-
1
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena,M., Shalon,D., Davis,R.W. and Brown,P.O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
2
-
-
10544256600
-
Expression monitoring by hybridisation to high-density oligonucleotide arrays
-
Lockhart,D.J., Dong,H., Byrne,M.C., Follettie,M.T., Gallo,M.V., Chee,M.S., Mittmann,M., Wang,C., Kobayashi,M., Horton,H. and Brown,E.L. (1996) Expression monitoring by hybridisation to high-density oligonucleotide arrays. Nat. Biotechnol., 14, 1675-1680.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.L.11
-
3
-
-
0029748326
-
Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes
-
Schena,M., Shalon,D., Heller,R., Chai,A., Brown,P.O. and Davis,R.W. (1996) Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc. Natl Acad. Sci. USA, 93, 10614-10619.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 10614-10619
-
-
Schena, M.1
Shalon, D.2
Heller, R.3
Chai, A.4
Brown, P.O.5
Davis, R.W.6
-
4
-
-
0029812283
-
A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization
-
Shalon,D., Smith,S.J. and Brown,P.O. (1996) A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res., 6, 639-645.
-
(1996)
Genome Res.
, vol.6
, pp. 639-645
-
-
Shalon, D.1
Smith, S.J.2
Brown, P.O.3
-
5
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi,J.L., Iyer,V.R. and Brown,P.O. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, 278, 680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
6
-
-
0033031437
-
DNA arrays for analysis of gene expression
-
Eisen,M.B. and Brown,P.O. (1999) DNA arrays for analysis of gene expression. Methods Enzymol., 303, 179-205.
-
(1999)
Methods Enzymol.
, vol.303
, pp. 179-205
-
-
Eisen, M.B.1
Brown, P.O.2
-
7
-
-
84984933234
-
High density synthetic oligonucleotide arrays
-
Lipshutz,R.J., Fodor,S.P., Gingeras,T.R., Lockhart,D.J. (1999) High density synthetic oligonucleotide arrays. Nature Genet., 21, 20-24.
-
(1999)
Nature Genet.
, vol.21
, pp. 20-24
-
-
Lipshutz, R.J.1
Fodor, S.P.2
Gingeras, T.R.3
Lockhart, D.J.4
-
8
-
-
0036900945
-
Medical applications of microarray technologies: A regulatory science perspective
-
Petricoin,E.F.III, Hackett,J.L., Lesko,L.J., Puri,R.K., Gutman,S.I., Chumakov,K., Woodcock,J., Feigal,D.W.Jr, Zoon,K.C. and Sistare,F.D. (2002) Medical applications of microarray technologies: a regulatory science perspective. Nature Genet., 32, 474-479.
-
(2002)
Nature Genet.
, vol.32
, pp. 474-479
-
-
Petricoin III, E.F.1
Hackett, J.L.2
Lesko, L.J.3
Puri, R.K.4
Gutman, S.I.5
Chumakov, K.6
Woodcock, J.7
Feigal Jr., D.W.8
Zoon, K.C.9
Sistare, F.D.10
-
9
-
-
0346942394
-
Monitoring expression of genes involved in drug metabolism and toxicology using DNA microarrays
-
Gerhold,D., Lu,M., Xu,J., Austin,C., Caskey,C.T. and Rushmore,T. (2001) Monitoring expression of genes involved in drug metabolism and toxicology using DNA microarrays. Physiol. Genomics, 5, 161-170.
-
(2001)
Physiol. Genomics
, vol.5
, pp. 161-170
-
-
Gerhold, D.1
Lu, M.2
Xu, J.3
Austin, C.4
Caskey, C.T.5
Rushmore, T.6
-
10
-
-
17944366528
-
Clustering of hepatotoxins based on mechanism of toxicity using gene expression profiles
-
Waring,J.F., Jolly,R.A., Ciurlionis,R., Lum,P.Y., Praestgaard,J.T., Morfitt,D.C., Buratto,B., Roberts,C., Schadt,E. and Ulrich,R.G. (2001) Clustering of hepatotoxins based on mechanism of toxicity using gene expression profiles. Toxicol. Appl. Pharmacol., 175, 28-42.
