-
1
-
-
0034070864
-
The distribution of abundance in neutral communities
-
(doi:10.1086/ 303345)
-
Bell, G. 2000 The distribution of abundance in neutral communities. Am. Nat. 155, 606-617. (doi:10.1086/ 303345)
-
(2000)
Am. Nat.
, vol.155
, pp. 606-617
-
-
Bell, G.1
-
2
-
-
0035964859
-
Ecology - Neutral macroecology
-
(doi:10.1126/science.293.5539.2413)
-
Bell, G. 2001 Ecology - neutral macroecology. Science 293, 2413-2418. (doi:10.1126/science.293.5539.2413)
-
(2001)
Science
, vol.293
, pp. 2413-2418
-
-
Bell, G.1
-
3
-
-
0030860238
-
Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
-
Borneman, J. & Triplett, E. W. 1997 Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63, 2647-2653.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 2647-2653
-
-
Borneman, J.1
Triplett, E.W.2
-
5
-
-
0004182787
-
-
Chicago, IL: University of Chicago Press
-
Brown, J. H. 2000 Macroecology. Chicago, IL: University of Chicago Press.
-
(2000)
Macroecology
-
-
Brown, J.H.1
-
6
-
-
0001463548
-
Nonparametric-estimation of the number of classes in a population
-
Chao, A. 1984 Nonparametric-estimation of the number of classes in a population. Scand. J. Stat. 11, 265-270.
-
(1984)
Scand. J. Stat.
, vol.11
, pp. 265-270
-
-
Chao, A.1
-
7
-
-
0023526239
-
Estimating the population-size for capture recapture data with unequal catchability
-
(doi:10.2307/2531532)
-
Chao, A. 1987 Estimating the population-size for capture recapture data with unequal catchability. Biometrics 43, 783-791. (doi:10.2307/2531532)
-
(1987)
Biometrics
, vol.43
, pp. 783-791
-
-
Chao, A.1
-
8
-
-
0028782130
-
Estimating terrestrial biodiversity through extrapolation
-
Colwell, R. K. & Coddington, J. A. 1994 Estimating terrestrial biodiversity through extrapolation. Phil. Trans. R. Soc. B 345, 101-118.
-
(1994)
Phil. Trans. R. Soc. B
, vol.345
, pp. 101-118
-
-
Colwell, R.K.1
Coddington, J.A.2
-
9
-
-
26844450130
-
Agreement between theory and measurement in quantification of ammonia-oxidizing bacteria
-
(doi:10.1128/AEM.71.10. 6325-6334.2005)
-
Coskuner, G., Ballinger, S. J., Davenport, R. J., Pickering, R. L., Solera, R., Head, I. M. & Curtis, T. P. 2005 Agreement between theory and measurement in quantification of ammonia-oxidizing bacteria. Appl. Environ. Microbiol. 71, 6325-6334. (doi:10.1128/AEM.71.10. 6325-6334.2005)
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 6325-6334
-
-
Coskuner, G.1
Ballinger, S.J.2
Davenport, R.J.3
Pickering, R.L.4
Solera, R.5
Head, I.M.6
Curtis, T.P.7
-
11
-
-
0036677450
-
Estimating prokaryotic diversity and it limits
-
(doi:10.1073/pnas.142680199)
-
Curtis, T. P., Sloan, W. & Scannell, J. 2002 Estimating prokaryotic diversity and it limits. Proc. Natl Acad. Sci. USA 99, 10494-10499. (doi:10.1073/pnas.142680199)
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 10494-10499
-
-
Curtis, T.P.1
Sloan, W.2
Scannell, J.3
-
13
-
-
0025886466
-
A constant rate of spontaneous mutation in DNA-based microbes
-
(doi:10.1073/pnas.88.16.7160)
-
Drake, J. W. 1991 A constant rate of spontaneous mutation in DNA-based microbes. Proc. Natl Acad. Sci. USA 88, 7160-7164. (doi:10.1073/pnas.88.16.7160)
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 7160-7164
-
-
Drake, J.W.1
-
14
-
-
0036269049
-
Empirical and theoretical bacterial diversity in four Arizona soils
-
(doi:10.1128/AEM.68.6.3035-3045.2002)
-
