메뉴 건너뛰기




Volumn 107, Issue 4, 2003, Pages 757-767

The development and evaluation of consensus chloroplast primer pairs that possess highly variable sequence regions in a diverse array of plant taxa

Author keywords

Chloroplast; Consensus primer; Genetic relationships; Simple sequence repeats; Variable region

Indexed keywords

ALGORITHMS; DNA; GENES; MOLECULES;

EID: 0041874895     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-003-1311-3     Document Type: Article
Times cited : (133)

References (38)
  • 2
    • 0032845531 scopus 로고    scopus 로고
    • Polymorphic simple sequence repeat markers in chloroplast genomes of Solanaceous plants
    • Bryan GJ, McNicoll J, Ramsay G, Meyer RC, De JWS (1999) Polymorphic simple sequence repeat markers in chloroplast genomes of Solanaceous plants. Theor Appl Genet 99:859-867
    • (1999) Theor Appl Genet , vol.99 , pp. 859-867
    • Bryan, G.J.1    McNicoll, J.2    Ramsay, G.3    Meyer, R.C.4    De, J.W.S.5
  • 3
    • 0038207954 scopus 로고    scopus 로고
    • Inheritance of chilling injury: A maternally inherited trait in cucumber
    • in press
    • Chung S, Staub JE, Fazio G (2003) Inheritance of chilling injury: a maternally inherited trait in cucumber. J Am Soc Hort Sci (in press)
    • (2003) J Am Soc Hort Sci
    • Chung, S.1    Staub, J.E.2    Fazio, G.3
  • 4
    • 0029240502 scopus 로고
    • A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants
    • Demesure B, Sodzi N, Petit RJ (1995) A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Mol Ecol 4:129-131
    • (1995) Mol Ecol , vol.4 , pp. 129-131
    • Demesure, B.1    Sodzi, N.2    Petit, R.J.3
  • 5
    • 0030484809 scopus 로고    scopus 로고
    • Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L.) in Europe
    • Demesure B, Comps B, Petit RJ (1996) Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L.) in Europe. Evolution 50:2515-2520
    • (1996) Evolution , vol.50 , pp. 2515-2520
    • Demesure, B.1    Comps, B.2    Petit, R.J.3
  • 6
    • 0031127308 scopus 로고    scopus 로고
    • An enlarged set of consensus primers for the study of organelle DNA in plants
    • Dumolin LS, Pemonge MH, Petit RJ (1997) An enlarged set of consensus primers for the study of organelle DNA in plants. Mol Ecol 6:393-397
    • (1997) Mol Ecol , vol.6 , pp. 393-397
    • Dumolin, L.S.1    Pemonge, M.H.2    Petit, R.J.3
  • 7
    • 0013656085 scopus 로고
    • The amino acids of seeds of the Cucurbitaceae
    • Dunnill PM, Fowden L (1965) The amino acids of seeds of the Cucurbitaceae. Phytochemistry 4:933-944
    • (1965) Phytochemistry , vol.4 , pp. 933-944
    • Dunnill, P.M.1    Fowden, L.2
  • 9
    • 0033804270 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the Oenothera elata plastid chromosome, representing plastome I of the five distinguishable Euoenothera plastomes
    • Hupfer H, Swiatek M, Hornung S, Herrmann RG, Maier RM, Chiu WL, Sears B (2000) Complete nucleotide sequence of the Oenothera elata plastid chromosome, representing plastome I of the five distinguishable Euoenothera plastomes. Mol Gen Genet 263:581-585
    • (2000) Mol Gen Genet , vol.263 , pp. 581-585
    • Hupfer, H.1    Swiatek, M.2    Hornung, S.3    Herrmann, R.G.4    Maier, R.M.5    Chiu, W.L.6    Sears, B.7
  • 10
    • 0000789632 scopus 로고    scopus 로고
    • Genome walking with consensus primers: Application to the large single-copy region of chloroplast DNA
    • Grivet D, Heinze B, Vendramin GG, Petit RJ (2001) Genome walking with consensus primers: application to the large single-copy region of chloroplast DNA. Mol Ecol Notes 1:345-349
    • (2001) Mol Ecol Notes , vol.1 , pp. 345-349
