메뉴 건너뛰기




Volumn 128, Issue 4, 2011, Pages 485-489

Development of novel chloroplast microsatellite markers for Dendrobium officinale, and cross-amplification in other Dendrobium species (Orchidaceae)

Author keywords

Chloroplast microsatellites; Dendrobium officinale; Development; Polymorphism; Transferability

Indexed keywords

ALLELE; CHLOROPLAST; CONSERVATION GENETICS; ENDANGERED SPECIES; GENETIC MARKER; GENETIC STRUCTURE; MONOCOTYLEDON; POLYMORPHISM;

EID: 79953324156     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2011.02.016     Document Type: Article
Times cited : (15)

References (27)
  • 1
    • 0032845531 scopus 로고    scopus 로고
    • Polymorphic simple sequence repeat markers in chloroplast genomes of Solanaceous plants
    • Bryan G.J., McNicoll J., Ramsay G., Meyer R.C., De Jong W.S. Polymorphic simple sequence repeat markers in chloroplast genomes of Solanaceous plants. Theor. Appl. Genet. 1999, 99:859-867.
    • (1999) Theor. Appl. Genet. , vol.99 , pp. 859-867
    • Bryan, G.J.1    McNicoll, J.2    Ramsay, G.3    Meyer, R.C.4    De Jong, W.S.5
  • 3
    • 0041874895 scopus 로고    scopus 로고
    • The development and evaluation of consensus chloroplast primer pairs that possess highly variable sequence regions in a diverse array of plant taxa
    • Chung S., Staub J.E. The development and evaluation of consensus chloroplast primer pairs that possess highly variable sequence regions in a diverse array of plant taxa. Theor. Appl. Genet. 2003, 107:757-767.
    • (2003) Theor. Appl. Genet. , vol.107 , pp. 757-767
    • Chung, S.1    Staub, J.E.2
  • 4
    • 0029033095 scopus 로고
    • Paternal inheritance of plastids in interspecific hybrids of the genus Actinidia revealed by PCR-amplification of chloroplast DNA fragments
    • Cipriani C., Testolin R., Morgante M. Paternal inheritance of plastids in interspecific hybrids of the genus Actinidia revealed by PCR-amplification of chloroplast DNA fragments. Mol. Gen. Genet. 1995, 247:693-697.
    • (1995) Mol. Gen. Genet. , vol.247 , pp. 693-697
    • Cipriani, C.1    Testolin, R.2    Morgante, M.3
  • 5
    • 34250778457 scopus 로고    scopus 로고
    • Searching for the relatives of coffea (Rubiaceae Ixoroideae): the circumscription and phylogeny of coffeeae based on plastid sequence data and morphology
    • Davis A.P., Chestier M., Maurin O., Fay M.F. Searching for the relatives of coffea (Rubiaceae Ixoroideae): the circumscription and phylogeny of coffeeae based on plastid sequence data and morphology. Am. J. Bot. 2007, 94:313-329.
    • (2007) Am. J. Bot. , vol.94 , pp. 313-329
    • Davis, A.P.1    Chestier, M.2    Maurin, O.3    Fay, M.F.4
  • 6
    • 14844318117 scopus 로고    scopus 로고
    • Use of chloroplast microsatellites to differentiate oak populations
    • Deguilloux M.F., Pemonge M.H., Petit R.J. Use of chloroplast microsatellites to differentiate oak populations. Ann. For. Sci. 2004, 61:825-830.
    • (2004) Ann. For. Sci. , vol.61 , pp. 825-830
    • Deguilloux, M.F.1    Pemonge, M.H.2    Petit, R.J.3
  • 7
    • 0029240502 scopus 로고
    • A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants
    • Demesure B., Sodzi N., Petie R.J. A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Mol. Ecol. 1995, 4:129-131.
    • (1995) Mol. Ecol. , vol.4 , pp. 129-131
    • Demesure, B.1    Sodzi, N.2    Petie, R.J.3
  • 8
    • 57049184061 scopus 로고    scopus 로고
    • Genetic variation and conservation of the endangered Chinese endemic herb Dendrobium officinale based on SRAP analysis
    • Ding G., Zhang D.Z., Ding X.Y., Zhou Q., Zhang W.C., Li X.X. Genetic variation and conservation of the endangered Chinese endemic herb Dendrobium officinale based on SRAP analysis. Plant Syst. Evol. 2008, 276:149-156.
    • (2008) Plant Syst. Evol. , vol.276 , pp. 149-156
