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Volumn 13, Issue 4, 2011, Pages 922-931

Ubiquity of Polynucleobacter necessarius subspecies asymbioticus results from ecological diversification

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FRESH WATER; RIBOSOMAL SPACER DNA; RNA 16S;

EID: 79953291010     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2010.02396.x     Document Type: Article
Times cited : (73)

References (44)
  • 1
    • 33750969711 scopus 로고    scopus 로고
    • Culture isolation and culture-independent clone libraries reveal new marine Synechococcus ecotypes with distinctive light and N physiologies
    • Ahlgren, N.A., and Rocap, G. (2006) Culture isolation and culture-independent clone libraries reveal new marine Synechococcus ecotypes with distinctive light and N physiologies. Appl Environ Microbiol 72: 7193-7204.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 7193-7204
    • Ahlgren, N.A.1    Rocap, G.2
  • 2
    • 63849206547 scopus 로고    scopus 로고
    • Ecophysiological differences of betaproteobacterial populations in two hydrochemically distinct compartments of a subtropical lagoon
    • Alonso, C., Zeder, M., Piccini, C., Conde, D., and Pernthaler, J. (2009) Ecophysiological differences of betaproteobacterial populations in two hydrochemically distinct compartments of a subtropical lagoon. Environ Microbiol 11: 867-876.
    • (2009) Environ Microbiol , vol.11 , pp. 867-876
    • Alonso, C.1    Zeder, M.2    Piccini, C.3    Conde, D.4    Pernthaler, J.5
  • 4
    • 0242657623 scopus 로고    scopus 로고
    • Members of a readily enriched b-proteobacterial clade are common in surface waters of a humic lake
    • Burkert, U., Warnecke, F., Babenzien, D., Zwirnmann, E., and Pernthaler, J. (2003) Members of a readily enriched b-proteobacterial clade are common in surface waters of a humic lake. Appl Environ Microbiol 69: 6550-6559.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6550-6559
    • Burkert, U.1    Warnecke, F.2    Babenzien, D.3    Zwirnmann, E.4    Pernthaler, J.5
  • 5
    • 0036407157 scopus 로고    scopus 로고
    • What are bacterial species?
    • Cohan, F.M. (2002) What are bacterial species? Annu Rev Microbiol 56: 457-487.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 457-487
    • Cohan, F.M.1
  • 6
    • 28044457197 scopus 로고    scopus 로고
    • Synchrony and seasonality in bacterioplankton communities of two temperate rivers
    • Crump, B.C., and Hobbie, J.E. (2005) Synchrony and seasonality in bacterioplankton communities of two temperate rivers. Limnol Oceanogr 50: 1718-1729.
    • (2005) Limnol Oceanogr , vol.50 , pp. 1718-1729
    • Crump, B.C.1    Hobbie, J.E.2
  • 8
    • 0037052531 scopus 로고    scopus 로고
    • Global dispersal of free-living microbial eukaryote species
    • Finlay, B.J. (2002) Global dispersal of free-living microbial eukaryote species. Science 296: 1061-1063.
    • (2002) Science , vol.296 , pp. 1061-1063
    • Finlay, B.J.1
  • 9
    • 3042701611 scopus 로고    scopus 로고
    • Adaptation of sympatric Achromatium spp. to different redox conditions as a mechanism for coexistence of functionally similar sulphur bacteria
    • Gray, N.D., Comaskey, D., Miskin, I.P., Pickup, R.W., Suzuki, K., and Head, I.M. (2004) Adaptation of sympatric Achromatium spp. to different redox conditions as a mechanism for coexistence of functionally similar sulphur bacteria. Environ Microbiol 6: 669-677.
    • (2004) Environ Microbiol , vol.6 , pp. 669-677
    • Gray, N.D.1    Comaskey, D.2    Miskin, I.P.3    Pickup, R.W.4    Suzuki, K.5    Head, I.M.6
  • 10
    • 35948933458 scopus 로고    scopus 로고
    • The biogeographical distribution of closely related freshwater sediment bacteria is determined by environmental selection
    • Gray, N.D., Brown, A., Nelson, D.R., Pickup, R.W., Rowan, A.K., and Head, I.M. (2007) The biogeographical distribution of closely related freshwater sediment bacteria is determined by environmental selection. ISME J 1: 596-605.