    • Grivet, D.1    Heinze, B.2    Vendramin, G.G.3    Petit, R.J.4
  • 11
    • 0033921668 scopus 로고    scopus 로고
    • Microsatellites and microsynteny in the chloroplast genomes of Oryza and eight other Gramineae species
    • Ishii T, McCouch SR (2000) Microsatellites and microsynteny in the chloroplast genomes of Oryza and eight other Gramineae species. Theor Appl Genet 100:1257-1266
    • (2000) Theor Appl Genet , vol.100 , pp. 1257-1266
    • Ishii, T.1    McCouch, S.R.2
  • 12
    • 0000413867 scopus 로고
    • Notes on Cucurbitaceae, including a proposed new classification of the family
    • Jeffrey C (1962) Notes on Cucurbitaceae, including a proposed new classification of the family. Kew Bull 15:337-371
    • (1962) Kew Bull , vol.15 , pp. 337-371
    • Jeffrey, C.1
  • 13
    • 0000491419 scopus 로고
    • A note on pollen morphology in the Cucurbitaceae
    • Jeffrey C (1964) A note on pollen morphology in the Cucurbitaceae. Kew Bull 17:473-476
    • (1964) Kew Bull , vol.17 , pp. 473-476
    • Jeffrey, C.1
  • 14
    • 84990442853 scopus 로고
    • A review of the Cucurbitaceae
    • Jeffrey C (1980) A review of the Cucurbitaceae. Bot J Linn Soc 81:233-247
    • (1980) Bot J Linn Soc , vol.81 , pp. 233-247
    • Jeffrey, C.1
  • 15
    • 0003307380 scopus 로고
    • An outline classification of the Cucurbitaceae
    • Cornell University Press, Ithaca, NY
    • Jeffrey C (1990) An outline classification of the Cucurbitaceae. In: Biology and utilization of the Cucurbitaceae. Cornell University Press, Ithaca, NY, pp 449-463
    • (1990) Biology and Utilization of the Cucurbitaceae , pp. 449-463
    • Jeffrey, C.1
  • 16
    • 0032042486 scopus 로고    scopus 로고
    • Molecular evolution of the internal transcribed spacers (ITS1 and ITS2) and phylogenetic relationships among species of the family Cucurbitaceae
    • Jobst J, King K, Hemleben V (1998) Molecular evolution of the internal transcribed spacers (ITS1 and ITS2) and phylogenetic relationships among species of the family Cucurbitaceae. Mol Phylog Evol 9:204-219
    • (1998) Mol Phylog Evol , vol.9 , pp. 204-219
    • Jobst, J.1    King, K.2    Hemleben, V.3
  • 17
    • 0031724687 scopus 로고    scopus 로고
    • Chloroplast DNA phylogeography of Alnus glutinosa L. Gaertn
    • King RA, Ferris C (1998) Chloroplast DNA phylogeography of Alnus glutinosa L. Gaertn. Mol Ecol 7:1151-1161
    • (1998) Mol Ecol , vol.7 , pp. 1151-1161
    • King, R.A.1    Ferris, C.2
  • 18
    • 0029104627 scopus 로고
    • The use of chloroplast DNA polymorphism in studies of gene flow in plants
    • McCauley DE (1995) The use of chloroplast DNA polymorphism in studies of gene flow in plants. Trends Ecol Evol 10:198-202
    • (1995) Trends Ecol Evol , vol.10 , pp. 198-202
    • McCauley, D.E.1
  • 19
    • 0033920036 scopus 로고    scopus 로고
    • Chloroplast DNA diversity within and among populations of the allotetraploid Prunus spinosa L.
    • Mohanty A, Martin JP, Aguinagalde I (2000) Chloroplast DNA diversity within and among populations of the allotetraploid Prunus spinosa L. Theor Appl Genet 100:1304-1310
    • (2000) Theor Appl Genet , vol.100 , pp. 1304-1310
    • Mohanty, A.1    Martin, J.P.2    Aguinagalde, I.3
  • 21
    • 0030886378 scopus 로고    scopus 로고
    • Phylogenetic assessment of length variation at a microsatellite locus
    • Orti G, Pearse DE, Avise JC (1997) Phylogenetic assessment of length variation at a microsatellite locus. Proc Natl Acad Sci USA 94:10,745-10,749
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 10745-10749
    • Orti, G.1    Pearse, D.E.2    Avise, J.C.3
  • 22
