-
1
-
-
0038032028
-
Dinucleotide repeats in the Drosophila and human genomes have complex, length-dependent mutation processes
-
Calabrese P, Durrett R (2003) Dinucleotide repeats in the Drosophila and human genomes have complex, length-dependent mutation processes. Mol Biol Evol 20:715-725
-
(2003)
Mol Biol Evol
, vol.20
, pp. 715-725
-
-
Calabrese, P.1
Durrett, R.2
-
3
-
-
0034760974
-
Dynamics of microsatellite divergence under stepwise mutation and proportional slippage/point mutation models
-
Calabrese PP, Durrett RT, Aquadro CF (2001) Dynamics of microsatellite divergence under stepwise mutation and proportional slippage/point mutation models. Genetics 159:839-852
-
(2001)
Genetics
, vol.159
, pp. 839-852
-
-
Calabrese, P.P.1
Durrett, R.T.2
Aquadro, C.F.3
-
4
-
-
0036434401
-
Sequence divergence of rice microsatellites in Oryza and other plant species
-
Chen X, Cho YG, McCouch SR (2002) Sequence divergence of rice microsatellites in Oryza and other plant species. Mol Gen Genome 268:331-341
-
(2002)
Mol Gen Genome
, vol.268
, pp. 331-341
-
-
Chen, X.1
Cho, Y.G.2
McCouch, S.R.3
-
5
-
-
0030478757
-
Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data
-
Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001-2014
-
(1996)
Genetics
, vol.144
, pp. 2001-2014
-
-
Cornuet, J.M.1
Luikart, G.2
-
6
-
-
0028325745
-
Mutational processes of simple-sequence repeat loci in human populations
-
Di Renzo A, Peterson AC, Garca JC, Valdes AM, Slatkin M, Freimer NB (1994) Mutational processes of simple-sequence repeat loci in human populations. Proc Natl Acad Sci USA 91:3166-3170
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 3166-3170
-
-
Di Renzo, A.1
Peterson, A.C.2
Garca, J.C.3
Valdes, A.M.4
Slatkin, M.5
Freimer, N.B.6
-
7
-
-
0033236731
-
A new stochastic model of microsatellite evolution
-
Durrett R, Kruglyak S (1999) A new stochastic model of microsatellite evolution. J Appl Prob 36:621-631
-
(1999)
J Appl Prob
, vol.36
, pp. 621-631
-
-
Durrett, R.1
Kruglyak, S.2
-
8
-
-
3042782819
-
Microsatellites: Simple sequences with complex evolution
-
Ellegren H (2004) Microsatellites: simple sequences with complex evolution. Nat Rev Genet 5:435-445
-
(2004)
Nat Rev Genet
, vol.5
, pp. 435-445
-
-
Ellegren, H.1
-
9
-
-
0031015402
-
Microsatellite genetic distances with range constraints: Analytic description and problems of estimation
-
Feldman MW, Bergman A, Pollock DD, Goldstein DB (1997) Microsatellite genetic distances with range constraints: analytic description and problems of estimation. Genetics 145:207-216
-
(1997)
Genetics
, vol.145
, pp. 207-216
-
-
Feldman, M.W.1
Bergman, A.2
Pollock, D.D.3
Goldstein, D.B.4
-
10
-
-
0029053186
-
Microsatellite allele frequencies in humans and chimpanzees, with implications for constraints on allele size
-
Garza JC, Slatkin M, Freimer NB (1995) Microsatellite allele frequencies in humans and chimpanzees, with implications for constraints on allele size. Mol Biol Evol 12:594-603
-
(1995)
Mol Biol Evol
, vol.12
, pp. 594-603
-
-
Garza, J.C.1
Slatkin, M.2
Freimer, N.B.3
-
11
-
-
0035214989
-
Evaluation of allelic diversity at chloroplast microsatellite loci among common wheat and its ancestral species
-
