-
1
-
-
33749246561
-
Epigenetic gene regulation in the bacterial world
-
Casadesús J., Low D. Epigenetic gene regulation in the bacterial world. Microbiol Mol Biol Rev 2006, 70:830-856.
-
(2006)
Microbiol Mol Biol Rev
, vol.70
, pp. 830-856
-
-
Casadesús, J.1
Low, D.2
-
2
-
-
33846561583
-
A multistep epigenetic switch enables the stable inheritance of DNA methylation states
-
Lim H.N., Van Oudenaarden A. A multistep epigenetic switch enables the stable inheritance of DNA methylation states. Nat Genet 2007, 39:269-275.
-
(2007)
Nat Genet
, vol.39
, pp. 269-275
-
-
Lim, H.N.1
Van Oudenaarden, A.2
-
3
-
-
77954381780
-
Phase variation controls expression of Salmonella lipopolysaccharide modification genes by a DNA methylation-dependent mechanism
-
Broadbent S.E., Davies M.R., van der Woude M.W. Phase variation controls expression of Salmonella lipopolysaccharide modification genes by a DNA methylation-dependent mechanism. Mol Microbiol 2010, 77:337-353.
-
(2010)
Mol Microbiol
, vol.77
, pp. 337-353
-
-
Broadbent, S.E.1
Davies, M.R.2
van der Woude, M.W.3
-
4
-
-
77949663046
-
Establishing and maintaining sequestration of Dam target sites for phase variation of agn43 in Escherichia coli
-
Kaminska R., van der Woude M.W. Establishing and maintaining sequestration of Dam target sites for phase variation of agn43 in Escherichia coli. J Bacteriol 2010, 192:1937-1945.
-
(2010)
J Bacteriol
, vol.192
, pp. 1937-1945
-
-
Kaminska, R.1
van der Woude, M.W.2
-
6
-
-
51649106442
-
Identity determinants of infectious proteins
-
Chernoff Y.O. Identity determinants of infectious proteins. Proc Natl Acad Sci USA 2008, 105:13191-13192.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 13191-13192
-
-
Chernoff, Y.O.1
-
7
-
-
78049361927
-
Epigenetics in the extreme: prions and the inheritance of environmentally acquired traits
-
Halfmann R., Lindquist S. Epigenetics in the extreme: prions and the inheritance of environmentally acquired traits. Science 2010, 330:629-632.
-
(2010)
Science
, vol.330
, pp. 629-632
-
-
Halfmann, R.1
Lindquist, S.2
-
8
-
-
78049408567
-
A size threshold limits prion transmission and establishes phenotypic diversity
-
Derdowski A., Sindi S.S., Klaips C.L., DiSalvo S., Serio T.R. A size threshold limits prion transmission and establishes phenotypic diversity. Science 2010, 330:680-683.
-
(2010)
Science
, vol.330
, pp. 680-683
-
-
Derdowski, A.1
Sindi, S.S.2
Klaips, C.L.3
DiSalvo, S.4
Serio, T.R.5
-
9
-
-
77249122579
-
Prions, protein homeostasis, and phenotypic diversity
-
Halfmann R., Alberti S., Lindquist S. Prions, protein homeostasis, and phenotypic diversity. Trends Cell Biol 2010, 20:125-133.
-
(2010)
Trends Cell Biol
, vol.20
, pp. 125-133
-
-
Halfmann, R.1
Alberti, S.2
Lindquist, S.3
-
10
-
-
77953782617
-
Conversion of a yeast prion protein to an infectious form in bacteria
-
Garrity S.J., Sivanathan V., Dong J., Lindquist S., Hochschild A. Conversion of a yeast prion protein to an infectious form in bacteria. Proc Natl Acad Sci USA 2010, 107:10596-10601.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 10596-10601
-
-
Garrity, S.J.1
Sivanathan, V.2
Dong, J.3
Lindquist, S.4
Hochschild, A.5
-
11
-
-
73049167504
-
Teleonomic mechanisms in cellular metabolism, growth, and differentiation
-
Monod J., Jacob F. Teleonomic mechanisms in cellular metabolism, growth, and differentiation. Cold Spring Harb Symp Quant Biol 1961, 26:389-401.
-
(1961)
Cold Spring Harb Symp Quant Biol
, vol.26
, pp. 389-401
-
-
Monod, J.1
Jacob, F.2
-
12
-
-
0037734262
-
Hardware (DNA) circuits
-
D'Ari R., Thomas R. Hardware (DNA) circuits. C R Biol 2003, 326:215-217.
