Classification of viral zoonosis through receptor pattern analysis

BMC Bioinformatics

Volumn 12, Issue , 2011, Pages

  Bae, Se Eun ^a   Son, Hyeon S ^a  

^a Seoul National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; COMPUTATIONAL ANALYSIS; ENVIRONMENTAL FACTORS; HIGH MUTATION RATE; RECEPTOR PROTEINS; VIRAL ENVELOPE PROTEINS; VIRUS TRANSMISSION; ZOONOTIC POTENTIAL;

AMINO ACIDS; CELL MEMBRANES; DISCRIMINANT ANALYSIS; FORECASTING; PROTEINS; RNA;

VIRUSES;

DSRNA VIRUSES; RNA VIRUSES; VERTEBRATA;

VIRUS RECEPTOR;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; BIOLOGY; CHEMICAL PHENOMENA; CLASSIFICATION; DISEASE TRANSMISSION; HUMAN; METHODOLOGY; VIRUS; VIRUS INFECTION; ZOONOSIS;

AMINO ACID SEQUENCE; ANIMALS; COMPUTATIONAL BIOLOGY; HUMANS; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; RECEPTORS, VIRUS; VIRUS DISEASES; VIRUSES; ZOONOSES;

EID: 79953904064     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-96     Document Type: Article

References (34)

1. Baranowski E, Ruiz-Jarabo CM, Domingo E. Evolution of Cell Recognition by Viruses. Science 2001, 292:1102-1105. 10.1126/science.1058613, 11352064.
2. Schwabe CW. Veterinay medicine and human health 1984, Baltimore, Williams & Wilkins.
3. Webber R. Communicable disease epidemiology and control. Am J Epidemiol 1998, 147:791-792.
4. Hugh-Jones ME, Hubbert WT, Hagstad HV. Zoonoses-recognition, control and prevention. 2008, Iowa: Iowa State University Press.
5. Schneider-Schaulies J. Cellular receptors for viruses: links to tropism and pathogenesis. J Gen Virol 2000, 81:1413-1429.
6. Dimmock NJ. Initial Stages in infection with Animal viruses. J Gen Virol 1982, 59:1-22. 10.1099/0022-1317-59-1-1, 6279769.
7. Wiley DC, Wilson IA, Skehel JJ. Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation. Nature 1981, 289:373-378. 10.1038/289373a0, 6162101.
8. Duffy S, Shackelton LA, Holmes EC. Rates of evolutionary change in viruses: patterns and determinats. Nat Rev Genet 2008, 1-10.
9. Horsfall FL, Hardy PH, Davenport FM. The significance of combinations between viruses and host cells. Bull N Y Acad 1948, 24:470-475.
10. Dales S. Early Events in Cell-Animal Virus Interactions. Bacteriol Rev 1973, 37:103-135. 413808, 4200163.
11. Lentz TL. The recognition event between virus and host cell receptor: a target for antiviral agents. J Gen Virol 1990, 71:751-766. 10.1099/0022-1317-71-4-751, 2109039.
12. Vrublevskaya VV, Korney AN, Smirnow SV, Morenkov OS. Cell-binding properties of glycoprotein B of Aujeszky's disease virus. Virus Res 2002, 86:7-19. 10.1016/S0168-1702(02)00032-1, 12076825.
13. Myszka DG, Sweet RW, Hensley P, Brigham-Burke M, Kwong PD, Hendrickson WA, Wyatt R, Sodroski J, Doyle ML. Energetics of the HIV gp120-CD4 binding reaction. PNAS 2000, 97:9026-9031. 10.1073/pnas.97.16.9026, 16815, 10922058.
14. Wu L, Gerard NP, Wyatt R, Choe H, Parolin C, Ruffing N, Borsetti A, Cardoso AA, Desjardin E, Newman W, Gerard C, Sodroski J. CD4-induced interaction of primary HIV-1 gp120 glycoproteins with the chemokine receptor CCR-5. Nature 1996, 384:179-183. 10.1038/384179a0, 8906795.
15. Hyypiä T. Virus Host Cell Receptors. Encyclopedia of life science 2006, 1-8.
16. Wang JH. Protein recognition by cell surface receptors: physiological receptors versus virus interactions. Trends Biochem Sci 2002, 27:122-126. 10.1016/S0968-0004(01)02038-2, 11893508.
17. Wimmer E. Cellular receptors for animal viruses. 1994, Cold Spring Harbor laboratory Press, Cold Spring Harbor, NY.
18. Haywood AM. Virus Receptors: Binding, Adhesion Strengthening, and Changes in Viral Structure. J Virol 1994, 68:1-5. 236257, 8254718.
19. Reeves JD, Gallo SA, Ahmad N, Miamidian JL, Harvey PE, Sharron M, Pohlmann S, Sfakianos JN, Derdeyn CA, Blumenthal R, Hunter E, Doms RW. Sensitivity of HIV-1 to entry inhibitors correlates with envelope/coreceptor affinity, receoptor density, and fusion kinetics. Proc Natil Acad Sci 2002, 99:16249-16254.
20. Pileri P, Uematsu Y, Campagnoli S, Galli G, Falugi F, Petracca R, Weiner AJ, Houghton M, Rosa D, Grandi G, Abrignani S. Binding of Hepatitis C Virus to CD81. Science 1998, 282:938-941. 10.1126/science.282.5390.938, 9794763.
21. Gareth MJ, Andrew R, Pybus OG, Holmes EC. Rates of Molecular Evolution in RNA Viruses: A Quantitative Phylogenetic Analysis. J Mol Evol 2002, 54:156-165. 10.1007/s00239-001-0064-3, 11821909.
22. Faure E. Could FIV zoonosis responsible of the breakdown of the pathocenosis which has reduced the European CCR5-Delta32 allele frequencies?. Virol J 2008, 5:119. 10.1186/1743-422X-5-119, 2575341, 18925940.
23. VandeWoude S, Apeterei C. Going Wild: Lessons from Naturally Occurring T-Lymphotropic Lentiviruses. Clin Microbiol Rev 2006, 19:728-762. 10.1128/CMR.00009-06, 1592692, 17041142.
24. Berger EA, Murphy PM, Farber JM. Chemokine receptors as HIV-1 coreceptors; roles in viral entry, tropism, and disease. Annu, Rev Immunol 1999, 17:657-700.
25. Fauguet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA. 8th Reports of the international committee on Taxonomy of viruses. Academic Press.
26. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 1997, 25:4876-4882. 10.1093/nar/25.24.4876, 147148, 9396791.
27. Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD. Multiple sequence alignment with the Clustal series of programs. Nucleic acids res 2003, 31:3497-3500. 10.1093/nar/gkg500, 168907, 12824352.
28. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-402. 10.1093/nar/25.17.3389, 146917, 9254694.
29. Löytynoja A, Goldman N. An algorithm for progressive multiple alignment of sequences with insertions. PNAS 2005, 102:10557-10562. 1180752, 16000407.
30. Greger M. The Human/Animal Interface: emergence and resurgence of zoonotic infectious diseases. Crit Rev Microbiology 2007, 33:243-299.
31. Ryou WS. Virology 2007, Life Science publishing.
32. Woolhouse MEJ, Gowtage-Sequeria S. Host Range and Emerging and Reemerging Pathogens. Emerg Infect Dis 2005, 11:1842-1847.
33. Baltimore D. Expression of Animal Virus Genomes. Bacteriol Rev 1971, 35:235-241. 378387, 4329869.
34. Fisher RA. The use of multiple measurement in taxonomic problems. Ann Eugenics 2 1936, 179-188.