Ishii T, Mori N, Ogihara Y (2001) Evaluation of allelic diversity at chloroplast microsatellite loci among common wheat and its ancestral species. Theor Appl Genet 103:896-904
-
(2001)
Theor Appl Genet
, vol.103
, pp. 896-904
-
-
Ishii, T.1
Mori, N.2
Ogihara, Y.3
-
12
-
-
33845684713
-
The evolutionary history of the common chloroplast genome of Arabidopsis thaliana and A. suecica
-
DOI 10.1111/j.1420-9101.2006.01217.x
-
Jakobsson M, Säll T, Lind-Halldén C, Halldén C (2006a) The evolutionary history of the common chloroplast genome of Arabidopsis thaliana and A. suecica. J Evol Biol. DOI 10.1111/j.1420-9101.2006.01217.x
-
(2006)
J Evol Biol
-
-
Jakobsson, M.1
Säll, T.2
Lind-Halldé, C.3
Halldén, C.4
-
13
-
-
33646890870
-
A unique recent origin of the allotetraploid species Arabidopsis suecica: Evidence from nuclear DNA markers
-
Jakobsson M, Hagenblad J, Tavaré S, Säll T, Halldén C, Lind-Halldén C, Nordborg M (2006b) A unique recent origin of the allotetraploid species Arabidopsis suecica: evidence from nuclear DNA markers. Mol Biol Evol 23:1217-1231
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1217-1231
-
-
Jakobsson, M.1
Hagenblad, J.2
Tavaré, S.3
Säll, T.4
Halldén, C.5
Lind-Halldén, C.6
Nordborg, M.7
-
14
-
-
0034946803
-
Differential distribution of simple sequence repeats in eukaryotic genome sequences
-
Katti MV, Ranjekar PK, Gupta VS (2001) Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol Biol Evol 18:1161-1167
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1161-1167
-
-
Katti, M.V.1
Ranjekar, P.K.2
Gupta, V.S.3
-
15
-
-
0033804889
-
Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis and related genera (Brassicaceae)
-
Koch MA, Haubold B, Mitchell-Olds T (2000) Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis and related genera (Brassicaceae). Mol Biol Evol 17:1483-1498
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1483-1498
-
-
Koch, M.A.1
Haubold, B.2
Mitchell-Olds, T.3
-
16
-
-
0032168989
-
Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations
-
Kruglyak S, Durrett RT, Schug MD, Aquadro CF (1998) Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations. Proc Natl Acad Sci USA 95:10774-10778
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 10774-10778
-
-
Kruglyak, S.1
Durrett, R.T.2
Schug, M.D.3
Aquadro, C.F.4
-
17
-
-
0003421005
-
-
Sinauer Associates Inc. Publishers, Sunderland
-
Li W-H (1997) Molecular evolution. Sinauer Associates Inc. Publishers, Sunderland
-
(1997)
Molecular Evolution
-
-
Li, W.-H.1
-
18
-
-
22844434137
-
Genealogical use of chloroplast DNA variation for intraspecific studies of Aegilops taushcii Coss
-
Matsuoka Y, Mori N, Kawahara T (2005) Genealogical use of chloroplast DNA variation for intraspecific studies of Aegilops taushcii Coss. Theor Appl Genet 111:265-271
-
(2005)
Theor Appl Genet
, vol.111
, pp. 265-271
-
-
Matsuoka, Y.1
Mori, N.2
Kawahara, T.3
-
19
-
-
0033951367
-
Selection against frameshift mutations limits microsatellite expansion in coding DNA
-
Metzgar D, Bytof J, Wills C (2000) Selection against frameshift mutations limits microsatellite expansion in coding DNA. Genome Res 10:72-80
-
(2000)
Genome Res
, vol.10
, pp. 72-80
-
-
Metzgar, D.1
Bytof, J.2
Wills, C.3
-
21
-
-
0015765702
-