-
(2003)
C R Biol
, vol.326
, pp. 215-217
-
-
D'Ari, R.1
Thomas, R.2
-
14
-
-
0035983262
-
Memory in bacteria and phage
-
Casadesús J., D'Ari R. Memory in bacteria and phage. Bioessays 2002, 24:512-518.
-
(2002)
Bioessays
, vol.24
, pp. 512-518
-
-
Casadesús, J.1
D'Ari, R.2
-
15
-
-
76249115416
-
Building biological memory by linking positive feedback loops
-
Chang D.E., Leung S., Atkinson M.R., Reifler A., Forger D., Ninfa A.J. Building biological memory by linking positive feedback loops. Proc Natl Acad Sci USA 2010, 107:175-180.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 175-180
-
-
Chang, D.E.1
Leung, S.2
Atkinson, M.R.3
Reifler, A.4
Forger, D.5
Ninfa, A.J.6
-
16
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
Gardner T.S., Cantor C.R., Collins J.J. Construction of a genetic toggle switch in Escherichia coli. Nature 2000, 403:339-342.
-
(2000)
Nature
, vol.403
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
17
-
-
53849146767
-
Bistability, epigenetics, and bet-hedging in bacteria
-
Veening J.-W., Smits W.K., Kuipers O.P. Bistability, epigenetics, and bet-hedging in bacteria. Annu Rev Microbiol 2008, 62:193-210.
-
(2008)
Annu Rev Microbiol
, vol.62
, pp. 193-210
-
-
Veening, J.-W.1
Smits, W.K.2
Kuipers, O.P.3
-
18
-
-
1242274449
-
Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems
-
Angeli D., Ferrell J.E., Sontag E.D. Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems. Proc Natl Acad Sci USA 2004, 101:1822-1827.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1822-1827
-
-
Angeli, D.1
Ferrell, J.E.2
Sontag, E.D.3
-
19
-
-
0031029852
-
Stochastic mechanisms in gene expression
-
McAdams H.H., Arkin A. Stochastic mechanisms in gene expression. Proc Natl Acad Sci USA 1997, 94:814-819.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 814-819
-
-
McAdams, H.H.1
Arkin, A.2
-
21
-
-
0345359924
-
A positive-feedback-based bistable 'memory module' that governs a cell fate decision
-
Xiong W., Ferrell J.E. A positive-feedback-based bistable 'memory module' that governs a cell fate decision. Nature 2003, 426:460-465.
-
(2003)
Nature
, vol.426
, pp. 460-465
-
-
Xiong, W.1
Ferrell, J.E.2
-
22
-
-
37349100857
-
Bistability and biofilm formation in Bacillus subtilis
-
Chai Y., Chu F., Kolter R., Losick R. Bistability and biofilm formation in Bacillus subtilis. Mol Microbiol 2008, 67:254-263.
-
(2008)
Mol Microbiol
, vol.67
, pp. 254-263
-
-
Chai, Y.1
Chu, F.2
Kolter, R.3
Losick, R.4
-
23
-
-
77950951089
-
An epigenetic switch governing daughter cell separation in Bacillus subtilis
-
Chai Y., Norman T., Kolter R., Losick R. An epigenetic switch governing daughter cell separation in Bacillus subtilis. Genes Dev 2010, 24:754-765.
-
(2010)
Genes Dev
, vol.24
, pp. 754-765
-
-
Chai, Y.1
Norman, T.2
Kolter, R.3
Losick, R.4
-
24
-
-
29144501313
-
Cell population heterogeneity during growth of Bacillus subtilis
-
Kearns D.B., Losick R. Cell population heterogeneity during growth of Bacillus subtilis. Genes Dev. 2005, 19:3083-3094.
-
(2005)
Genes Dev.
, vol.19
, pp. 3083-3094
-
-
Kearns, D.B.1
Losick, R.2
-
25
-
-
74249117477
-
Epigenetic control of virulence gene expression in Pseudomonas aeruginosa by a LysR-type transcription regulator
-
Turner K.H., Vallet-Gely I., Dove S.L. Epigenetic control of virulence gene expression in Pseudomonas aeruginosa by a LysR-type transcription regulator. PLoS Genet 2009, 5:e1000779.
-
(2009)
PLoS Genet
, vol.5
-
-
Turner, K.H.1
Vallet-Gely, I.2
Dove, S.L.3
-
26
-
-
58549105920
-
Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas
-
Minoia M., Gaillard M., Reinhard F., Stojanov M., Sentchilo V., van der Meer J.R. Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas. Proc Natl Acad Sci USA 2008, 105:20792-20797.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 20792-20797
-
-
Minoia, M.1
Gaillard, M.2
Reinhard, F.3
Stojanov, M.4
Sentchilo, V.5
van der Meer, J.R.6
-
27
-
-
0036532226
-
Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability
-
Ferrell J.E. Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. Curr Opin Cell Biol 2002, 14:140-148.
