development , vol.15 , Issue.13 , pp. 1637-1651
    • Wassarman, K.M.1    Repoila, F.2    Rosenow, C.3    Storz, G.4    Gottesman, S.5
  • 47
    • 26444600764 scopus 로고    scopus 로고
    • Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains
    • DOI 10.1073/pnas.0503838102
    • Pichon, C. and Felden, B. (2005) Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains. Proc Natl Acad. Sci. USA, 102, 14249-14254. (Pubitemid 41429684)
    • (2005) Proceedings of the National Academy of Sciences of the United States of America , vol.102 , Issue.40 , pp. 14249-14254
    • Pichon, C.1    Felden, B.2
  • 51
    • 66449091512 scopus 로고    scopus 로고
    • Single-pass classification of all non-coding sequences in a bacterial genome using phylogenetic profiles
    • Marchais, A., Naville, M., Bohn, C., Bouloc, P. and Gautheret, D. (2009) Single-pass classification of all non-coding sequences in a bacterial genome using phylogenetic profiles. Genome Res., 19, 1084-1092.
    • (2009) Genome Res. , vol.19 , pp. 1084-1092
    • Marchais, A.1    Naville, M.2    Bohn, C.3    Bouloc, P.4    Gautheret, D.5
  • 52
    • 0029845782 scopus 로고    scopus 로고
    • Sensitive detection of bacterial transcription initiation sites and differentiation from RNA processing sites in the pheromone-induced plasmid transfer system of Enterococcus faecalis
    • DOI 10.1073/pnas.93.15.7794
    • Bensing, B.A., Meyer, B.J. and Dunny, GM. (1996) Sensitive detection of bacterial transcription initiation sites and differentiation from RNA processing sites in the pheromone-induced plasmid transfer system of Enterococcus faecalis. Proc Natl Acad. Sci. USA, 93, 7794-7799. (Pubitemid 26277117)
    • (1996) Proceedings of the National Academy of Sciences of the United States of America , vol.93 , Issue.15 , pp. 7794-7799
    • Bensing, B.A.1    Meyer, B.J.2    Dunny, G.M.3
  • 53
    • 0032539857 scopus 로고    scopus 로고
    • 3' exoribonucleolytic trimming is a common feature of the maturation of small stable RNAs in Escherichia coli
    • Li, Z., Pandit, S. and Deutscher, M.P. (1998) 3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc Natl Acad. Sci. USA, 95, 2856-2861.
    • (1998) Proc Natl Acad. Sci. USA , vol.95 , pp. 2856-2861
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 54
    • 0034897153 scopus 로고    scopus 로고
    • Changes in rRNA levels during stress invalidates results from mRNA blotting: Fluorescence in situ rRNA hybridization permits renormalization for estimation of cellular mRNA levels
    • DOI 10.1128/JB.183.16.4747-4751.2001
    • Hansen, M.C., Nielsen, A.K., Molin, S., Hammer, K. and Kilstrup, M. (2001) Changes in rRNA levels during stress invalidates results from mRNA blotting: fluorescence in situ rRNA hybridization permits renormalization for estimation of cellular mRNA levels. J. Bacteriol., 183, 4747-4751. (Pubitemid 32708959)
    • (2001) Journal of Bacteriology , vol.183 , Issue.16 , pp. 4747-4751
    • Hansen, M.C.1    Nielsen, A.K.2    Molin, S.3    Hammer, K.4    Kilstrup, M.5
  • 55
    • 33748781702 scopus 로고    scopus 로고
    • Implicaton of (Mn)superoxide dismutase of Enterococcus faecalis in oxidative stress responses and survival inside macrophages
    • DOI 10.1099/mic.0.28922-0
    • Verneuil, N., Maze, A., Sanguinetti, M., Laplace, J.M., Benachour, A., AuffrayY., Giard, J.C. and Hartke, A. (2006) Implication of (Mn)superoxide dismutase of Enterococcus faecalis in oxidative stress responses and survival inside macrophages. Microbiology, 152, 2579-2589. (Pubitemid 44405083)
    • (2006) Microbiology , vol.152 , Issue.9 , pp. 2579-2589
    • Verneuil, N.1    Maze, A.2    Sanguinetti, M.3    Laplace, J.-M.4    Benachour, A.5    Auffray, Y.6    Giard, J.-C.7    Hartke, A.8
  • 56
    • 34249901823 scopus 로고    scopus 로고
    • New insights into the Enterococcus faecalis CroRS two-component system obtained using a differential-display random arbitrarily primed PCR approach
    • DOI 10.1128/AEM.00390-07