    • (2007) ISME J , vol.1 , pp. 596-605
    • Gray, N.D.1    Brown, A.2    Nelson, D.R.3    Pickup, R.W.4    Rowan, A.K.5    Head, I.M.6
  • 11
    • 0141816854 scopus 로고    scopus 로고
    • Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones
    • Hahn, M.W. (2003) Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones. Appl Environ Microbiol 69: 5248-5254.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5248-5254
    • Hahn, M.W.1
  • 12
    • 13544252535 scopus 로고    scopus 로고
    • Ecotypes of planktonic Actinobacteria with identical 16S rRNA genes adapted to thermal niches in temperate, subtropical, and tropical freshwater habitats
    • Hahn, M.W., and Pöckl, M. (2005) Ecotypes of planktonic Actinobacteria with identical 16S rRNA genes adapted to thermal niches in temperate, subtropical, and tropical freshwater habitats. Appl Environ Microbiol 71: 766-773.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 766-773
    • Hahn, M.W.1    Pöckl, M.2
  • 13
    • 2342608928 scopus 로고    scopus 로고
    • The filtration-acclimatization method for isolation of an important fraction of the not readily cultivable bacteria
    • Hahn, M.W., Stadler, P., Wu, Q.L., and Pöckl, M. (2004) The filtration-acclimatization method for isolation of an important fraction of the not readily cultivable bacteria. J Microbiol Methods 57: 379-390.
    • (2004) J Microbiol Methods , vol.57 , pp. 379-390
    • Hahn, M.W.1    Stadler, P.2    Wu, Q.L.3    Pöckl, M.4
  • 14
    • 23744486525 scopus 로고    scopus 로고
    • Low intraspecific diversity in a Polynucleobacter subcluster population numerically dominating bacterioplankton of a freshwater pond
    • Hahn, M.W., Pöckl, M., and Wu, Q.L. (2005) Low intraspecific diversity in a Polynucleobacter subcluster population numerically dominating bacterioplankton of a freshwater pond. Appl Environ Microbiol 71: 4539-4547.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4539-4547
    • Hahn, M.W.1    Pöckl, M.2    Wu, Q.L.3
  • 15
    • 70349329727 scopus 로고    scopus 로고
    • Emended description of the genus Polynucleobacter and the species P necessarius and proposal of two subspecies, P necessarius subspecies necessarius subsp nov and P necessarius subsp asymbioticus subsp nov
    • Hahn, M.W., Lang, E., Brandt, U., Wu, Q.L., and Scheuerl, T. (2009) Emended description of the genus Polynucleobacter and the species P necessarius and proposal of two subspecies, P necessarius subspecies necessarius subsp nov and P necessarius subsp asymbioticus subsp nov. Int J Syst Evol Microbiol 59: 2002-2009.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 2002-2009
    • Hahn, M.W.1    Lang, E.2    Brandt, U.3    Wu, Q.L.4    Scheuerl, T.5
  • 17
    • 0030872627 scopus 로고    scopus 로고
    • Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences
    • Hiorns, W.D., Methé, E.A., Nierzwickibauer, S.A., and Zehr, J.P. (1997) Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences. Appl Environ Microbiol 63: 2957-2960.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2957-2960
    • Hiorns, W.D.1    Methé, E.A.2    Nierzwickibauer, S.A.3    Zehr, J.P.4
  • 18
    • 44449178480 scopus 로고    scopus 로고
    • Resource partitioning and sympatric differentiation among closely related bacterioplankton
    • Hunt, D.E., David, L.A., Gevers, D., Preheim, S.P., Alm, E.J., and Polz, M.F. (2008) Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320: 1081-1085.
    • (2008) Science , vol.320 , pp. 1081-1085
    • Hunt, D.E.1    David, L.A.2    Gevers, D.3    Preheim, S.P.4    Alm, E.J.5    Polz, M.F.6
  • 19
    • 4143136662 scopus 로고    scopus 로고
    • The ecological significance of 'microdiversity': identical 16S rRNA gene sequences represent bacteria with highly divergent genomes and physiology
    • Jaspers, E., and Overmann, J. (2004) The ecological significance of 'microdiversity': identical 16S rRNA gene sequences represent bacteria with highly divergent genomes and physiology. Appl Environ Microbiol 70: 4831-4839.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4831-4839
    • Jaspers, E.1    Overmann, J.2
  • 21
    • 3843057827 scopus 로고    scopus 로고
    • Biodiversity in metacommunities: plankton as complex adaptive systems?
    • Leibold, M., and Norberg, J. (2004) Biodiversity in metacommunities: plankton as complex adaptive systems? Limnol Oceanogr 49: 1278-1289.
    • (2004) Limnol Oceanogr , vol.49 , pp. 1278-1289
    • Leibold, M.1    Norberg, J.2
  • 22
    • 0000065728 scopus 로고
    • Some demographic and genetic consequences of environmental heterogeneity for biological control
    • Levins, R. (1969) Some demographic and genetic consequences of environmental heterogeneity for biological control. Bull Entomol Soc Am 15: 237-240.