    • 0029101585 scopus 로고
    • Polymorphic simple-sequence repeat regions in chloroplast genomes: Applications to the population genetics of pines
    • Powell W, Morgante M, McDevitt R, Vendramin G, Rafalski J (1995) Polymorphic simple-sequence repeat regions in chloroplast genomes: applications to the population genetics of pines. Proc Natl Acad Sci USA 92:7759-7763
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 7759-7763
    • Powell, W.1    Morgante, M.2    McDevitt, R.3    Vendramin, G.4    Rafalski, J.5
  • 23
    • 0029792620 scopus 로고    scopus 로고
    • Genepool variation in the genus Glycine subgenus Soja revealed by polymorphic nuclear and chloroplast microsatellites
    • Powell W, Morgante M, Doyle JJ, McNicol JW, Tingey SV, Rafalski AJ (1996) Genepool variation in the genus Glycine subgenus Soja revealed by polymorphic nuclear and chloroplast microsatellites. Genetics 144:792-803
    • (1996) Genetics , vol.144 , pp. 792-803
    • Powell, W.1    Morgante, M.2    Doyle, J.J.3    McNicol, J.W.4    Tingey, S.V.5    Rafalski, A.J.6
  • 24
    • 0029843474 scopus 로고    scopus 로고
    • DNA fingerprints of rice (Oryza sativa) obtained from hypervariable chloroplast simple-sequence repeats
    • Provan J, Corbett G, Waugh R, McNicol JW, Morgante M, Powell W (1996) DNA fingerprints of rice (Oryza sativa) obtained from hypervariable chloroplast simple-sequence repeats. Proc Roy Soc Lond B 263:1275-1281
    • (1996) Proc Roy Soc Lond B , vol.263 , pp. 1275-1281
    • Provan, J.1    Corbett, G.2    Waugh, R.3    McNicol, J.W.4    Morgante, M.5    Powell, W.6
  • 25
    • 0032907656 scopus 로고    scopus 로고
    • Polymorphic chloroplast simple-sequence repeat primers for systematic and population studies in the genus Hordeum
    • Provan J, Russell JR, Booth A, Powell W (1999) Polymorphic chloroplast simple-sequence repeat primers for systematic and population studies in the genus Hordeum. Mol Ecol 8:505-511
    • (1999) Mol Ecol , vol.8 , pp. 505-511
    • Provan, J.1    Russell, J.R.2    Booth, A.3    Powell, W.4
  • 26
    • 0037039450 scopus 로고    scopus 로고
    • Phylogenetic relationships among domesticated and wild species of Cucurbita (Cucurbitaceae) inferred from a mitochondrial gene: Implications for crop plant evolution and areas of origin
    • Sanjur OI, Piperno DR, Andres TC, Wessel-Beaver L (2002) Phylogenetic relationships among domesticated and wild species of Cucurbita (Cucurbitaceae) inferred from a mitochondrial gene: implications for crop plant evolution and areas of origin. Proc Natl Acad Sci USA 99:535-540
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 535-540
    • Sanjur, O.I.1    Piperno, D.R.2    Andres, T.C.3    Wessel-Beaver, L.4
  • 27
    • 0033615372 scopus 로고    scopus 로고
    • Complete structure of the chloroplast genome of Arabidopsis thaliana
    • Sato S, Nakmura Y, Kaneko T, Asamizu E, Tabata S (1999) Complete structure of the chloroplast genome of Arabidopsis thaliana. DNA Res 6:283-290
    • (1999) DNA Res , vol.6 , pp. 283-290
    • Sato, S.1    Nakmura, Y.2    Kaneko, T.3    Asamizu, E.4    Tabata, S.5
  • 29
    • 0035082732 scopus 로고    scopus 로고
    • The plastid chromosome of spinach (Spinacia oleracea): Complete nucleotide sequence and gene organization
    • Schmitz-Linneweber CR, Maier M, Alcaraz J, Cottet A, Herrmann RG, Mache R (2001) The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization. Plant Mol Biol 45:307-315
    • (2001) Plant Mol Biol , vol.45 , pp. 307-315
    • Schmitz-Linneweber, C.R.1    Maier, M.2    Alcaraz, J.3    Cottet, A.4    Herrmann, R.G.5    Mache, R.6
  • 30
    • 0030472061 scopus 로고    scopus 로고