-
(2002)
Curr Opin Cell Biol
, vol.14
, pp. 140-148
-
-
Ferrell, J.E.1
-
28
-
-
41949116255
-
Bet-hedging and epigenetic inheritance in bacterial cell development
-
Veening J.-W., Stewart E.J., Berngruber T.W., Taddei F., Kuipers O.P., Hamoen L.W. Bet-hedging and epigenetic inheritance in bacterial cell development. Proc Natl Acad Sci USA 2008, 105:4393-4398.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 4393-4398
-
-
Veening, J.-W.1
Stewart, E.J.2
Berngruber, T.W.3
Taddei, F.4
Kuipers, O.P.5
Hamoen, L.W.6
-
29
-
-
77956925998
-
Messy biology and the origins of evolutionary innovations
-
Tawfik D.S. Messy biology and the origins of evolutionary innovations. Nat Chem Biol 2010, 6:692-696.
-
(2010)
Nat Chem Biol
, vol.6
, pp. 692-696
-
-
Tawfik, D.S.1
-
30
-
-
33645027986
-
Stochastic protein expression in individual cells at the single molecule level
-
Cai L., Friedman N., Xie X.S. Stochastic protein expression in individual cells at the single molecule level. Nature 2006, 440:358-362.
-
(2006)
Nature
, vol.440
, pp. 358-362
-
-
Cai, L.1
Friedman, N.2
Xie, X.S.3
-
31
-
-
28944434119
-
Real-time kinetics of gene activity in individual bacteria
-
Golding I., Paulsson J., Zawilski S.M., Cox E.C. Real-time kinetics of gene activity in individual bacteria. Cell 2005, 123:1025-1036.
-
(2005)
Cell
, vol.123
, pp. 1025-1036
-
-
Golding, I.1
Paulsson, J.2
Zawilski, S.M.3
Cox, E.C.4
-
32
-
-
0037119587
-
Stochastic gene expression in a single cell
-
Elowitz M.B., Levine A.J., Siggia E.D., Swain P.S. Stochastic gene expression in a single cell. Science 2002, 297:1183-1186.
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
33
-
-
0036790975
-
Intrinsic and extrinsic contributions to stochasticity in gene expression
-
Swain P.S., Elowitz M.B., Siggia E.D. Intrinsic and extrinsic contributions to stochasticity in gene expression. Proc Natl Acad Sci USA 2002, 99:12795-12800.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12795-12800
-
-
Swain, P.S.1
Elowitz, M.B.2
Siggia, E.D.3
-
34
-
-
2942718723
-
Control of stochasticity in eukaryotic gene expression
-
Raser J.M., O'Shea E.K. Control of stochasticity in eukaryotic gene expression. Science 2004, 304:1811-1814.
-
(2004)
Science
, vol.304
, pp. 1811-1814
-
-
Raser, J.M.1
O'Shea, E.K.2
-
35
-
-
25444468618
-
Noise in gene expression: origins, consequences, and control
-
Raser J.M., O'Shea E.K. Noise in gene expression: origins, consequences, and control. Science 2005, 309:2010-2013.
-
(2005)
Science
, vol.309
, pp. 2010-2013
-
-
Raser, J.M.1
O'Shea, E.K.2
-
36
-
-
77954918654
-
Visualizing high error levels during gene expression in living bacterial cells
-
Meyerovich M., Mamou G., Ben-Yehuda S. Visualizing high error levels during gene expression in living bacterial cells. Proc Natl Acad Sci USA 2010, 107:11543-11548.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 11543-11548
-
-
Meyerovich, M.1
Mamou, G.2
Ben-Yehuda, S.3
-
37
-
-
77955102352
-
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Taniguchi Y., Choi P.J., Li G.-W., Chen H., Babu M., Hearn J., Emili A., Xie X.S. Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 2010, 329:533-538.
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.-W.3
Chen, H.4
Babu, M.5
Hearn, J.6
Emili, A.7
Xie, X.S.8
-
38
-
-
0034212551
-
Engineering stability in gene networks by autoregulation
-
Becskei A., Serrano L. Engineering stability in gene networks by autoregulation. Nature 2000, 405:590-593.