    • (1969) Bull Entomol Soc Am , vol.15 , pp. 237-240
    • Levins, R.1
  • 23
    • 36649000501 scopus 로고    scopus 로고
    • Phylogenetic ecology of the freshwater Actinobacteria acI lineage
    • Newton, R.J., Jones, S.E., Helmus, M.R., and McMahon, K.D. (2007) Phylogenetic ecology of the freshwater Actinobacteria acI lineage. Appl Environ Microbiol 73: 7169-7176.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 7169-7176
    • Newton, R.J.1    Jones, S.E.2    Helmus, M.R.3    McMahon, K.D.4
  • 24
    • 50149083715 scopus 로고    scopus 로고
    • 'Everything is everywhere: but the environment selects': ubiquitous distribution and ecological determinism in microbial biogeography
    • O'Malley, M.A. (2008) 'Everything is everywhere: but the environment selects': ubiquitous distribution and ecological determinism in microbial biogeography. Stud Hist Phil Biol Biomed Sci 39: 314-325.
    • (2008) Stud Hist Phil Biol Biomed Sci , vol.39 , pp. 314-325
    • O'Malley, M.A.1
  • 26
    • 0038542819 scopus 로고    scopus 로고
    • Bacterioplankton community diversity in a maritime Antarctic lake, determined by culture-dependent and culture-independent techniques
    • Pearce, D.A., van der Gast, C.J., Lawley, B., and Ellis-Evans, J.C. (2003) Bacterioplankton community diversity in a maritime Antarctic lake, determined by culture-dependent and culture-independent techniques. FEMS Microbiol Ecol 45: 59-70.
    • (2003) FEMS Microbiol Ecol , vol.45 , pp. 59-70
    • Pearce, D.A.1    van der Gast, C.J.2    Lawley, B.3    Ellis-Evans, J.C.4
  • 28
    • 52949126446 scopus 로고    scopus 로고
    • Spatio-temporal niche separation of planktonic Betaproteobacteria in an oligo-mesotrophic lake
    • Salcher, M.M., Pernthaler, J., Zeder, M., Psenner, R., and Posch, T. (2008) Spatio-temporal niche separation of planktonic Betaproteobacteria in an oligo-mesotrophic lake. Environ Microbiol 10: 2074-2086.
    • (2008) Environ Microbiol , vol.10 , pp. 2074-2086
    • Salcher, M.M.1    Pernthaler, J.2    Zeder, M.3    Psenner, R.4    Posch, T.5
  • 29
    • 26844517947 scopus 로고    scopus 로고
    • Ecological differentiation within a cosmopolitan group of planktonic freshwater bacteria (SOL cluster, Saprospiraceae, Bacteroidetes)
    • Schauer, M., Kamenik, C., and Hahn, M.W. (2005) Ecological differentiation within a cosmopolitan group of planktonic freshwater bacteria (SOL cluster, Saprospiraceae, Bacteroidetes). Appl Environ Microbiol 71: 5900-5907.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 5900-5907
    • Schauer, M.1    Kamenik, C.2    Hahn, M.W.3
  • 30
    • 0036795083 scopus 로고    scopus 로고
    • Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis
    • Sekiguchi, H., Watanabe, M., Nakahara, T., Xu, B.H., and Uchiyama, H. (2002) Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis. Appl Environ Microbiol 68: 5142-5150.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5142-5150
    • Sekiguchi, H.1    Watanabe, M.2    Nakahara, T.3    Xu, B.H.4    Uchiyama, H.5
  • 31
    • 33847003680 scopus 로고    scopus 로고
    • Patterns of thermal adaptation of Bacillus simplex to the microclimatically contrasting slopes of 'Evolution Canyons' I and II, Israel
    • Sikorski, J., and Nevo, E. (2007) Patterns of thermal adaptation of Bacillus simplex to the microclimatically contrasting slopes of 'Evolution Canyons' I and II, Israel. Environ Microbiol 9: 716-726.
    • (2007) Environ Microbiol , vol.9 , pp. 716-726
    • Sikorski, J.1    Nevo, E.2
  • 32
    • 77649214475 scopus 로고    scopus 로고
    • Assessing niche separation in coexisting Limnohabitans strains through interactions with a competitor, viruses, and a bacterivore
    • Šimek, K., Kasalický, V., Hornák, K., Hahn, M.W., and Weinbauer, M.G. (2010) Assessing niche separation in coexisting Limnohabitans strains through interactions with a competitor, viruses, and a bacterivore. Appl Environ Microbiol 76: 1406-1416.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 1406-1416
    • Šimek, K.1    Kasalický, V.2    Hornák, K.3    Hahn, M.W.4    Weinbauer, M.G.5
  • 33
    • 33947302827 scopus 로고    scopus 로고
    • Taxonomic parameters revisited: tarnished gold standards
    • Stackebrandt, E., and Ebers, J. (2006) Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33: 152-155.
