메뉴 건너뛰기




Volumn 8, Issue 1, 2011, Pages 1-8

Observation of miRNA gene expression in zebrafish embryos by in situ hybridization to MicroRNA primary transcripts

Author keywords

[No Author keywords available]

Indexed keywords

DIGOXIGENIN; MICRORNA; MIRN126 MICRORNA, ZEBRAFISH; MIRN140 MICRORNA, ZEBRAFISH; SPACER DNA; TRANSCRIPTION FACTOR SOX9; ZEBRAFISH PROTEIN;

EID: 79953277185     PISSN: 15458547     EISSN: None     Source Type: Journal    
DOI: 10.1089/zeb.2010.0680     Document Type: Article
Times cited : (35)

References (58)
  • 1
    • 29344467120 scopus 로고    scopus 로고
    • Physiology: A developmental timing microRNA and its target regulate life span in C. elegans
    • DOI 10.1126/science.1115596
    • Boehm M, Slack F. A developmental timing microRNA and its target regulate life span in C. elegans. Science 2005;310: 1954-1957. (Pubitemid 43005988)
    • (2005) Science , vol.310 , Issue.5756 , pp. 1954-1957
    • Boehm, M.1    Slack, F.2
  • 4
    • 33644900248 scopus 로고    scopus 로고
    • Increased expression of microRNA-155 in Epstein-Barr virus transformed lymphoblastoid cell lines
    • DOI 10.1002/gcc.20264
    • Jiang J, Lee EJ, Schmittgen TD. Increased expression of microRNA- 155 in Epstein-Barr virus transformed lymphoblastoid cell lines. Genes Chromosomes Cancer 2006;45: 103-106. (Pubitemid 46930866)
    • (2006) Genes Chromosomes and Cancer , vol.45 , Issue.1 , pp. 103-106
    • Jiang, J.1    Eun, J.L.2    Schmittgen, T.D.3
  • 5
    • 33745813856 scopus 로고    scopus 로고
    • The cartilage specific microRNA-140 targets histone deacetylase 4 in mouse cells
    • DOI 10.1016/j.febslet.2006.06.080, PII S0014579306007988
    • Tuddenham L, Wheeler G, Ntounia-Fousara S, Waters J, Hajihosseini MK, Clark I, et al. The cartilage specific micro- RNA-140 targets histone deacetylase 4 in mouse cells. FEBS Lett 2006;580:4214-4217. (Pubitemid 44037596)
    • (2006) FEBS Letters , vol.580 , Issue.17 , pp. 4214-4217
    • Tuddenham, L.1    Wheeler, G.2    Ntounia-Fousara, S.3    Waters, J.4    Hajihosseini, M.K.5    Clark, I.6    Dalmay, T.7
  • 6
    • 45549109558 scopus 로고    scopus 로고
    • MicroRNAs and RNA interference in zebrafish development
    • DOI 10.1089/zeb.2008.0528
    • Begemann G. MicroRNAs and RNA interference in zebrafish development. Zebrafish 2008;5:111-119. (Pubitemid 351860472)
    • (2008) Zebrafish , vol.5 , Issue.2 , pp. 111-119
    • Begemann, G.1
  • 10
    • 57849155254 scopus 로고    scopus 로고
    • MicroRNA- 128 inhibits glioma cells proliferation by targeting transcription factor E2F3a
    • Zhang Y, Chao T, Li R, Liu W, Chen Y, Yan X, et al. MicroRNA- 128 inhibits glioma cells proliferation by targeting transcription factor E2F3a. J Mol Med 2009;87:43-51.
    • (2009) J Mol Med , vol.87 , pp. 43-51
    • Zhang, Y.1    Chao, T.2    Li, R.3    Liu, W.4    Chen, Y.5    Yan, X.6
  • 11
    • 67349089523 scopus 로고    scopus 로고
    • MicroRNA- 21 protects from mesangial cell proliferation induced by diabetic nephropathy in db/db mice
    • Zhang Z, Peng H, Chen J, Chen X, Han F, Xu X, et al. MicroRNA- 21 protects from mesangial cell proliferation induced by diabetic nephropathy in db/db mice. FEBS Lett 2009;583:2009-2014.
    • (2009) FEBS Lett , vol.583 , pp. 2009-2014
    • Zhang, Z.1    Peng, H.2    Chen, J.3    Chen, X.4    Han, F.5    Xu, X.6
  • 12
    • 70350054798 scopus 로고    scopus 로고
    • Role of microRNA-155 at early stages of hepatocarci- nogenesis induced by choline-deficient and amino acid-defined diet in C57BL/6 mice
    • Wang B, Majumder S, Nuovo G, Kutay H, Volinia S, Patel T, et al. Role of microRNA-155 at early stages of hepatocarci- nogenesis induced by choline-deficient and amino acid-defined diet in C57BL/6 mice. Hepatology 2009;50: 1152-1161.