A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population
-
Ohta T, Kimura M (1973) A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet Res 22:201-204
-
(1973)
Genet Res
, vol.22
, pp. 201-204
-
-
Ohta, T.1
Kimura, M.2
-
22
-
-
0002696220
-
Chloroplast DNA evolution and biosystematic uses of chloroplast DNA variation
-
Palmer JD (1987) Chloroplast DNA evolution and biosystematic uses of chloroplast DNA variation. Am Nat 130:S6-S29
-
(1987)
Am Nat
, vol.130
-
-
Palmer, J.D.1
-
23
-
-
0029101585
-
Polymorphic simple sequence repeat regions in chloroplast genomes: Applications to the population genetics of pines
-
Powell W, Morgante M, McDevitt R, Vendramin GG, Rafalski JA (1995) Polymorphic simple sequence repeat regions in chloroplast genomes: applications to the population genetics of pines. Proc Natl Acad Sci USA 92:7759-7763
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 7759-7763
-
-
Powell, W.1
Morgante, M.2
McDevitt, R.3
Vendramin, G.G.4
Rafalski, J.A.5
-
24
-
-
0034525723
-
Novel chloroplast microsatellites reveal cytoplasmic variation in Arabidopsis thaliana
-
Provan J (2000) Novel chloroplast microsatellites reveal cytoplasmic variation in Arabidopsis thaliana. Mol Ecol 9:2183-2185
-
(2000)
Mol Ecol
, vol.9
, pp. 2183-2185
-
-
Provan, J.1
-
25
-
-
0029843474
-
DNA fingerprints of rice (Oryza sativa) obtained from hypervariable chloroplast simple sequence repeats
-
Provan J, Corbett G, Waugh R, McNicol JW, Morgante M, Powell W (1996) DNA fingerprints of rice (Oryza sativa) obtained from hypervariable chloroplast simple sequence repeats. Proc R Soc Lond B 263:1275-1281
-
(1996)
Proc R Soc Lond B
, vol.263
, pp. 1275-1281
-
-
Provan, J.1
Corbett, G.2
Waugh, R.3
McNicol, J.W.4
Morgante, M.5
Powell, W.6
-
26
-
-
0032558422
-
Gene-pool variation in Caledonian and Scots pine (Pinus sylvestris L.) revealed by chloroplast simple sequence repeats
-
Provan J, Soranzo N, Wilson NJ, McNicol JW, Forrest GI, Cottrell J, Powell W (1998) Gene-pool variation in Caledonian and Scots pine (Pinus sylvestris L.) revealed by chloroplast simple sequence repeats. Proc R Soc Lond B 265:1697-1705
-
(1998)
Proc R Soc Lond B
, vol.265
, pp. 1697-1705
-
-
Provan, J.1
Soranzo, N.2
Wilson, N.J.3
McNicol, J.W.4
Forrest, G.I.5
Cottrell, J.6
Powell, W.7
-
27
-
-
0032822878
-
A low mutation rate for chloroplast microsatellites
-
Provan J, Soranzo N, Wilson NJ, Goldstein DB, Powell W (1999) A low mutation rate for chloroplast microsatellites. Genetics 153:943-946
-
(1999)
Genetics
, vol.153
, pp. 943-946
-
-
Provan, J.1
Soranzo, N.2
Wilson, N.J.3
Goldstein, D.B.4
Powell, W.5
-
28
-
-
0035283384
-
Chloroplast microsatellites: New tools for studies in plant ecology and evolution
-
Provan J, Powell W, Hollingsworth PM (2001) Chloroplast microsatellites: new tools for studies in plant ecology and evolution. Trends Ecol Evol 16:142-147
-
(2001)
Trends Ecol Evol
, vol.16
, pp. 142-147
-
-
Provan, J.1
Powell, W.2
Hollingsworth, P.M.3
-
29
-
-
0034201441
-
Emboss: The European molecular biology open software unit
-
Rice P, Longden I, Bleasby A (2000) Emboss: the European molecular biology open software unit. Trends Genet 16:276-277
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
30
-