Dunbar, J., Barns, S. M., Ticknor, L. O. & Kuske, C. R. 2002 Empirical and theoretical bacterial diversity in four Arizona soils. Appl. Environ. Microbiol. 68, 3035-3045. (doi:10.1128/AEM.68.6.3035-3045.2002)
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3035-3045
-
-
Dunbar, J.1
Barns, S.M.2
Ticknor, L.O.3
Kuske, C.R.4
-
15
-
-
33751255084
-
The diversity of microbes: Resurgence of the phenotype
-
(doi:10.1098/rstb.2006.1924)
-
Fenchel, T. & Finlay, B. J. 2006 The diversity of microbes: resurgence of the phenotype. Phil. Trans. R. Soc. B 361, 1965-1973. (doi:10.1098/rstb.2006.1924)
-
(2006)
Phil. Trans. R. Soc. B
, vol.361
, pp. 1965-1973
-
-
Fenchel, T.1
Finlay, B.J.2
-
16
-
-
0033607024
-
Ubiquitous dispersal of microbial species
-
(doi:10.1038/23616)
-
Finlay, B. J. & Clarke, K. J. 1999 Ubiquitous dispersal of microbial species. Nature 400, 828. (doi:10.1038/23616)
-
(1999)
Nature
, vol.400
, pp. 828
-
-
Finlay, B.J.1
Clarke, K.J.2
-
17
-
-
0031804722
-
High levels of endemicity of 3-chlorobenzoate-degrading soil bacteria
-
Fulthorpe, R. R., Rhodes, A. N. & Tiedje, J. M. 1998 High levels of endemicity of 3-chlorobenzoate-degrading soil bacteria. Appl. Environ. Microbiol. 64, 1620-1627.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 1620-1627
-
-
Fulthorpe, R.R.1
Rhodes, A.N.2
Tiedje, J.M.3
-
18
-
-
23944525404
-
Computational improvements reveal great bacterial diversity and high metal toxicity in soil
-
(doi:10. 1126/science.1112665)
-
Gans, J., Wolinsky, M. & Dunbar, J. 2005 Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science 309, 1387-1390. (doi:10. 1126/science.1112665)
-
(2005)
Science
, vol.309
, pp. 1387-1390
-
-
Gans, J.1
Wolinsky, M.2
Dunbar, J.3
-
19
-
-
0030872620
-
Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
-
Godon, J. J., Zumstein, E., Dabert, P., Habouzit, F. & Moletta, R. 1997 Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl. Environ. Microbiol. 63, 2802-2813.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 2802-2813
-
-
Godon, J.J.1
Zumstein, E.2
Dabert, P.3
Habouzit, F.4
Moletta, R.5
-
20
-
-
0036306089
-
Use of 16S ribosomal DNA for delineation of marine bacterioplankton species
-
(doi:10.1128/ AEM.68.7.3628-3633.2002)
-
Hagstrom, A., Pommier, T., Rohwer, F., Simu, K., Stolte, W., Svensson, D. & Zweifel, U. L. 2002 Use of 16S ribosomal DNA for delineation of marine bacterioplankton species. Appl. Environ. Microbiol. 68, 3628-3633. (doi:10.1128/ AEM.68.7.3628-3633.2002)
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3628-3633
-
-
Hagstrom, A.1
Pommier, T.2
Rohwer, F.3
Simu, K.4
Stolte, W.5
Svensson, D.6
Zweifel, U.L.7
-
21
-
-
30444458666
-
Predicting microbial species richness
-
(doi:10.1073/pnas.0507245102)
-
Hong, S. H., Bunge, J., Jeon, S. O. & Epstein, S. S. 2006 Predicting microbial species richness. Proc. Natl Acad. Sci. USA 103, 117-122. (doi:10.1073/pnas.0507245102)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 117-122
-
-
Hong, S.H.1
Bunge, J.2
Jeon, S.O.3
Epstein, S.S.4
-
22
-
-
0037742699
-
Bacterial diversity patterns along a gradient of primary productivity
-
(doi:10.1046/j.1461-0248.2003.00472.x)
-
Horner-Devine, M. C., Leibold, M. A., Smith, V. H. & Bohannan, B. J. M. 2003 Bacterial diversity patterns along a gradient of primary productivity. Ecol. Lett. 6, 613-622. (doi:10.1046/j.1461-0248.2003.00472.x)
-
(2003)
Ecol. Lett.