    • Le Breton, Y., Muller, C., AuffrayY. and Rince, A. (2007) New insights into the Enterococcus faecalis CroRS two-component system obtained using a differential-display random arbitrarily primed PCR approach. Appl. Environ. Microbiol., 73, 3738-3741. (Pubitemid 46871467)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.11 , pp. 3738-3741
    • Le Breton, Y.1    Muller, C.2    Auffray, Y.3    Rince, A.4
  • 58
    • 0035038936 scopus 로고    scopus 로고
    • Characterization of fsr, a regulator controlling expression of gelatinase and serine protease in Enterococcus faecalis OG1RF
    • DOI 10.1128/JB.183.11.3372-3382.2001
    • Qin, X., Singh, K.V., Weinstock, GM. and Murray, B.E. (2001) Characterization of fsr, a regulator controlling expression of gelatinase and serine protease in Enterococcus faecalis OG1RF. J. Bacteriol., 183, 3372-3382. (Pubitemid 32448601)
    • (2001) Journal of Bacteriology , vol.183 , Issue.11 , pp. 3372-3382
    • Qin, X.1    Singh, K.V.2    Weinstock, G.M.3    Murray, B.E.4
  • 59
    • 70349462763 scopus 로고    scopus 로고
    • Evidence for a major role of antisense RNAs in cyanobacterial gene regulation
    • Georg, J., Voss, B., Scholz, I., Mitschke, J., Wilde, A. and Hess, W.R. (2009) Evidence for a major role of antisense RNAs in cyanobacterial gene regulation. Mol. Syst. Biol., 5, 305.
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 305
    • Georg, J.1    Voss, B.2    Scholz, I.3    Mitschke, J.4    Wilde, A.5    Hess, W.R.6
  • 61
    • 36448983583 scopus 로고    scopus 로고
    • A genome-wide survey of short coding sequences in streptococci
    • DOI 10.1099/mic.0.2007/006205-0
    • Ibrahim, M., Nicolas, P., Bessieres, P., Bolotin, A., Monnet, V. and Gardan, R. (2007) A genome-wide survey of short coding sequences in streptococci. Microbiology, 153, 3631-3644. (Pubitemid 350168241)
    • (2007) Microbiology , vol.153 , Issue.11 , pp. 3631-3644
    • Ibrahim, M.1    Nicolas, P.2    Bessieres, P.3    Bolotin, A.4    Monnet, V.5    Gardan, R.6
  • 62
    • 34247148876 scopus 로고    scopus 로고
    • RNA antitoxins
    • DOI 10.1016/j.mib.2007.03.003, PII S1369527407000203, Cell Regulation (RNA Special Issue)
    • Gerdes, K. and Wagner, E.G (2007) RNA antitoxins. Curr. Opin. Microbiol., 10, 117-124. (Pubitemid 46590043)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.2 , pp. 117-124
    • Gerdes, K.1    Wagner, E.G.H.2
  • 63
    • 4544272190 scopus 로고    scopus 로고
    • Enterococcal peptide sex pheromones: Synthesis and control of biological activity
    • DOI 10.1016/j.peptides.2003.10.020, PII S0196978104002906
    • Chandler, J.R. and Dunny, GM. (2004) Enterococcal peptide sex pheromones: synthesis and control of biological activity. Peptides, 25, 1377-1388. (Pubitemid 39221522)
    • (2004) Peptides , vol.25 , Issue.9 , pp. 1377-1388
    • Chandler, J.R.1    Dunny, G.M.2
  • 64
    • 33746320813 scopus 로고    scopus 로고
    • Induction of competence regulons as a general response to stress in gram-positive bacteria
    • DOI 10.1146/annurev.micro.60.080805.142139
    • Claverys, J.P., Prudhomme, M. and Martin, B. (2006) Induction of competence regulons as a general response to stress in gram-positive bacteria. Annu. Rev. Microbiol., 60, 451-475. (Pubitemid 44627957)
    • (2006) Annual Review of Microbiology , vol.60 , pp. 451-475
    • Claverys, J.-P.1    Prudhomme, M.2    Martin, B.3
  • 65
    • 58549096736 scopus 로고    scopus 로고
    • Quorum sensing in staphylococci
    • Novick, R.P. and Geisinger, E. (2008) Quorum sensing in staphylococci. Annu. Rev. Genet., 42, 541-64.
    • (2008) Annu. Rev. Genet. , vol.42 , pp. 541-64
    • Novick, R.P.1    Geisinger, E.2
  • 66
    • 73849118706 scopus 로고    scopus 로고
    • Global approaches for finding small RNA and small open reading frame functions
    • Wassarman, K.M. and Kiley, P.J. (2010) Global approaches for finding small RNA and small open reading frame functions. J. Bacteriol., 192, 26-28.