-
0032063424
-
A threshold size for microsatellite expansion
-
Rose O, Falush D (1998) A threshold size for microsatellite expansion. Mol Biol Evol 15:613-615
-
(1998)
Mol Biol Evol
, vol.15
, pp. 613-615
-
-
Rose, O.1
Falush, D.2
-
31
-
-
0043241879
-
Chloroplast DNA indicate a single origin of the allotetraploid Arabidopsis suecica
-
Säll T, Jakobsson M, Lind-Halldén C, Halldén C (2003) Chloroplast DNA indicate a single origin of the allotetraploid Arabidopsis suecica. J Evol Biol 16:1019-1029
-
(2003)
J Evol Biol
, vol.16
, pp. 1019-1029
-
-
Säll, T.1
Jakobsson, M.2
Lind-Halldén, C.3
Halldén, C.4
-
32
-
-
0033615372
-
Complete structure of the chloroplast genome of Arabidopsis thaliana
-
Sato S, Nakamura Y, Kaneko T, Asamizu E, Tabata S (1999) Complete structure of the chloroplast genome of Arabidopsis thaliana. DNA Res 6:283-290
-
(1999)
DNA Res
, vol.6
, pp. 283-290
-
-
Sato, S.1
Nakamura, Y.2
Kaneko, T.3
Asamizu, E.4
Tabata, S.5
-
33
-
-
0035100593
-
A maximum-likelihood approach to fitting equilibrium models of microsatellite evolution
-
Sibly RM, Whittaker JC, Talbot M (2001) A maximum-likelihood approach to fitting equilibrium models of microsatellite evolution. Mol Biol Evol 8:413-417
-
(2001)
Mol Biol Evol
, vol.8
, pp. 413-417
-
-
Sibly, R.M.1
Whittaker, J.C.2
Talbot, M.3
-
34
-
-
0037360197
-
The structure of interrupted human AC microsatellites
-
Sibly RM, Meade A, Boxall N, Wilkinson MJ, Corne DW, Whittaker JC (2003) The structure of interrupted human AC microsatellites. Mol Biol Evol 20:453-459
-
(2003)
Mol Biol Evol
, vol.20
, pp. 453-459
-
-
Sibly, R.M.1
Meade, A.2
Boxall, N.3
Wilkinson, M.J.4
Corne, D.W.5
Whittaker, J.C.6
-
36
-
-
0346991740
-
An analysis of microsatellite loci in Arabidopsis thaliana: Mutational dynamics and application
-
Symonds VV, Lloyd AM (2003) An analysis of microsatellite loci in Arabidopsis thaliana: mutational dynamics and application. Genetics 165:1475-1488
-
(2003)
Genetics
, vol.165
, pp. 1475-1488
-
-
Symonds, V.V.1
Lloyd, A.M.2
-
37
-
-
0032797377
-
High levels of variation at Abies alba chloroplast microsatellite loci in Europe
-
Vendramin GG, Degen B, Petit RJ, Anzidel M, Madaghiele A, Ziegenhagen B (1999) High levels of variation at Abies alba chloroplast microsatellite loci in Europe. Mol Ecol 8:1117-1112
-
(1999)
Mol Ecol
, vol.8
, pp. 1117-1112
-
-
Vendramin, G.G.1
Degen, B.2
Petit, R.J.3
Anzidel, M.4
Madaghiele, A.5
Ziegenhagen, B.6
-
38
-
-
0025157834
-
n polymorphisms
-
n polymorphisms. Genomics 7:524-530
-
(1990)
Genomics
, vol.7
, pp. 524-530
-
-
Weber, J.L.1
-
39
-
-
0027161022
-
Mutation of human short tandem repeats
-
Weber JL, Wong C (1993) Mutation of human short tandem repeats. Hum Mol Genet 8:1123-1128
-
(1993)
Hum Mol Genet
, vol.8
, pp. 1123-1128
-
-
Weber, J.L.1
Wong, C.2
-
40
-
-
0036942644
-
Diversity of chloroplast DNA SSRs in wild and cultivated soybeans: Evidence for multiple origins of cultivated soybean
-
Xu DH, Abe J, Gai JH, Shimamoto Y (2002) Diversity of chloroplast DNA SSRs in wild and cultivated soybeans: evidence for multiple origins of cultivated soybean. Theor Appl Genet 105:645-653
-
(2002)
Theor Appl Genet
, vol.105
, pp. 645-653
-
-
Xu, D.H.1
Abe, J.2
Gai, J.H.3
Shimamoto, Y.4
|