, vol.6
, pp. 613-622
-
-
Horner-Devine, M.C.1
Leibold, M.A.2
Smith, V.H.3
Bohannan, B.J.M.4
-
23
-
-
1442330077
-
Clustering in neutral ecology
-
(doi:10.1103/ PhysRevE.68.061912)
-
Houchmandzadeh, B. & Vallade, M. 2003 Clustering in neutral ecology. Phys. Rev. E 68, 061912. (doi:10.1103/ PhysRevE.68.061912)
-
(2003)
Phys. Rev. E
, vol.68
, pp. 061912
-
-
Houchmandzadeh, B.1
Vallade, M.2
-
25
-
-
0031662188
-
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
-
Hugenholtz, P., Goebel, B. M. & Pace, N. R. 1998 Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180, 4765-4774.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4765-4774
-
-
Hugenholtz, P.1
Goebel, B.M.2
Pace, N.R.3
-
26
-
-
33644838781
-
Denaturing gradient electrophoresis (DGE) and single-strand conformation polymorphism (SSCP) molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity
-
(doi:10.1111/ j.1462-2920.2005.00950.x)
-
Loisel, P., Harmand, J., Zemb, O., Latrille, E., Lobry, C., Delgenes, J. P. & Godon, J. J. 2006 Denaturing gradient electrophoresis (DGE) and single-strand conformation polymorphism (SSCP) molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity. Environ. Microbiol. 8, 720-731. (doi:10.1111/ j.1462-2920.2005.00950.x)
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 720-731
-
-
Loisel, P.1
Harmand, J.2
Zemb, O.3
Latrille, E.4
Lobry, C.5
Delgenes, J.P.6
Godon, J.J.7
-
27
-
-
4644290878
-
Estimating bacterial diversity from clone libraries with flat rank abundance distributions
-
(doi:10.1111/j.1462-2920.2004.00641.x)
-
Lunn, M., Sloan, W. T. & Curtis, T. P. 2004 Estimating bacterial diversity from clone libraries with flat rank abundance distributions. Environ. Microbiol. 6, 1081-1085. (doi:10.1111/j.1462-2920.2004.00641.x)
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 1081-1085
-
-
Lunn, M.1
Sloan, W.T.2
Curtis, T.P.3
-
28
-
-
0000448860
-
On the relative abundance of bird species
-
(doi:10. 1073/pnas.43.3.293)
-
MacArthur, R. 1957 On the relative abundance of bird species. Proc. Natl Acad. Sci. USA 43, 293-295. (doi:10. 1073/pnas.43.3.293)
-
(1957)
Proc. Natl Acad. Sci. USA
, vol.43
, pp. 293-295
-
-
MacArthur, R.1
-
29
-
-
0003071920
-
On the relative abundance of species
-
(doi:10.1086/282106)
-
MacArthur, R. 1960 On the relative abundance of species. Am. Nat. 874, 25-36. (doi:10.1086/282106)
-
(1960)
Am. Nat.
, vol.874
, pp. 25-36
-
-
MacArthur, R.1
-
31
-
-
10344261568
-
Neutral and non-neutral macroecology
-
(doi:10.1016/ j.baae.2004.08.006)
-
Maurer, B. A. & McGill, B. J. 2004 Neutral and non-neutral macroecology. Basic Appl. Ecol. 5, 413-422. (doi:10.1016/ j.baae.2004.08.006)
-
(2004)
Basic Appl. Ecol.
, vol.5
, pp. 413-422
-
-
Maurer, B.A.1
McGill, B.J.2
-
32
-
-
0002970941
-
Patterns of species abundance and diversity
-
(ed. M. L. Cody & J. M. Diamond), Cambridge, MA: Harvard University Press
-
May, R. M. 1974 Patterns of species abundance and diversity. In Ecology and evolution of communities (ed. M. L. Cody & J. M. Diamond), pp. 81-120. Cambridge, MA: Harvard University Press.
-
(1974)
Ecology and Evolution of Communities
, pp. 81-120
-
-
May, R.M.1
-
33
-
-
0346433715
-
Analytic solution of Hubbell's model of local community dynamics
-
(doi:10.1016/j.tpb.2003.08. 001)
-
McKane, A. J., Alonso, D. & Sole, R. V. 2004 Analytic solution of Hubbell's model of local community dynamics. Theor. Popul. Biol. 65, 67-73. (doi:10.1016/j.tpb.2003.08. 001)
-
(2004)
Theor. Popul. Biol.