    • (2009) Hepatology , vol.50 , pp. 1152-1161
    • Wang, B.1    Majumder, S.2    Nuovo, G.3    Kutay, H.4    Volinia, S.5    Patel, T.6
  • 13
    • 27744506761 scopus 로고    scopus 로고
    • Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation
    • DOI 10.1016/j.cell.2005.10.020, PII S0092867405011074
    • Rand TA, Petersen S, Du F, Wang X. Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation. Cell 2005;123:621-629. (Pubitemid 41608465)
    • (2005) Cell , vol.123 , Issue.4 , pp. 621-629
    • Rand, T.A.1    Petersen, S.2    Du, F.3    Wang, X.4
  • 14
    • 8144225486 scopus 로고    scopus 로고
    • MicroRNA genes are transcribed by RNA polymerase II
    • DOI 10.1038/sj.emboj.7600385
    • Lee Y, Kim M, Han J, Yeom KH, Lee S, Baek SH, et al. MicroRNA genes are transcribed by RNA polymerase II. Embo J 2004;23:4051-4060. (Pubitemid 39472426)
    • (2004) EMBO Journal , vol.23 , Issue.20 , pp. 4051-4060
    • Lee, Y.1    Kim, M.2    Han, J.3    Yeom, K.-H.4    Lee, S.5    Baek, S.H.6    Kim, V.N.7
  • 15
    • 6344281172 scopus 로고    scopus 로고
    • Identification of mammalian microRNA host genes and transcription units
    • DOI 10.1101/gr.2722704
    • Rodriguez A, Griffiths-Jones S, Ashurst JL, Bradley A. Identification of mammalian microRNA host genes and transcription units. Genome Res 2004;14:1902-1910. (Pubitemid 39386503)
    • (2004) Genome Research , vol.14 , Issue.10 A , pp. 1902-1910
    • Rodriguez, A.1    Griffiths-Jones, S.2    Ashurst, J.L.3    Bradley, A.4
  • 16
    • 0037144546 scopus 로고    scopus 로고
    • A microRNA in a multipleturnover RNAi enzyme complex
    • Hutvagner G, Zamore PD. A microRNA in a multipleturnover RNAi enzyme complex. Science 2002;297:2056-2060.
    • (2002) Science , vol.297 , pp. 2056-2060
    • Hutvagner, G.1    Zamore, P.D.2
  • 19
    • 0242266618 scopus 로고    scopus 로고
    • The microRNA-producing enzyme Dicer1 is essential for zebrafish development
    • DOI 10.1038/ng1251
    • Wienholds E, Koudijs MJ, van Eeden FJ, Cuppen E, Plasterk RH. The microRNA-producing enzyme Dicer1 is essential for zebrafish development. Nat Genet 2003;35:217-218. (Pubitemid 37363173)
    • (2003) Nature Genetics , vol.35 , Issue.3 , pp. 217-218
    • Wienholds, E.1    Koudijs, M.J.2    Van Eeden, F.J.M.3    Cuppen, E.4    Plasterk, R.H.A.5
  • 23
    • 77950393298 scopus 로고    scopus 로고
    • Single nucleotide polymorphism associated with nonsyndromic cleft palate influences the processing of miR-140
    • Li L, Meng T, Jia Z, Zhu G, Shi B. Single nucleotide polymorphism associated with nonsyndromic cleft palate influences the processing of miR-140. Am J Med Genet A 2010;152A:856-862.
    • (2010) Am J Med Genet A , vol.152 , Issue.A , pp. 856-862
    • Li, L.1    Meng, T.2    Jia, Z.3    Zhu, G.4    Shi, B.5
  • 25
    • 26444603772 scopus 로고    scopus 로고
    • Two rounds of whole genome duplication in the ancestral vertebrate
    • Dehal P, Boore JL. Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol 2005;3:e314.
    • (2005) PLoS Biol , vol.3
    • Dehal, P.1    Boore, J.L.2
  • 27
    • 0037351989 scopus 로고    scopus 로고
    • Genome duplication, a trait shared by 22,000 species of ray-finned fish
    • DOI 10.1101/gr.640303
    • Taylor JS, Braasch I, Frickey T, Meyer A, Van de Peer Y. Genome duplication, a trait shared by 22000 species of rayfinned fish. Genome Res 2003;13:382-390. (Pubitemid 36395395)
    • (2003) Genome Research , vol.13 , Issue.3 , pp. 382-390
    • Taylor, J.S.1    Braasch, I.2    Frickey, T.3    Meyer, A.4    Van De Peer, Y.5
  • 29
    • 33749059160 scopus 로고    scopus 로고
    • MiRBase: The microRNA sequence database