-
(2001)
Toxicol. Appl. Pharmacol.
, vol.175
, pp. 28-42
-
-
Waring, J.F.1
Jolly, R.A.2
Ciurlionis, R.3
Lum, P.Y.4
Praestgaard, J.T.5
Morfitt, D.C.6
Buratto, B.7
Roberts, C.8
Schadt, E.9
Ulrich, R.G.10
-
11
-
-
0034669668
-
Assessment of the sensitivity and specificity of oligonucleotide (50mer) Microarrays
-
Kane,M.D., Jatkoe,T.A., Stumpf,C.R., Lu,J., Thomas,J.D. and Madore,S.J. (2000) Assessment of the sensitivity and specificity of oligonucleotide (50mer) Microarrays. Nucleic Acids Res., 28, 4552-4557.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4552-4557
-
-
Kane, M.D.1
Jatkoe, T.A.2
Stumpf, C.R.3
Lu, J.4
Thomas, J.D.5
Madore, S.J.6
-
12
-
-
0037102247
-
Use of hybridisation kinetics for differentiating specific from non-specific binding to oligonucleotide microarrays
-
Dai,H., Meyer,M., Stepaniants,S., Ziman,M. and Stoughton,R. (2002) Use of hybridisation kinetics for differentiating specific from non-specific binding to oligonucleotide microarrays. Nucleic Acids Res., 30, e86.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. e86
-
-
Dai, H.1
Meyer, M.2
Stepaniants, S.3
Ziman, M.4
Stoughton, R.5
-
13
-
-
0036545952
-
An assessment of Motorola CodeLink microarray performance for gene expression profiling applications
-
Ramakrishnan,R., Dorris,D., Lublinsky,A., Nguyen,A., Domanus,M., Prokhorova,A., Gieser,L., Touma,E., Lockner,R., Tata,M. et al. (2002) An assessment of Motorola CodeLink microarray performance for gene expression profiling applications. Nucleic Acids Res., 30, e30.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. e30
-
-
Ramakrishnan, R.1
Dorris, D.2
Lublinsky, A.3
Nguyen, A.4
Domanus, M.5
Prokhorova, A.6
Gieser, L.7
Touma, E.8
Lockner, R.9
Tata, M.10
-
14
-
-
0036615598
-
Optimization of oligonucleotide-based DNA microarrays
-
Relogio,A., Schwager,C., Richter,A., Ansorge,W. and Valcarcel,J. (2002) Optimization of oligonucleotide-based DNA microarrays. Nucleic Acids Res., 30, e51.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. e51
-
-
Relogio, A.1
Schwager, C.2
Richter, A.3
Ansorge, W.4
Valcarcel, J.5
-
15
-
-
18544410036
-
Assessing unmodified 70-mer oligonucleotide probe performance on glass-slide microarrays
-
Wang,H-Y., Malek,R.L., Kwitek,A.E., Greene,A.S., Luu,T.V., Behbahani,B., Frank,B., Quackenbush,J. and Lee,N.H. (2003) Assessing unmodified 70-mer oligonucleotide probe performance on glass-slide microarrays. Genome Biol., 4, R5.
-
(2003)
Genome Biol.
, vol.4
, pp. R5
-
-
Wang, H.-Y.1
Malek, R.L.2
Kwitek, A.E.3
Greene, A.S.4
Luu, T.V.5
Behbahani, B.6
Frank, B.7
Quackenbush, J.8
Lee, N.H.9
-
16
-
-
0032473890
-
LNA (locked nucleic acids): Synthesis of the adenine, cytosine, guanine, 5-methylcytosine, thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition
-
Koshkin,A., Singh,S.K., Nielsen,P., Rajwanshi,V.K., Kumar,R., Meldgaard,M., Olsen,C.E., and Wengel,J. (1998) LNA (locked nucleic acids): synthesis of the adenine, cytosine, guanine, 5-methylcytosine, thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition. Tetrahedron, 54, 3607-3630.