    • (2010) J. Bacteriol. , vol.192 , pp. 26-28
    • Wassarman, K.M.1    Kiley, P.J.2
  • 67
    • 33751536642 scopus 로고    scopus 로고
    • Genome-wide natural antisense transcription: Coupling its regulation to its different regulatory mechanisms
    • DOI 10.1038/sj.embor.7400857, PII 7400857
    • Lapidot, M. and Pilpel, Y. (2006) Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms. EMBO Rep., 7, 1216-1222. (Pubitemid 44835088)
    • (2006) EMBO Reports , vol.7 , Issue.12 , pp. 1216-1222
    • Lapidot, M.1    Pilpel, Y.2
  • 68
    • 78149421813 scopus 로고    scopus 로고
    • Bacterial antisense RNAs: How many are there, and what are they doing?
    • Thomason, M.K. and Storz, G (2010) Bacterial antisense RNAs: how many are there, and what are they doing? Annu. Rev. Genet., 44, 167-188.
    • (2010) Annu. Rev. Genet. , vol.44 , pp. 167-188
    • Thomason, M.K.1    Storz, G.2
  • 69
    • 77953697277 scopus 로고    scopus 로고
    • A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri
    • Giangrossi, M., Prosseda, G, Tran, C.N., Brandi, A., Colonna, B. and Falconi, M. (2010) A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri. Nucleic Acids Res., 38, 3362-3375.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 3362-3375
    • Giangrossi, M.1    Prosseda, G.2    Tran, C.N.3    Brandi, A.4    Colonna, B.5    Falconi, M.6
  • 70
    • 34247560793 scopus 로고    scopus 로고
    • Transcription termination within the iron transport-biosynthesis operon of Vibrio anguillarum requires an antisense RNA
    • DOI 10.1128/JB.00619-06
    • Stork, M., Di Lorenzo, M., Welch, T.J. and Crosa, J.H. (2007) Transcription termination within the iron transport-biosynthesis operon of Vibrio anguillarum requires an antisense RNA. J. Bacteriol., 189, 3479-3488. (Pubitemid 46668812)
    • (2007) Journal of Bacteriology , vol.189 , Issue.9 , pp. 3479-3488
    • Stork, M.1    Di Lorenzo, M.2    Welch, T.J.3    Crosa, J.H.4
  • 74
    • 0035159222 scopus 로고    scopus 로고
    • Extracellular superoxide production by Enterococcus faecalis requires demethylmenaquinone and is attenuated by functional terminal quinol oxidases
    • DOI 10.1046/j.1365-2958.2001.02638.x
    • Huycke, M.M., Moore, D., Joyce, W., Wise, P., Shepard, L., Kotake, Y. and Gilmore, M.S. (2001) Extracellular superoxide production by Enterococcus faecalis requires demethylmenaquinone and is attenuated by functional terminal quinol oxidases. Mol. Microbiol., 42, 729-740. (Pubitemid 33064482)
    • (2001) Molecular Microbiology , vol.42 , Issue.3 , pp. 729-740
    • Huycke, M.M.1    Moore, D.2    Joyce, W.3    Wise, P.4    Shepard, L.5    Kotake, Y.6    Gilmore, M.S.7
  • 76
    • 33847037554 scopus 로고    scopus 로고
    • Extracellular Superoxide Production by Enterococcus faecalis Promotes Chromosomal Instability in Mammalian Cells
    • DOI 10.1053/j.gastro.2006.11.040, PII S0016508506025212
    • Wang, X. and Huycke, M.M. (2007) Extracellular superoxide production by Enterococcus faecalis promotes chromosomal instability in mammalian cells. Gastroenterology, 132, 551-561. (Pubitemid 46274662)
    • (2007) Gastroenterology , vol.132 , Issue.2 , pp. 551-561
    • Wang, X.1    Huycke, M.M.2
  • 77
    • 0034978781 scopus 로고    scopus 로고
    • Signal transduction cascade for regulation of RpoS: Temperature regulation of DsrA
    • DOI 10.1128/JB.183.13.4012-4023.2001
    • Repoila, F. and Gottesman, S. (2001) Signal transduction cascade for regulation of RpoS: temperature regulation of DsrA. J. Bacteriol., 183, 4012-4023. (Pubitemid 32565482)
    • (2001) Journal of Bacteriology , vol.183 , Issue.13 , pp. 4012-4023
    • Repoila, F.1    Gottesman, S.2
  • 78
    • 34748842534 scopus 로고    scopus 로고
    • A Conserved Small RNA Promotes Discoordinate Expression of the glmUS Operon mRNA to Activate GlmS Synthesis