    • Griffiths-Jones S. miRBase: The microRNA sequence database. Methods Mol Biol 2006;342:129-138.
    • (2006) Methods Mol Biol , vol.342 , pp. 129-138
    • Griffiths-Jones, S.1
  • 32
    • 33745294114 scopus 로고    scopus 로고
    • The zebrafish hoxDb cluster has been reduced to a single microRNA
    • DOI 10.1038/ng0606-601, PII N0606601
    • Woltering JM, Durston AJ. The zebrafish hoxDb cluster has been reduced to a single microRNA. Nat Genet 2006;38: 601-602. (Pubitemid 43932891)
    • (2006) Nature Genetics , vol.38 , Issue.6 , pp. 601-602
    • Woltering, J.M.1    Durston, A.J.2
  • 33
    • 65249179717 scopus 로고    scopus 로고
    • MicroRNAs and micromanaging the skeleton in disease, development and evolution
    • He X, Eberhart JK, Postlethwait JH. MicroRNAs and micromanaging the skeleton in disease, development and evolution. J Cell Mol Med 2009;13:606-618.
    • (2009) J Cell Mol Med , vol.13 , pp. 606-618
    • He, X.1    Eberhart, J.K.2    Postlethwait, J.H.3
  • 34
    • 0027453569 scopus 로고
    • Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail and no tail mutant embryos
    • Thisse C, Thisse B, Schilling TF, Postlethwait JH. Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail and no tail mutant embryos. Development 1993;119:1203-1215. (Pubitemid 23358587)
    • (1993) Development , vol.119 , Issue.4 , pp. 1203-1215
    • Thisse, C.1    Thisse, B.2    Schilling, T.F.3    Postlethwait, J.H.4
  • 35
    • 84953408590 scopus 로고
    • In situ hybridization to embryo whole mounts and tissue sections: MRNA detection and application to the developmental studies
    • Clark M (ed.). New York: Chapman and Hall
    • Jowett T, Mancera M, Amores A, Yan Y-L. In situ hybridization to embryo whole mounts and tissue sections: MRNA detection and application to the developmental studies. In: In situ Hybridization. Clark M (ed.). New York: Chapman and Hall, pp. 91-121, 1995.
    • (1995) Situ Hybridization , pp. 91-121
    • Jowett, T.1    Mancera, M.2    Amores, A.3    Yan, Y.-.L.4
  • 36
    • 11844277650 scopus 로고    scopus 로고
    • Subcellular distribution of small interfering RNA: Directed delivery through RNA polymerase III expression cassettes and localization by in situ hybridization
    • DOI 10.1016/S0076-6879(04)92008-3, PII S0076687904920083
    • Paul CP. Subcellular distribution of small interfering RNA: Directed delivery through RNA polymerase III expression cassettes and localization by in situ hybridization. Methods Enzymol 2005;392:125-145. (Pubitemid 40092512)
    • (2005) Methods in Enzymology , vol.392 , pp. 125-145
    • Paul, C.P.1
  • 38
    • 34548682763 scopus 로고    scopus 로고
    • Analysis of microRNA expression by in situ hybridization with RNA oligonucleotide probes
    • DOI 10.1016/j.ymeth.2007.04.008, PII S1046202307000989
    • Thompson RC, Deo M, Turner DL. Analysis of microRNA expression by in situ hybridization with RNA oligonucleotide probes. Methods 2007;43:153-161. (Pubitemid 47419362)
    • (2007) Methods , vol.43 , Issue.2 , pp. 153-161
    • Thompson, R.C.1    Deo, M.2    Turner, D.L.3
  • 39
    • 31344454565 scopus 로고    scopus 로고
    • In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes
    • DOI 10.1038/nmeth843, PII N843
    • Kloosterman WP, Wienholds E, de Bruijn E, Kauppinen S, Plasterk RH. In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes. Nat Methods 2006;3:27-29. (Pubitemid 43135345)
    • (2006) Nature Methods , vol.3 , Issue.1 , pp. 27-29
    • Kloosterman, W.P.1    Wienholds, E.2    De Bruijn, E.3    Kauppinen, S.4    Plasterk, R.H.A.5
  • 43
    • 55749104430 scopus 로고    scopus 로고
    • MicroRNA expression in chicken embryos
    • Hicks JA, Tembhurne P, Liu HC. MicroRNA expression in chicken embryos. Poult Sci 2008;87:2335-2343.