-
(1998)
Tetrahedron
, vol.54
, pp. 3607-3630
-
-
Koshkin, A.1
Singh, S.K.2
Nielsen, P.3
Rajwanshi, V.K.4
Kumar, R.5
Meldgaard, M.6
Olsen, C.E.7
Wengel, J.8
-
17
-
-
0343065617
-
LNA (locked nucleic acids): Synthesis and high-affinity nucleic acid recognition
-
Singh,S.K., Nielsen,P., Koshkin,A. and Wengel,J. (1998) LNA (locked nucleic acids): Synthesis and high-affinity nucleic acid recognition. Chem. Commun., 4, 455-456.
-
(1998)
Chem. Commun.
, vol.4
, pp. 455-456
-
-
Singh, S.K.1
Nielsen, P.2
Koshkin, A.3
Wengel, J.4
-
18
-
-
3343020355
-
LNA microarrays in genomics
-
in press
-
Kauppinen,S., Nielsen,P.S., Mouritzen,P., Nielsen,A.T., Vissing,H., Mller,S. and Ramsing,N.B. (2003) LNA microarrays in genomics, PharmaGenomics, in press.
-
(2003)
PharmaGenomics
-
-
Kauppinen, S.1
Nielsen, P.S.2
Mouritzen, P.3
Nielsen, A.T.4
Vissing, H.5
Mller, S.6
Ramsing, N.B.7
-
19
-
-
0345239243
-
SNP genotyping using LNA (Locked Nucleic Acid)
-
Mouritzen,P., Nielsen,A.T., Pfundheller,H.M., Choleva,Y., Kongsbak,L. and Mller,S. (2003) SNP genotyping using LNA (Locked Nucleic Acid). Expert Rev. Mol. Diagn., 3, 89-100.
-
(2003)
Expert. Rev. Mol. Diagn.
, vol.3
, pp. 89-100
-
-
Mouritzen, P.1
Nielsen, A.T.2
Pfundheller, H.M.3
Choleva, Y.4
Kongsbak, L.5
Mller, S.6
-
20
-
-
0012951839
-
Oliz, a suite of Perl scripts that assist in the design of microarrays using 50mer oligonucleotides from the 3� untranslated region
-
Chen,H., and Sharp,B.M. (2002) Oliz, a suite of Perl scripts that assist in the design of microarrays using 50mer oligonucleotides from the 3� untranslated region. BMC Bioinformatics, 3, 27-34.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 27-34
-
-
Chen, H.1
Sharp, B.M.2
-
21
-
-
0036208669
-
OligoArray: Genomescale oligonucleotide design for microarrays
-
Rouillard,J.M., Herbert,C.J. and Zuker,M. (2002) OligoArray: genomescale oligonucleotide design for microarrays. Bioinformatics, 18, 486-487.
-
(2002)
Bioinformatics
, vol.18
, pp. 486-487
-
-
Rouillard, J.M.1
Herbert, C.J.2
Zuker, M.3
-
22
-
-
0035190608
-
Selection of optimal DNA oligos for gene expression arrays
-
Li,F. and Stormo,G.D. (2001) Selection of optimal DNA oligos for gene expression arrays. Bioinformatics, 17, 1067-1076.
-
(2001)
Bioinformatics
, vol.17
, pp. 1067-1076
-
-
Li, F.1
Stormo, G.D.2
-
25
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson,W.R. and Lipman,D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA, 85, 2444-2448.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
26
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
27
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
SantaLucia,J.Jr (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci. USA, 95, 1460-1465.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1460-1465
-
-
SantaLucia Jr., J.1
-
28
-
-
0030875847
-
Thermodynamics and NMR of internal G:T mismatches in DNA
-
Allawi,H.T. and SantaLucia,J.Jr (1997) Thermodynamics and NMR of internal G:T mismatches in DNA. Biochemistry, 36, 10581-10594.
