Development of microsatellites of Dendrobium officinale and its application in purity identification of germplasm

Yaoxue Xuebao

Volumn 45, Issue 5, 2010, Pages 667-672

  Xie, Ming Lu ^a   Hou, Bei Wei ^a   Han, Li ^a   Ma, Yan Hong ^a   Ding, Xiao Yu ^a  

^a NANJING NORMAL UNIVERSITY   (China)

Author keywords

Dendrobium officinale; Microsatellite development; Purity identification; Transferability detection

Indexed keywords

ARTICLE; DENDROBIUM; DENDROBIUM OFFICINALE; GENE LOCUS; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GERMPLASM; HETEROZYGOSITY; NONHUMAN; POLYMERASE CHAIN REACTION; SIMPLE SEQUENCE REPEAT;

DENDROBIUM; DNA PRIMERS; DNA, PLANT; GENETIC VARIATION; MICROSATELLITE REPEATS; PLANTS, MEDICINAL; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 77954590703     PISSN: 05134870     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (32)

1. Bao XS, Shun QS, Chen LZ. The Medicinal Plants of Dendrobium (Shi-hu) in China [M]. Shanghai: Fudan University Press, 2001: 1-40.
2. The State Pharmacopoeia Commission of the People's Republic of China. Pharmacopoeia of the People's Republic of China [M]. Beijing: Chemical Industry Press, 2000: 70.
3. Ding XY, Xu LS, Xu H, et al. Morphological and DNA molecular evidence for authentication of Dendrobium flexicaule from its allied species of Dendrobium [J]. Acta Pharm Sin, 2001, 36: 868-873. (Pubitemid 33629844)
4. Ding G, Ding XY, Shen J, et al. Genetic diversity and molecular authentication of wide population of Dendrobium officinale by RAPD [J]. Acta Pharm Sin, 2005, 40: 1028-1032.
5. Shen J, Ding XY, Liu DY, et al. Intersimple sequence repeats (ISSR) molecular fingerprinting markers for authenticating population of Dendrobium officinale Kimura et Migo [J]. Biol Pharm Bull, 2006, 29: 420-422.
6. Zhang T, Xu LS, Wang ZT, et al. Molecular identification of medicinal plants: Dendrobium chrysanthum, Dendrobium fimbriatun and their morphologically allied species by PCR-RFLP analyses [J]. Acta Pharm Sin, 2005, 40: 728-733.
7. Ding XY, Wang ZT, Xu H, et al. Database establishment of the whole rDNA ITS region of Dendrobium species of "Fengdou" and authentication by analysis of their sequences [J]. Acta Pharm Sin, 2002, 37: 567-573.
8. Shao SG Han L, Ma YH, et al. Analysis and authentication of cpDNA psbA-trnH regions of Dendrobium species of Fengdous [J]. Acta Pharm Sin, 2009, 44: 1173-1178.
9. Liu J, He T, Chun Z, et al. Analysis and authentication of chloroplast matK gene sequences of Herba Dendrobii [J]. Acta Pharm Sin, 2009, 44, 1051-1055.
10. Sucher NJ, Carles MC. Genome-based approaches to the authentication of medicinal plants [J]. Planta Med, 2008, 74: 603-623. (Pubitemid 351863567)
11. Akagi H, Yokozeki Y, Inagaki A, et al. Microsatellite DNA markers for rice chromosomes [J]. Theor Appl Genet, 1996, 93: 1071-1077. (Pubitemid 27015497)
12. Plaschke J, Ganalm W, Roder MS. MS Detection of genetic diversity in closely elated breed wheat using microsatellite markers [J]. Theor Appl Genet, 1995, 91: 1001-1007.
13. Russell JR. Discrimination between barley genotype using microsatellite markers [J]. Genome, 1997, 40: 442-450. (Pubitemid 28104752)
14. Wehmeier UF. New multifunctional Escherichia coli-Streptomyces shuttle vectors allowing blue-white screening on XGa1 plates [J]. Gene, 1995, 165: 149-150.
15. Anderson JA, Churchill GA, Sutrigue JE, et al. Optimizing parental selection forgenetic linkagemaps [J]. Genome, 1993, 36: 181-186.
16. Kimura M, Crow JF. The number of alleles that can be maintained in a finite population [J]. Genetics, 1964, 49: 725-738.
17. Raymond M, Rousset F. Genepop (version 1.2): population genetics software for exact tests and ecumenicism [J]. J Hered, 1995, 86: 248-249.
18. Nei M. Molecular Evolutionary Genetics [M]. New York: Columbia University Press, 1987.
19. Bostein D, White RL, Skolnick M, et al. Construction of a genetic linkage maps in man using restriction fragment length polymorphisms [J]. Am J Hum Genet, 1980, 32: 314-331. (Pubitemid 11105557)
20. Shi HB, Wang LX, Li HB, et al. Division of seeds motley and SSR loci impurity in wheat cultivar using SSR markers [J]. Mol Plant Breed, 2006, 4: 513-519.
21. Li G, Hu W, Qin R, et al. Simple sequence repeat analyses of interspecific hybrids and MAALs of Oryza officinalis and Oryza sativa [J]. Genetica, 2008, 134: 169-180.
22. Reif JC, Warburton ML, Xia XC, et al. Grouping of accessions of Mexican races of maize revisited with SSR markers [J]. Theor Appl Genet, 2006, 113: 177-185.
23. Gianfranceschi L, Seglias N, Tarchini R, et al. Simple sequence repeats for the genetic analysis of apple [J]. Theor Appl Genet, 1998, 96: 1069-1076. (Pubitemid 28332974)
24. Zane L, Bargelloni L, Patarnello T. Strategies for microsatellite isolation: a review [J]. Mol Ecol, 2002, 11: 1-16.
25. Kendall MD. Rank Correlation Methods [M]. 3rd ed. London: Charles Griffin, 1970.
26. Morris DB, Richard KR, Wright JM. Microsatellites from rainbow trout (Oncorhynchus mykiss) and their use for genetic studies of salmonids [J]. Can J Fish Aquat Sei, 1996, 53: 120-126.
27. Fitzsimmons NN, Moritz C, Moore SS. Conservation and dynamics of microsatellite loci over 300 million years of marine turtle evolution [J]. Mol Biol Evol, 1995, 12: 432-440.
28. MacRitcbie D, Sun GL. Evaluating the potential of barley and wheat microsatellite markers for genetic analysis of Elymus trachycaulus complex species [J]. Theor Appl Genet, 2004, 108: 720-724.
29. Treuren RV, Kuttinen H, Karkkainen K, et al. Evolution of microsatellites in Arabis petraea and Arabis lyrata, outcrossing relatives of Arabidopsis thaliana [J]. Mol Biol Evol, 1997, 14: 220-229.
30. Ma KH, Kim NS, Lee GA, et al. Development of SSR markers for studies of diversity in the genus Fagopyrum [J]. Theor Appl Genet, 2009, 119: 1247-1254.
31. Gonzalez-Martinez SC, Gonzalez-Martinez SC, Collada C, et al. Cross-amplification and sequence variation of microsatellite loci in Eurasian hard pines [J]. Theor Appl Genet, 2004, 109: 103-111. (Pubitemid 38908555)
32. Hodgetts RB, Aleksiuk MA, Brown A, et al. Development of microsatellite markers for white spruce (Picea glauca) and related species [J]. Theor Appl Genet, 2001, 102: 1252-1258.