    • DOI 10.1016/j.jmb.2007.07.035, PII S002228360700962X
    • Urban, J.H., Papenfort, K., Thomsen, J., Schmitz, R.A. and Vogel, J. (2007) A conserved small RNA promotes discoordinate expression of the glmUS operon mRNA to activate GlmS synthesis. J. Mol. Biol., 373, 521-528. (Pubitemid 47488389)
    • (2007) Journal of Molecular Biology , vol.373 , Issue.3 , pp. 521-528
    • Urban, J.H.1    Papenfort, K.2    Thomsen, J.3    Schmitz, R.A.4    Vogel, J.5
  • 79
    • 34447328708 scopus 로고    scopus 로고
    • RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA
    • DOI 10.1111/j.1365-2958.2007.05796.x
    • Davis, B.M. and Waldor, M.K. (2007) RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA. Mol. Microbiol., 65, 373-385. (Pubitemid 47052725)
    • (2007) Molecular Microbiology , vol.65 , Issue.2 , pp. 373-385
    • Davis, B.M.1    Waldor, M.K.2
  • 80
    • 77955821310 scopus 로고    scopus 로고
    • Northern blot detection of endogenous small RNAs (~14nt) in bacterial total RNA extracts
    • Beckmann, B.M., GrunwellerA., Weber, M.H. and Hartmann, R.K. (2010) Northern blot detection of endogenous small RNAs (~14nt) in bacterial total RNA extracts. Nucleic Acids Res., 38, e147.
    • (2010) Nucleic Acids Res. , vol.38
    • Beckmann, B.M.1    Grunweller, A.2    Weber, M.H.3    Hartmann, R.K.4
  • 81
    • 77953809155 scopus 로고    scopus 로고
    • The multifaceted capacity of Dps proteins to combat bacterial stress conditions: Detoxification of iron and hydrogen peroxide and DNA binding
    • Chiancone, E. and Ceci, P. (2010) The multifaceted capacity of Dps proteins to combat bacterial stress conditions: Detoxification of iron and hydrogen peroxide and DNA binding. Biochim. Biophys. Acta, 1800, 798-805.
    • (2010) Biochim. Biophys. Acta , vol.1800 , pp. 798-805
    • Chiancone, E.1    Ceci, P.2
  • 82
    • 67649933665 scopus 로고    scopus 로고
    • Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes
    • Makarova, K.S., Wolf, Y.I. and Koonin, E.V. (2009) Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes. Biol. Direct, 4, 19.
    • (2009) Biol. Direct , vol.4 , pp. 19
    • Makarova, K.S.1    Wolf, Y.I.2    Koonin, E.V.3
  • 83
    • 77951619556 scopus 로고    scopus 로고
    • Abundance of type i toxin-antitoxin systems in bacteria: Searches for new candidates and discovery of novel families
    • Fozo, E.M., Makarova, K.S., Shabalina, SA., Yutin, N., Koonin, E.V. and Storz, G (2010) Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families. Nucleic Acids Res., 38, 3743-3759.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 3743-3759
    • Fozo, E.M.1    Makarova, K.S.2    Shabalina, S.A.3    Yutin, N.4    Koonin, E.V.5    Storz, G.6
  • 84
    • 74249084586 scopus 로고    scopus 로고
    • Comprehensive functional analysis of Mycobacterium tuberculosis toxin-antitoxin systems: Implications for pathogenesis, stress responses, and evolution
    • Ramage, H.R., Connolly, L.E. and Cox, J.S. (2009) Comprehensive functional analysis of Mycobacterium tuberculosis toxin-antitoxin systems: implications for pathogenesis, stress responses, and evolution. PLoS Genet., 5, e1000767.
    • (2009) PLoS Genet. , vol.5
    • Ramage, H.R.1    Connolly, L.E.2    Cox, J.S.3
  • 85
    • 63449102873 scopus 로고    scopus 로고
    • Bacterial toxin-antitoxin systems: More than selfish entities?
    • Van Melderen, L. and Saavedra De Bast, M. (2009) Bacterial toxin-antitoxin systems: more than selfish entities? PLoS Genet, 5, e1000437.
    • (2009) PLoS Genet , vol.5
    • Van Melderen, L.1    Saavedra De Bast, M.2
  • 86
    • 77955628762 scopus 로고    scopus 로고
    • Persister cells
    • Lewis, K. (2010) Persister Cells. Annu. Rev. Microbiol., 64, 357-372.
    • (2010) Annu. Rev. Microbiol. , vol.64 , pp. 357-372
    • Lewis, K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.