    • Ding, G.1    Zhang, D.Z.2    Ding, X.Y.3    Zhou, Q.4    Zhang, W.C.5    Li, X.X.6
  • 9
    • 85007110786 scopus 로고    scopus 로고
    • ARLEQUIN version 3.0: an integrated software package for population genetics data analysis
    • Excoffier L., Laval L.G., Schneider S. ARLEQUIN version 3.0: an integrated software package for population genetics data analysis. Evol. Bioinform. Online 2005, 1:47-50.
    • (2005) Evol. Bioinform. Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, L.G.2    Schneider, S.3
  • 10
    • 35848968232 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellite markers in Dendrobium officinale, an endangered herb endemic to China
    • Gu S., Ding X.Y., Wang Y., Zhou Q., Ding G., Li X.X., Qian L. Isolation and characterization of microsatellite markers in Dendrobium officinale, an endangered herb endemic to China. Mol. Ecol. Notes 2007, 7:1166-1168.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 1166-1168
    • Gu, S.1    Ding, X.Y.2    Wang, Y.3    Zhou, Q.4    Ding, G.5    Li, X.X.6    Qian, L.7
  • 11
    • 70450273162 scopus 로고    scopus 로고
    • Development of novel chloroplast microsatellite markers for Cucumis from sequence database
    • Hu J.B., Zhou X.Y., Li J.W. Development of novel chloroplast microsatellite markers for Cucumis from sequence database. Biol. Plant. 2009, 53:793-796.
    • (2009) Biol. Plant. , vol.53 , pp. 793-796
    • Hu, J.B.1    Zhou, X.Y.2    Li, J.W.3
  • 12
    • 0033921668 scopus 로고    scopus 로고
    • Microsatellites and microsynteny in the chloroplast genomes of Oryza and eight other Gramineae species
    • Ishii T., McCouch S.R. Microsatellites and microsynteny in the chloroplast genomes of Oryza and eight other Gramineae species. Theor. Appl. Genet. 2000, 100:1257-1266.
    • (2000) Theor. Appl. Genet. , vol.100 , pp. 1257-1266
    • Ishii, T.1    McCouch, S.R.2
  • 13
    • 33845912434 scopus 로고    scopus 로고
    • Evolution of chloroplast mononucleotide microsatellites in Arabidopsis thaliana
    • Jakobsson M., Säll T., Lind-Halldeón C., Halldeón C. Evolution of chloroplast mononucleotide microsatellites in Arabidopsis thaliana. Theor. Appl. Genet. 2007, 114:223-235.
    • (2007) Theor. Appl. Genet. , vol.114 , pp. 223-235
    • Jakobsson, M.1    Säll, T.2    Lind-Halldeón, C.3    Halldeón, C.4
  • 14
    • 59549092854 scopus 로고    scopus 로고
    • Taxonomic revision of Dendrobium moniliforme complex (Orchidaceae)
    • Jin X.H., Chen S.H., Luo Y.B. Taxonomic revision of Dendrobium moniliforme complex (Orchidaceae). Sci. Hortic. 2009, 120:143-145.
    • (2009) Sci. Hortic. , vol.120 , pp. 143-145
    • Jin, X.H.1    Chen, S.H.2    Luo, Y.B.3
  • 15
    • 43349090279 scopus 로고    scopus 로고
    • Genetic diversity analysis and conservation of the endangered Chinese endemic herb Dendrobium officinale Kimura et Migo (Orchidaceae) based on AFLP
    • Li X.X., Ding X.Y., Chu B.H., Zhou Q., Ding G., Gu S. Genetic diversity analysis and conservation of the endangered Chinese endemic herb Dendrobium officinale Kimura et Migo (Orchidaceae) based on AFLP. Genetica. 2008, 133:159-166.
    • (2008) Genetica. , vol.133 , pp. 159-166
    • Li, X.X.1    Ding, X.Y.2    Chu, B.H.3    Zhou, Q.4    Ding, G.5    Gu, S.6
  • 17
    • 0037348714 scopus 로고    scopus 로고
    • Genetic structure and reproduction dynamics of Salix reinii during primary succession on Mount Fuji, as revealed by nuclear and chloroplast microsatellite analysis
    • Lian C.L., Oishi R., Miyashita N., Nara K., Nakaya H., Wu B., Zhou Z., Hogetsu T. Genetic structure and reproduction dynamics of Salix reinii during primary succession on Mount Fuji, as revealed by nuclear and chloroplast microsatellite analysis. Mol. Ecol. 2003, 12:609-618.
    • (2003) Mol. Ecol. , vol.12 , pp. 609-618
    • Lian, C.L.1    Oishi, R.2    Miyashita, N.3    Nara, K.4    Nakaya, H.5    Wu, B.6    Zhou, Z.7    Hogetsu, T.8