-
(2000)
Nature
, vol.405
, pp. 590-593
-
-
Becskei, A.1
Serrano, L.2
-
39
-
-
16344387146
-
Stochastic simulations of the origins and implications of long-tailed distributions in gene expression
-
Krishna S., Banerjee B., Ramakrishnan T.V., Shivashankar G.V. Stochastic simulations of the origins and implications of long-tailed distributions in gene expression. Proc Natl Acad Sci USA 2005, 102:4771-4776.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 4771-4776
-
-
Krishna, S.1
Banerjee, B.2
Ramakrishnan, T.V.3
Shivashankar, G.V.4
-
40
-
-
15544371346
-
Gene regulation at the single-cell level
-
Rosenfeld N., Young J.W., Alon U., Swain P.S., Elowitz M.B. Gene regulation at the single-cell level. Science 2005, 307:1962-1965.
-
(2005)
Science
, vol.307
, pp. 1962-1965
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
41
-
-
33748058888
-
Bistability in bacteria
-
Dubnau D., Losick R. Bistability in bacteria. Mol Microbiol 2006, 61:564-572.
-
(2006)
Mol Microbiol
, vol.61
, pp. 564-572
-
-
Dubnau, D.1
Losick, R.2
-
42
-
-
33744984357
-
Lambda's switch: lessons from a module swap
-
Ptashne M. Lambda's switch: lessons from a module swap. Curr Biol 2006, 16:R459-462.
-
(2006)
Curr Biol
, vol.16
-
-
Ptashne, M.1
-
43
-
-
34948874664
-
Cro's role in the CI Cro bistable switch is critical for lambda's transition from lysogeny to lytic development
-
Schubert R.A., Dodd I.B., Egan J.B., Shearwin K.E. Cro's role in the CI Cro bistable switch is critical for lambda's transition from lysogeny to lytic development. Genes Dev 2007, 21:2461-2472.
-
(2007)
Genes Dev
, vol.21
, pp. 2461-2472
-
-
Schubert, R.A.1
Dodd, I.B.2
Egan, J.B.3
Shearwin, K.E.4
-
44
-
-
77957235052
-
Reversal of an epigenetic switch governing cell chaining in Bacillus subtilis by protein instability
-
Chai Y., Kolter R., Losick R. Reversal of an epigenetic switch governing cell chaining in Bacillus subtilis by protein instability. Mol Microbiol 2010, 78:218-229.
-
(2010)
Mol Microbiol
, vol.78
, pp. 218-229
-
-
Chai, Y.1
Kolter, R.2
Losick, R.3
-
45
-
-
0001389945
-
Enzyme induction as an all-or-none phenomenon
-
Novick A., Weiner M. Enzyme induction as an all-or-none phenomenon. Proc Natl Acad Sci USA 1957, 553-566.
-
(1957)
Proc Natl Acad Sci USA
, pp. 553-566
-
-
Novick, A.1
Weiner, M.2
-
46
-
-
54249083606
-
A stochastic single-molecule event triggers phenotype switching of a bacterial cell
-
Choi P.J., Cai L., Frieda K., Xie X.S. A stochastic single-molecule event triggers phenotype switching of a bacterial cell. Science 2008, 322:442-446.
-
(2008)
Science
, vol.322
, pp. 442-446
-
-
Choi, P.J.1
Cai, L.2
Frieda, K.3
Xie, X.S.4
-
47
-
-
61349148091
-
Transcriptional infidelity promotes heritable phenotypic change in a bistable gene network
-
Gordon A.J.E., Halliday J.A., Blankschien M.D., Burns P.A., Yatagai F., Herman C. Transcriptional infidelity promotes heritable phenotypic change in a bistable gene network. PLoS Biol 2009, 7:e44.
-
(2009)
PLoS Biol
, vol.7
-
-
Gordon, A.J.E.1
Halliday, J.A.2
Blankschien, M.D.3
Burns, P.A.4
Yatagai, F.5
Herman, C.6
-
48
-
-
77951129749
-
Pre-dispositions and epigenetic inheritance in the Escherichia coli lactose operon bistable switch
-
Robert L., Paul G., Chen Y., Taddei F., Baigl D., Lindner A.B. Pre-dispositions and epigenetic inheritance in the Escherichia coli lactose operon bistable switch. Mol Syst Biol 2010, 6:357.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 357
-
-
Robert, L.1
Paul, G.2
Chen, Y.3
Taddei, F.4
Baigl, D.5
Lindner, A.B.6
-
49
-
-
64749116742
-
Using movies to analyse gene circuit dynamics in single cells
-
Locke J.C., Elowitz M.B. Using movies to analyse gene circuit dynamics in single cells. Nat Rev Microbiol 2009, 7:383-392.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 383-392
-
-
Locke, J.C.1
Elowitz, M.B.2
|