, vol.65
, pp. 67-73
-
-
McKane, A.J.1
Alonso, D.2
Sole, R.V.3
-
34
-
-
0027460328
-
Profiling of complex microbial-populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16s ribosomal-RNA
-
Muyzer, G., Dewaal, E. C. & Uitterlinden, A. G. 1993 Profiling of complex microbial-populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16s ribosomal-RNA. Appl. Environ. Microbiol. 59, 695-700.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
Dewaal, E.C.2
Uitterlinden, A.G.3
-
35
-
-
3042723492
-
Modeling bacterial species abundance from small community surveys
-
(doi:10.1007/s00248-003-1026-7)
-
Narang, R. & Dunbar, J. 2004 Modeling bacterial species abundance from small community surveys. Microb. Ecol. 47, 396-406. (doi:10.1007/s00248- 003-1026-7)
-
(2004)
Microb. Ecol.
, vol.47
, pp. 396-406
-
-
Narang, R.1
Dunbar, J.2
-
36
-
-
0347087550
-
Ecology - Clouded futures
-
(doi:10.1038/427107a)
-
Pounds, J. A. & Puschendorf, R. 2004 Ecology - clouded futures. Nature 427, 107-109. (doi:10.1038/427107a)
-
(2004)
Nature
, vol.427
, pp. 107-109
-
-
Pounds, J.A.1
Puschendorf, R.2
-
37
-
-
0029479731
-
Recombination and migration rates in natural populations of Bacillus subtilis and Bacillus mojavensis
-
(doi:10. 2307/2410433)
-
Roberts, M. S. & Cohan, F. M. 1995 Recombination and migration rates in natural populations of Bacillus subtilis and Bacillus mojavensis. Evolution 49, 1081-1094. (doi:10. 2307/2410433)
-
(1995)
Evolution
, vol.49
, pp. 1081-1094
-
-
Roberts, M.S.1
Cohan, F.M.2
-
38
-
-
10344228215
-
Status of the microbial census
-
(doi:10. 1128/MMBR.68.4.686-691.2004)
-
Schloss, P. D. & Handelsman, J. 2004 Status of the microbial census. Microbiol. Mol. Biol. Rev. 68, 686-691. (doi:10. 1128/MMBR.68.4.686-691.2004)
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 686-691
-
-
Schloss, P.D.1
Handelsman, J.2
-
39
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
(doi:10.1128/AEM.71.3. 1501-1506.2005)
-
Schloss, P. D. & Handelsman, J. 2005 Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71, 1501-1506. (doi:10.1128/AEM.71.3. 1501-1506.2005)
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
41
-
-
0024341852
-
A cladistic measure of gene flow inferred from the phylogenies of alleles
-
Slatkin, M. & Maddison, W. P. 1989 A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 123, 603-613.
-
(1989)
Genetics
, vol.123
, pp. 603-613
-
-
Slatkin, M.1
Maddison, W.P.2
-
42
-
-
33644843833
-
Quantifying the roles of immigration and chance in shaping prokaryote community structure
-
(doi:10.1111/j.1462-2920.2005.00956.x)
-
Sloan, W. T., Lunn, M., Woodcock, S., Head, I. M., Nee, S. & Curtis, T. P. 2006 Quantifying the roles of immigration and chance in shaping prokaryote community structure. Environ. Microbiol. 8, 732-740. (doi:10.1111/j.1462-2920. 2005.00956.x)
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 732-740
-
-
Sloan, W.T.1
Lunn, M.2
Woodcock, S.3
Head, I.M.4
Nee, S.5
Curtis, T.P.6
-
43
-
-
85020819747
-
Using environmental genomic data to identifying patterns in the structure of microbial communities
-
In press
-
Sloan, W. T., Woodcock, S., Head, I. M., Lunn, M. & Curtis, T. P. In press. Using environmental genomic data to identifying patterns in the structure of microbial communities. Microb. Ecol.
-
Microb. Ecol.
-
-
Sloan, W.T.1
Woodcock, S.2
Head, I.M.3
Lunn, M.4
Curtis, T.P.5
-
44
-
-
14544287770
-
Genotypic diversity within a natural coastal bacterioplankton population
-
(doi:10.1126/science.1106028)
-
Thompson, J. R., Pacocha, S., Pharino, C., Klepac-Ceraj, V., Hunt, D. E., Benoit, J., Sarma-Rupavtarm, R., Distel, D. L. & Polz, M. F. 2005 Genotypic diversity within a natural coastal bacterioplankton population. Science 307, 1311-1313. (doi:10.1126/science.1106028)
-
(2005)
Science
, vol.307
, pp. 1311-1313
-
-
Thompson, J.R.1
Pacocha, S.2
Pharino, C.3
Klepac-Ceraj, V.4
Hunt, D.E.5
Benoit, J.6
Sarma-Rupavtarm, R.7
Distel, D.L.8
Polz, M.F.9
-
45
-
-
0025215665
-
High diversity in DNA of soil bacteria
-
Torsvik, V., Goksoyr, J. & Daae, F. L. 1990 High diversity in DNA of soil bacteria. Appl. Environ. Microbiol. 56, 782-787.