  • 18
    • 0018147653 scopus 로고
    • Estimation of average heterozygosity and genetic distance from a small number of individuals
    • Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 1978, 89:583-590.
    • (1978) Genetics , vol.89 , pp. 583-590
    • Nei, M.1
  • 19
    • 77952158104 scopus 로고    scopus 로고
    • Current advances of DNA barcoding study in plants
    • Ning S.P., Yan H.F., Hao G., Ge X.J. Current advances of DNA barcoding study in plants. Biodivers. Sci. 2008, 16:417-425.
    • (2008) Biodivers. Sci. , vol.16 , pp. 417-425
    • Ning, S.P.1    Yan, H.F.2    Hao, G.3    Ge, X.J.4
  • 20
    • 0029101585 scopus 로고
    • Polymorphic simple-sequence repeat regions in chloroplast genomes: applications to the population genetics of pines
    • Powell W., Morgante M., McDevitt R., Vendramin G., Rafalski J. Polymorphic simple-sequence repeat regions in chloroplast genomes: applications to the population genetics of pines. Proc. Natl. Acad. Sci. U.S.A. 1995, 92:7759-7763.
    • (1995) Proc. Natl. Acad. Sci. U.S.A. , vol.92 , pp. 7759-7763
    • Powell, W.1    Morgante, M.2    McDevitt, R.3    Vendramin, G.4    Rafalski, J.5
  • 21
    • 34250767339 scopus 로고    scopus 로고
    • Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III
    • Shaw J., Lickey E.B., Schilling E.E., Small R.L. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am. J. Bot. 2007, 94:275-288.
    • (2007) Am. J. Bot. , vol.94 , pp. 275-288
    • Shaw, J.1    Lickey, E.B.2    Schilling, E.E.3    Small, R.L.4
  • 22
    • 0026261665 scopus 로고
    • Universal primers for amplification of three non-coding regions of chloroplast DNA
    • Taberlet P., Gielly L., Pautou G., Bouvet J. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant. Mol. Biol. 1991, 17:1105-1109.
    • (1991) Plant. Mol. Biol. , vol.17 , pp. 1105-1109
    • Taberlet, P.1    Gielly, L.2    Pautou, G.3    Bouvet, J.4
  • 23
    • 0027968068 scopus 로고
    • CLUSTALW: improving the sensitivity of progressive multiple alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTALW: improving the sensitivity of progressive multiple alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acid Res. 1994, 22:4673-4680.
    • (1994) Nucl. Acid Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 24
    • 0031415343 scopus 로고    scopus 로고
    • Characterization and inheritance of polymorphic plastid microsatellites in Abies
    • Vendramin G.G., Ziegenhagen B. Characterization and inheritance of polymorphic plastid microsatellites in Abies. Genome 1997, 40:857-864.
    • (1997) Genome , vol.40 , pp. 857-864
    • Vendramin, G.G.1    Ziegenhagen, B.2
  • 25
    • 0030208885 scopus 로고    scopus 로고
    • A set of primers for the amplification of 20 chloroplast microsatellites in Pinaceae
    • Vendramin G.G., Lelli L., Rossi P., Morgante M. A set of primers for the amplification of 20 chloroplast microsatellites in Pinaceae. Mol. Ecol. 1996, 5:595-598.
    • (1996) Mol. Ecol. , vol.5 , pp. 595-598
    • Vendramin, G.G.1    Lelli, L.2    Rossi, P.3    Morgante, M.4
  • 26
    • 44649087308 scopus 로고    scopus 로고
    • A.R.G. Gantner Verlag, Ruggell
    • Wood H.P. The Dendrobiums 2006, A.R.G. Gantner Verlag, Ruggell.
    • (2006) The Dendrobiums
    • Wood, H.P.1
  • 27
    • 77954590703 scopus 로고    scopus 로고
    • Development of microsatellites of Dendrobium officinale and its application in purity identification of germplasm
    • Xie M.L., Hou B.W., Han L., Ma Y.H., Ding X.Y. Development of microsatellites of Dendrobium officinale and its application in purity identification of germplasm. Acta Pharm. Sin. 2010, 45:667-672.
    • (2010) Acta Pharm. Sin. , vol.45 , pp. 667-672
    • Xie, M.L.1    Hou, B.W.2    Han, L.3    Ma, Y.H.4    Ding, X.Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.