    • (2008) Poult Sci , vol.87 , pp. 2335-2343
    • Hicks, J.A.1    Tembhurne, P.2    Liu, H.C.3
  • 44
    • 0036730530 scopus 로고    scopus 로고
    • Single nucleotide polymorphism genotyping using short, fluorescently labeled locked nucleic acid (LNA) probes and fluorescence polarization detection
    • Simeonov A, Nikiforov TT. Single nucleotide polymorphism genotyping using short, fluorescently labeled locked nucleic acid (LNA) probes and fluorescence polarization detection. Nucleic Acids Res 2002;30:e91.
    • (2002) Nucleic Acids Res , vol.30
    • Simeonov, A.1    Nikiforov, T.T.2
  • 46
    • 0042121058 scopus 로고    scopus 로고
    • OligoDesign: Optimal design of LNA (locked nucleic acid) oligonucleotide capture probes for gene expression profiling
    • DOI 10.1093/nar/gkg580
    • Tolstrup N, Nielsen PS, Kolberg JG, Frankel AM, Vissing H, Kauppinen S. OligoDesign: Optimal design of LNA (locked nucleic acid) oligonucleotide capture probes for gene expression profiling. Nucleic Acids Res 2003;31:3758-3762. (Pubitemid 37442240)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3758-3762
    • Tolstrup, N.1    Nielsen, P.S.2    Kolberg, J.G.3    Frankel, A.M.4    Vissing, H.5    Kauppinen, S.6
  • 47
    • 2342520656 scopus 로고    scopus 로고
    • Locked nucleic acid (LNA) single nucleotide polymorphism (SNP) genotype analysis and validation using real-time PCR
    • Johnson MP, Haupt LM, Griffiths LR. Locked nucleic acid (LNA) single nucleotide polymorphism (SNP) genotype analysis and validation using real-time PCR. Nucleic Acids Res 2004;32:e55.
    • (2004) Nucleic Acids Res , vol.32
    • Johnson, M.P.1    Haupt, L.M.2    Griffiths, L.R.3
  • 49
    • 34248648455 scopus 로고    scopus 로고
    • Intronic microRNA: Discovery and biological implications
    • DOI 10.1089/dna.2006.0558
    • Li SC, Tang P, Lin WC. Intronic microRNA: Discovery and biological implications. DNA Cell Biol 2007;26:195-207. (Pubitemid 46776604)
    • (2007) DNA and Cell Biology , vol.26 , Issue.4 , pp. 195-207
    • Li, S.-C.1    Tang, P.2    Lin, W.-C.3
  • 52
    • 0031887992 scopus 로고    scopus 로고
    • Zebrafish hox genes: Genomic organization and modified colinear expression patterns in the trunk
    • Prince VE, Joly L, Ekker M, Ho RK. Zebrafish hox genes: Genomic organization and modified colinear expression patterns in the trunk. Development 1998;125:407-420. (Pubitemid 28102649)
    • (1998) Development , vol.125 , Issue.3 , pp. 407-420
    • Prince, V.E.1    Joly, L.2    Ekker, M.3    Ho, R.K.4
  • 53
    • 0037406116 scopus 로고    scopus 로고
    • A quantitative analysis of intron effects on mammalian gene expression
    • DOI 10.1261/rna.5250403
    • Nott A, Meislin SH, Moore MJ. A quantitative analysis of intron effects on mammalian gene expression. RNA 2003; 9:607-617. (Pubitemid 36505458)
    • (2003) RNA , vol.9 , Issue.5 , pp. 607-617
    • Nott, A.1    Meislin, S.H.2    Moore, M.J.3
  • 54
    • 77950546627 scopus 로고    scopus 로고
    • Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects
    • Lutter D, Marr C, Krumsiek J, Lang EW, Theis FJ. Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects. BMC Genomics 2010;11:224.
    • (2010) BMC Genomics , vol.11 , pp. 224
    • Lutter, D.1    Marr, C.2    Krumsiek, J.3    Lang, E.W.4    Theis, F.J.5
  • 57
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force A, Lynch M, Pickett FB, Amores A, Yan YL, Postlethwait J. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 1999;151:1531-1545. (Pubitemid 29177561)
    • (1999) Genetics , vol.151 , Issue.4 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.-L.5    Postlethwait, J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.