-
(1990)
Appl. Environ. Microbiol.
, vol.56
, pp. 782-787
-
-
Torsvik, V.1
Goksoyr, J.2
Daae, F.L.3
-
46
-
-
2542492388
-
Analytical solution of a neutral model of biodiversity
-
(doi:10.1103/PhysRevE.68.061902)
-
Vallade, M. & Houchmandzadeh, B. 2003 Analytical solution of a neutral model of biodiversity. Phys. Rev. E. 68, 061902. (doi:10.1103/PhysRevE. 68.061902)
-
(2003)
Phys. Rev. E.
, vol.68
, pp. 061902
-
-
Vallade, M.1
Houchmandzadeh, B.2
-
47
-
-
0042865997
-
Neutral theory and relative species abundance in ecology
-
(doi:10.1038/nature01883)
-
Volkov, I., Banavar, J. R., Hubbell, S. P. & Maritan, A. 2003 Neutral theory and relative species abundance in ecology. Nature 424, 1035-1037. (doi:10.1038/nature01883)
-
(2003)
Nature
, vol.424
, pp. 1035-1037
-
-
Volkov, I.1
Banavar, J.R.2
Hubbell, S.P.3
Maritan, A.4
-
48
-
-
0036624935
-
Bacterial community composition and function in sewage treatment systems
-
Wagner, M. & Loy, A. 2002 Bacterial community composition and function in sewage treatment systems. Curr. Opin. Biotechnol. 13, 218-227.
-
(2002)
Curr. Opin. Biotechnol.
, vol.13
, pp. 218-227
-
-
Wagner, M.1
Loy, A.2
-
49
-
-
0042242559
-
Geographic barriers isolate endemic populations of hyperthermophilic archaea
-
(doi:10.1126/science.1086909)
-
Whitaker, R. J., Grogan, D. W. & Taylor, J. W. 2003 Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science 301, 976-978. (doi:10.1126/science.1086909)
-
(2003)
Science
, vol.301
, pp. 976-978
-
-
Whitaker, R.J.1
Grogan, D.W.2
Taylor, J.W.3
-
50
-
-
0032499758
-
Prokaryotes: The unseen majority
-
(doi:10.1073/pnas.95.12.6578)
-
Whitman, W. B., Coleman, D. C. & Wiebe, W. J. 1998 Prokaryotes: the unseen majority. Proc. Natl Acad. Sci. USA 95, 6578-6583. (doi:10.1073/pnas.95. 12.6578)
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 6578-6583
-
-
Whitman, W.B.1
Coleman, D.C.2
Wiebe, W.J.3
-
53
-
-
33745070555
-
Taxa-area relationships for microbes: The unsampled and the unseen
-
Woodcock, S., Curtis, T. P., Head, I. M., Lunn, M. & Sloan, W. T. 2006 Taxa-area relationships for microbes: the unsampled and the unseen. Ecol. Lett. 9, 805-812.
-
(2006)
Ecol. Lett.
, vol.9
, pp. 805-812
-
-
Woodcock, S.1
Curtis, T.P.2
Head, I.M.3
Lunn, M.4
Sloan, W.T.5
-
54
-
-
85020812843
-
-
In preparation
-
Woodcock, S., van der Gast, C. J., Bell, T., Lunn, M., Curtis, T. P., Head, I. M. & Sloan, W. T. In preparation. Neutral assembly of bacterial communities.
-
Neutral Assembly of Bacterial Communities
-
-
Woodcock, S.1
Van Der Gast, C.J.2
Bell, T.3
Lunn, M.4
Curtis, T.P.5
Head, I.M.6
Sloan, W.T.7
-
55
-
-
10744221283
-
Rapid screening for freshwater bacterial groups by using reverse line blot hybridization
-
(doi:10.1128/AEM. 69.10.5875-5883.2003)
-
Zwart, G. et al. 2003 Rapid screening for freshwater bacterial groups by using reverse line blot hybridization. Appl. Environ. Microbiol. 69, 5875-5883. (doi:10.1128/AEM. 69.10.5875-5883.2003)
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 5875-5883
-
-
Zwart, G.1
|