    • (2006) Microbiol Today , vol.33 , pp. 152-155
    • Stackebrandt, E.1    Ebers, J.2
  • 34
    • 65649151715 scopus 로고    scopus 로고
    • Vertical diversity of bacteria in an oxygen-stratified humic lake, evaluated using DNA and phospholipid analyses
    • Taipale, S., Jones, R.I., and Tiirola, M. (2009) Vertical diversity of bacteria in an oxygen-stratified humic lake, evaluated using DNA and phospholipid analyses. Aquat Microb Ecol 55: 1-16.
    • (2009) Aquat Microb Ecol , vol.55 , pp. 1-16
    • Taipale, S.1    Jones, R.I.2    Tiirola, M.3
  • 36
    • 38049100699 scopus 로고    scopus 로고
    • The power of species sorting: local factors drive bacterial community composition over a wide range of spatial scale
    • Van der Gucht, K., Cottenie, K., Muylaert, K., Vloemans, N., Cousin, S., Declerck, S., etal. (2007) The power of species sorting: local factors drive bacterial community composition over a wide range of spatial scale. Proc Natl Acad Sci USA 104: 20404-20409.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 20404-20409
    • Van der Gucht, K.1    Cottenie, K.2    Muylaert, K.3    Vloemans, N.4    Cousin, S.5    Declerck, S.6
  • 37
    • 33846127088 scopus 로고    scopus 로고
    • Endosymbiosis in statu nascendi: close phylogenetic relationship between obligately endosymbiotic and obligately free-living Polynucleobacter strains (Betaproteobacteria)
    • Vannini, C., Pöckl, M., Petroni, G., Wu, Q.L., Lang, E., Stackebrandt, E., etal. (2007) Endosymbiosis in statu nascendi: close phylogenetic relationship between obligately endosymbiotic and obligately free-living Polynucleobacter strains (Betaproteobacteria). Environ Microbiol 9: 347-359.
    • (2007) Environ Microbiol , vol.9 , pp. 347-359
    • Vannini, C.1    Pöckl, M.2    Petroni, G.3    Wu, Q.L.4    Lang, E.5    Stackebrandt, E.6
  • 39
    • 0042242559 scopus 로고    scopus 로고
    • Geographic barriers isolate endemic populations of hyperthermophilic archaea
    • Whitaker, R.J., Grogan, D.W., and Taylor, J.W. (2003) Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science 301: 976-978.
    • (2003) Science , vol.301 , pp. 976-978
    • Whitaker, R.J.1    Grogan, D.W.2    Taylor, J.W.3
  • 40
    • 27744553666 scopus 로고    scopus 로고
    • Biogeography: is everything everywhere?
    • Whitfield, J. (2005) Biogeography: is everything everywhere? Science 310: 960-961.
    • (2005) Science , vol.310 , pp. 960-961
    • Whitfield, J.1
  • 41
    • 33745050646 scopus 로고    scopus 로고
    • Differences in structure and dynamics of Polynucleobacter communities in a temperate and a subtropical lake revealed at three phylogenetic levels
    • Wu, Q.L., and Hahn, M.W. (2006) Differences in structure and dynamics of Polynucleobacter communities in a temperate and a subtropical lake revealed at three phylogenetic levels. FEMS Microbiol Ecol 57: 67-79.
    • (2006) FEMS Microbiol Ecol , vol.57 , pp. 67-79
    • Wu, Q.L.1    Hahn, M.W.2
  • 42
    • 33747359120 scopus 로고    scopus 로고
    • Bacterioplankton community composition along a salinity gradient of sixteen high mountain lakes located on the Tibetan Plateau, China
    • Wu, Q.L., Schauer, M., Kamst-van Agterveld, M.P., Zwart, G., and Hahn, M.W. (2006) Bacterioplankton community composition along a salinity gradient of sixteen high mountain lakes located on the Tibetan Plateau, China. Appl Environ Microbiol 72: 5478-5485.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5478-5485
    • Wu, Q.L.1    Schauer, M.2    Kamst-van Agterveld, M.P.3    Zwart, G.4    Hahn, M.W.5
  • 43
    • 0037178021 scopus 로고    scopus 로고
    • Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers
    • Zwart, G., Crump, B.C., Kamst-van Agterveld, M.P., Hagen, F., and Han, S.K. (2002) Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol 28: 141-155.
    • (2002) Aquat Microb Ecol , vol.28 , pp. 141-155
    • Zwart, G.1    Crump, B.C.2    Kamst-van Agterveld, M.P.3    Hagen, F.4    Han, S.K.5


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