    • Genetic markers, map construction, and their application in plant breeding
    • Staub JE, Serquen FC, Gupta M (1996) Genetic markers, map construction, and their application in plant breeding. Hortscience 31:729-740
    • (1996) Hortscience , vol.31 , pp. 729-740
    • Staub, J.E.1    Serquen, F.C.2    Gupta, M.3
  • 31
    • 0030737987 scopus 로고    scopus 로고
    • Genetic diversity in cucumber (Cucumis sativus L.). III. An evaluation of Indian germplasm
    • Staub JE, Serquen FC, McCreight JD (1997) Genetic diversity in cucumber (Cucumis sativus L.). III. An evaluation of Indian germplasm. Genetic Resour Crop Evol 44:315-326
    • (1997) Genetic Resour Crop Evol , vol.44 , pp. 315-326
    • Staub, J.E.1    Serquen, F.C.2    McCreight, J.D.3
  • 32
    • 0026261665 scopus 로고
    • Universal primers for amplification of three non-coding regions of chloroplast DNA
    • Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol 17:1105-1110
    • (1991) Plant Mol Biol , vol.17 , pp. 1105-1110
    • Taberlet, P.1    Gielly, L.2    Pautou, G.3    Bouvet, J.4
  • 33
    • 0031415343 scopus 로고    scopus 로고
    • Characterization and inheritance of polymorphic plastid microsatellites in Abies
    • Vendramin GG, Ziegenhagen B (1997) Characterization and inheritance of polymorphic plastid microsatellites in Abies. Genome 40:857-864
    • (1997) Genome , vol.40 , pp. 857-864
    • Vendramin, G.G.1    Ziegenhagen, B.2
  • 34
    • 0030208885 scopus 로고    scopus 로고
    • A set of primers for the amplification of 20 chloroplast microsatellites in Pinaceae
    • Vendramin GG, Lelli L, Rossi P, Morgante M (1996) A set of primers for the amplification of 20 chloroplast microsatellites in Pinaceae. Mol Ecol 5:595-598
    • (1996) Mol Ecol , vol.5 , pp. 595-598
    • Vendramin, G.G.1    Lelli, L.2    Rossi, P.3    Morgante, M.4
  • 35
    • 0012296704 scopus 로고
    • Determination and interpretation of comigrating allozymes among genera of the Benincaseae (Cucurbitaceae)
    • Walters TW, Decker Walters DS, Posluszny U, Kevan PG (1991) Determination and interpretation of comigrating allozymes among genera of the Benincaseae (Cucurbitaceae). Syst Bot 16:30-40
    • (1991) Syst Bot , vol.16 , pp. 30-40
    • Walters, T.W.1    Decker Walters, D.S.2    Posluszny, U.3    Kevan, P.G.4
  • 36
    • 0033081919 scopus 로고    scopus 로고
    • A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms
    • Weising K, Gardner RC (1999) A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms. Genome 42:9-19
    • (1999) Genome , vol.42 , pp. 9-19
    • Weising, K.1    Gardner, R.C.2
  • 37
    • 0023462635 scopus 로고
    • Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNA
    • Wolfe KH, Li WH, Sharp PM (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNA. Proc Natl Acad Sci USA 84:9054-9058
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 9054-9058
    • Wolfe, K.H.1    Li, W.H.2    Sharp, P.M.3
  • 38
    • 0036047666 scopus 로고    scopus 로고
    • Genome sequencing of a 239-kb region of rice chromosome 10L reveals a high frequency of gene duplication and a large chloroplast DNA insertion
    • Yuan Q, Hill J, Hsiao J, Moffat K, Ouyang S, Cheng Z, Jiang J, Buell CR (2002) Genome sequencing of a 239-kb region of rice chromosome 10L reveals a high frequency of gene duplication and a large chloroplast DNA insertion. Mol Gen Genomics 267:713-720
    • (2002) Mol Gen Genomics , vol.267 , pp. 713-720
    • Yuan, Q.1    Hill, J.2    Hsiao, J.3    Moffat, K.4    Ouyang, S.5    Cheng, Z.6    Jiang, J.7    Buell, C.R.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.