-
(1997)
Biochemistry
, vol.36
, pp. 10581-10594
-
-
Allawi, H.T.1
SantaLucia Jr., J.2
-
29
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith,T.F., Waterman,M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
30
-
-
0032561794
-
LNA (Locked Nucleic Acid): An RNA mimic forming exceedingly stable LNA:LNA duplexes
-
Koshkin,A.A., Nielsen,P., Meldgaard,M., Rajwanshi,V.K., Singh,S.K. and Wengel.J. (1998) LNA (Locked Nucleic Acid): an RNA mimic forming exceedingly stable LNA:LNA duplexes. J. Am. Chem. Soc., 120, 13252-13253.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 13252-13253
-
-
Koshkin, A.A.1
Nielsen, P.2
Meldgaard, M.3
Rajwanshi, V.K.4
Singh, S.K.5
Wengel, J.6
-
31
-
-
0025077218
-
Speeding up the dynamic algorithm for planar RNA folding
-
Nussinov,R., Shapiro,B., Le,S. and Maizel,J.V. (1990) Speeding up the dynamic algorithm for planar RNA folding. Math. Biosci., 100, 33-47.
-
(1990)
Math. Biosci.
, vol.100
, pp. 33-47
-
-
Nussinov, R.1
Shapiro, B.2
Le, S.3
Maizel, J.V.4
-
32
-
-
0002287019
-
Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
-
Barciszewski,J. and Clark,B.F.C. (eds), Kluwer Academic Publishers, Dordrecht, The Netherlands
-
Zuker,M., Mathews,D.H. and Turner,D.H. (1999) Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide. In Barciszewski,J. and Clark,B.F.C. (eds), RNA Biochemistry and Biotechnology, NATO ASI Series, Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 11-43.
-
(1999)
RNA Biochemistry and Biotechnology, NATO ASI Series
, pp. 11-43
-
-
Zuker, M.1
Mathews, D.H.2
Turner, D.H.3
-
33
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews,D.H., Sabina,J., Zuker,M. and Turner,D.H. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol., 288, 911-940.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
34
-
-
0036201645
-
Genotyping of the apolipoprotein B R3500Q mutation using immobilized locked nucleic acid capture probes
-
Jacobsen,N., Fenger,M., Bentzen,J. Rasmussen,S.L., Jakobsen,M.H., Fenstholt,J. and Skouv,J. (2002) Genotyping of the apolipoprotein B R3500Q mutation using immobilized locked nucleic acid capture probes. Clin. Chem., 48, 657-660.
-
(2002)
Clin. Chem.
, vol.48
, pp. 657-660
-
-
Jacobsen, N.1
Fenger, M.2
Bentzen, J.3
Rasmussen, S.L.4
Jakobsen, M.H.5
Fenstholt, J.6
Skouv, J.7
-
35
-
-
0036778333
-
LNA-enhanced detection of single nucleotide polymorphism in the apolipoprotein E
-
Jacobsen,N., Bentzen,J., Meldgaard,M., Jakobsen,M.H., Fenger,M., Kauppinen,S. and Skouv,J. (2002) LNA-enhanced detection of single nucleotide polymorphism in the apolipoprotein E. Nucleic Acids Res., 30, e100.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. e100
-
-
Jacobsen, N.1
Bentzen, J.2
Meldgaard, M.3
Jakobsen, M.H.4
Fenger, M.5
Kauppinen, S.6
Skouv, J.7
-
36
-
-
0036110292
-
Identification of a novel cis-regulatory element involved in the heat shock response in Caenorhabditis elegans using microarray gene expression and computational methods
-
GuhaThakurta,D., Palomar,L., Stormo,G.D., Tedesco,P., Johnson,T.E., Walker,D.W., Lithgow,G., Kim,S. and Link,C.D. (2002) Identification of a novel cis-regulatory element involved in the heat shock response in Caenorhabditis elegans using microarray gene expression and computational methods. Genome Res., 12, 701-712.
-
(2002)
Genome Res.
, vol.12
, pp. 701-712
-
-
GuhaThakurta, D.1
Palomar, L.2
Stormo, G.D.3
Tedesco, P.4
Johnson, T.E.5
Walker, D.W.6
Lithgow, G.7
Kim, S.8
Link, C.D.9
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