Protein-surface interaction maps for ion-exchange chromatography

Langmuir

Volumn 27, Issue 7, 2011, Pages 3561-3568

  Freed, Alexander S ^a,b   Cramer, Steven M ^a,b  

^a RENSSELAER POLYTECHNIC INSTITUTE   (United States)

^b RENSSELAER POLYTECHNIC INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING BEHAVIORS; COARSE-GRAINED; FUTURE METHODS; GENERAL TRENDS; INTERACTION POINTS; ION-EXCHANGE CHROMATOGRAPHY; MAP APPROACH; PROTEIN SURFACE; PROTEIN VARIANTS; PROTEIN-SURFACE INTERACTIONS; RAPID DETERMINATION;

BINDING ENERGY; CHROMATOGRAPHY; ENZYMES; HYDROLASES; ION EXCHANGE;

BEHAVIORAL RESEARCH;

LYSOZYME; PROTEIN;

ARTICLE; CHEMISTRY; GENETICS; ION EXCHANGE CHROMATOGRAPHY; METHODOLOGY; MUTATION; PROTEIN BINDING; THEORETICAL MODEL;

CHROMATOGRAPHY, ION EXCHANGE; MODELS, THEORETICAL; MURAMIDASE; MUTATION; PROTEIN BINDING; PROTEINS;

EID: 79953249543     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la104641z     Document Type: Article

References (27)

1. Lavenus, S.; Ricquier, J. C.; Louarn, G.; Layrolle, P. Cell interaction with nanopatterned surface of implants Nanomedicine 2010, 5 (6) 937-947
2. Raynor, J. E.; Capadona, J. R.; Collard, D. M.; Petrie, T. A.; Garcia, A. J. Polymer brushes and self-assembled monolayers: Versatile platforms to control cell adhesion to biomaterials (Review) Biointerphases 2009, 4 (2) FA3-FA16
3. Bilitewski, U. Protein-sensing assay formats and devices Anal. Chim. Acta 2006, 568 (1-2) 232-247 (Pubitemid 43729748)
4. Yigzaw, Y.; Hinckley, P.; Hewig, A.; Vedantham, G. Ion exchange chromatography of proteins and clearance of aggregates Curr. Pharm. Biotechnol. 2009, 10 (4) 421-426
5. Kopaciewicz, W.; Rounds, M. A.; Fausnaugh, J.; Regnier, F. E. Retention model for high-performance ion-exchange chromatography J. Chromatogr. 1983, 266, 3-21
6. 5-Structural and thermodynamic considerations J. Chromatogr., A 1994, 684 (1) 55-63 (Pubitemid 24327823)
7. Yao, Y.; Lenhoff, A. M. Electrostatic contributions to protein retention in ion-exchange chromatography. 1. Cytochrome c variants Anal. Chem. 2004, 76 (22) 6743-6752 (Pubitemid 39507266)
8. Chicz, R. M.; Regnier, F. E. Single amino-acid contributions to protein retention in cation-exchange chromatography-Resolution of genetically engineered subtilisin variants Anal. Chem. 1989, 61 (18) 2059-2066 (Pubitemid 19232281)
9. Dismer, F.; Hubbuch, J. A novel approach to characterize the binding orientation of lysozyme on ion-exchange resins J. Chromatogr., A 2007, 1149 (2) 312-320 (Pubitemid 46627656)
10. Chung, W. K.; Evans, S. T.; Freed, A. S.; Keba, J. J.; Baer, Z. C.; Rege, K.; Cramer, S. M. Utilization of lysozyme charge ladders to examine the effects of protein surface charge distribution on binding affinity in ion exchange systems Langmuir 2010, 26 (2) 759-768
11. Chung, W. K.; Hou, Y.; Freed, A.; Holstein, M.; Makhatadze, G. I.; Cramer, S. M. Investigation of protein binding affinity and preferred orientations in ion exchange systems using a homologous protein library Biotechnol. Bioeng. 2009, 102 (3) 869-881
12. Roth, C. M.; Lenhoff, A. M. Electrostatic and van der Waals contributions to protein adsorption: Computation of equilibrium constants Langmuir 1993, 9 (4) 962-972
13. Hallgren, E.; Kalman, F.; Farnan, D.; Horvath, C.; Stahlberg, J. Protein retention in ion-exchange chromatography: Effect of net charge and charge distribution J. Chromatogr., A 2000, 877 (1-2) 13-24 (Pubitemid 30227442)
14. Jonsson, B.; Stahlberg, J. The electrostatic interaction between a charged sphere and an oppositely charged planar surface and its application to protein adsorption Colloids Surf., B 1999, 14 (1-4) 67-75 (Pubitemid 29364276)
15. Bowen, W. R.; Sharif, A. O. Long-range electrostatic attraction between like-charge spheres in a charged pore Nature 1998, 393 (6686) 663-665 (Pubitemid 28289649)
16. Roth, C. M.; Sader, J. E.; Lenhoff, A. M. Electrostatic contribution to the energy and entropy of protein adsorption J. Colloid Interface Sci. 1998, 203 (1) 218-221 (Pubitemid 28384370)
17. Dismer, F.; Hubbuch, J. In silico prediction of protein binding using molecular dynamic simulations: A future tool for accelerated process development J. Biosci. Bioeng. 2009, 108, S60-S60
18. Tan, C.; Yang, L.; Luo, R. How well does Poisson-Boltzmann implicit solvent agree with explicit solvent? A quantitative analysis J. Phys. Chem. B 2006, 110 (37) 18680-18687 (Pubitemid 44547378)
19. Baker, N. A.; Sept, D.; Joseph, S.; Holst, M. J.; McCammon, J. A. Electrostatics of nanosystems: Application to microtubules and the ribosome Proc. Natl. Acad. Sci. U.S.A. 2001, 98 (18) 10037-10041 (Pubitemid 32802969)
20. Holst, M.; Saied, F. Multigrid solution of the Poisson-Boltzmann equation J. Comput. Chem. 1993, 14 (1) 105-113
21. Holst, M. J.; Saied, F. Numerical solution of the nonlinear Poisson-Boltzmann equation-Developing more robust and efficient methods J. Comput. Chem. 1995, 16 (3) 337-364
22. Bank, R. E.; Holst, M. A new paradigm for parallel adaptive meshing algorithms SIAM J. Sci. Comput. 2000, 22 (4) 1411-1443
23. Humphrey, W.; Dalke, A.; Schulten, K. VMD: Visual molecular dynamics J. Mol. Graphics 1996, 14 (1) 33-38 (Pubitemid 26152973)
24. Donald, L. E.; McCammon, J. A. Brownian dynamics with hydrodynamic interactions J. Chem. Phys. 1978, 69 (4) 1352-1360
25. Elcock, A. H. Molecular simulations of diffusion and association in multimacromolecular systems Methods Enzymol. 2004, 383, 166-198 (Pubitemid 38401791)
26. McGuffee, S. R.; Elcock, A. H. Atomically detailed simulations of concentrated protein solutions: The effects of salt, pH, point mutations, and protein concentration in simulations of 1000-molecule systems J. Am. Chem. Soc. 2006, 128 (37) 12098-12110 (Pubitemid 44413841)
27. Gabdoulline, R. R.; Wade, R. C. Effective charges for macromolecules in solvent J. Phys. Chem. 1996, 100 (9) 3868-3878 (Pubitemid 126788408)