메뉴 건너뛰기




Volumn 10, Issue 2, 2011, Pages

Accurate quantification of more than 4000 mouse tissue proteins reveals minimal proteome changes during aging

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME; DISULFIDE; LYSINE; PROTEIN;

EID: 79953231670     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.M110.004523     Document Type: Article
Times cited : (121)

References (40)
  • 1
    • 0034626735 scopus 로고    scopus 로고
    • Oxidants, oxidative stress and the biology of ageing
    • Finkel, T., and Holbrook, N. J. (2000) Oxidants, oxidative stress and the biology of ageing. Nature 408, 239-247
    • (2000) Nature , vol.408 , pp. 239-247
    • Finkel, T.1    Holbrook, N.J.2
  • 2
    • 77950265945 scopus 로고    scopus 로고
    • Linking functional decline of telomeres, mitochondria and stem cells during ageing
    • Sahin, E., and Depinho, R. A. (2010) Linking functional decline of telomeres, mitochondria and stem cells during ageing. Nature 464, 520-528
    • (2010) Nature , vol.464 , pp. 520-528
    • Sahin, E.1    Depinho, R.A.2
  • 3
    • 0030699271 scopus 로고    scopus 로고
    • Rapid accumulation of genome rearrangements in liver but not in brain of old mice
    • Dollé, M. E., Giese, H., Hopkins, C. L., Martus, H. J., Hausdorff, J. M., and Vijg, J. (1997) Rapid accumulation of genome rearrangements in liver but not in brain of old mice. Nat. Genet. 17, 431-434
    • (1997) Nat. Genet. , vol.17 , pp. 431-434
    • Dollé, M.E.1    Giese, H.2    Hopkins, C.L.3    Martus, H.J.4    Hausdorff, J.M.5    Vijg, J.6
  • 4
    • 0034682523 scopus 로고    scopus 로고
    • Distinct spectra of somatic mutations accumulated with age in mouse heart and small intestine
    • Dollé, M. E., Snyder, W. K., Gossen, J. A., Lohman, P. H., and Vijg, J. (2000) Distinct spectra of somatic mutations accumulated with age in mouse heart and small intestine. Proc. Natl. Acad. Sci. U.S.A. 97, 8403-8408
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 8403-8408
    • Dollé, M.E.1    Snyder, W.K.2    Gossen, J.A.3    Lohman, P.H.4    Vijg, J.5
  • 6
    • 0035852759 scopus 로고    scopus 로고
    • The effects of aging on gene expression in the hypothalamus and cortex of mice
    • Jiang, C. H., Tsien, J. Z., Schultz, P. G., and Hu, Y. (2001) The effects of aging on gene expression in the hypothalamus and cortex of mice. Proc. Natl. Acad. Sci. U.S.A. 98, 1930-1934
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 1930-1934
    • Jiang, C.H.1    Tsien, J.Z.2    Schultz, P.G.3    Hu, Y.4
  • 7
    • 0000847978 scopus 로고    scopus 로고
    • Gene-expression profile of the ageing brain in mice
    • Lee, C. K., Weindruch, R., and Prolla, T. A. (2000) Gene-expression profile of the ageing brain in mice. Nat. Genet. 25, 294-297
    • (2000) Nat. Genet. , vol.25 , pp. 294-297
    • Lee, C.K.1    Weindruch, R.2    Prolla, T.A.3
  • 10
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • DOI 10.1038/nature01511
    • Aebersold, R., and Mann, M. (2003) Mass spectrometry-based proteomics. Nature 422, 198-207 (Pubitemid 36362757)
    • (2003) Nature , vol.422 , Issue.6928 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 11
  • 15
    • 77952956167 scopus 로고    scopus 로고
    • Decoding signalling networks by mass spectrometry-based proteomics
    • Choudhary, C., and Mann, M. (2010) Decoding signalling networks by mass spectrometry-based proteomics. Nat. Rev. Mol. Cell Biol. 11, 427-439
    • (2010) Nat. Rev. Mol. Cell Biol. , vol.11 , pp. 427-439
    • Choudhary, C.1    Mann, M.2
  • 16
    • 70350247863 scopus 로고    scopus 로고
    • Quantitative proteomics in biological research
    • Wilm, M. (2009) Quantitative proteomics in biological research. Proteomics 9, 4590-4605
    • (2009) Proteomics , vol.9 , pp. 4590-4605
    • Wilm, M.1
  • 17
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F., Gelb, M. H., and Aebersold, R. (1999) Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17, 994-999
    • (1999) Nat. Biotechnol. , vol.17 , pp. 994-999
    • Gygi, S.P.1    Rist, B.2    Gerber, S.A.3    Turecek, F.4    Gelb, M.H.5    Aebersold, R.6
  • 19
    • 76649083593 scopus 로고    scopus 로고
    • Quantitative proteomics by metabolic labeling of model organisms
    • Gouw, J. W., Krijgsveld, J., and Heck, A. J. (2010) Quantitative proteomics by metabolic labeling of model organisms. Mol. Cell Proteomics 9, 11-24
    • (2010) Mol. Cell Proteomics , vol.9 , pp. 11-24
    • Gouw, J.W.1    Krijgsveld, J.2    Heck, A.J.3
  • 20
    • 48849097164 scopus 로고    scopus 로고
    • Quantitative proteomics as a new piece of the systems biology puzzle
    • Bachi, A., and Bonaldi, T. (2008) Quantitative proteomics as a new piece of the systems biology puzzle. J. Proteomics 71, 357-367
    • (2008) J. Proteomics , vol.71 , pp. 357-367
    • Bachi, A.1    Bonaldi, T.2
  • 21
    • 4444346217 scopus 로고    scopus 로고
    • Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis
    • Wu, C. C., MacCoss, M. J., Howell, K. E., Matthews, D. E., and Yates, J. R., 3rd (2004) Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis. Anal. Chem. 76, 4951-4959
    • (2004) Anal. Chem. , vol.76 , pp. 4951-4959
    • Wu, C.C.1    MacCoss, M.J.2    Howell, K.E.3    Matthews, D.E.4    Yates III, J.R.5
  • 22
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., and Mann, M. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell Proteomics 1, 376-386
    • (2002) Mol. Cell Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6    Mann, M.7
  • 23
    • 47549099572 scopus 로고    scopus 로고
    • SILAC Mouse for Quantitative Proteomics Uncovers Kindlin-3 as an Essential Factor for Red Blood Cell Function
    • DOI 10.1016/j.cell.2008.05.033, PII S0092867408006958
    • Krüger, M., Moser, M., Ussar, S., Thievessen, I., Luber, C. A., Forner, F., Schmidt, S., Zanivan, S., Fässler, R., and Mann, M. (2008) SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function. Cell 134, 353-364 (Pubitemid 352010327)
    • (2008) Cell , vol.134 , Issue.2 , pp. 353-364
    • Kruger, M.1    Moser, M.2    Ussar, S.3    Thievessen, I.4    Luber, C.A.5    Forner, F.6    Schmidt, S.7    Zanivan, S.8    Fassler, R.9    Mann, M.10
  • 25
    • 53049087690 scopus 로고    scopus 로고
    • Differential protein expression during aging in ventricular myocardium of Fischer 344 x Brown Norway hybrid rats
    • Richardson, M. R., Lai, X., Mason, S. B., Miller, S. J., and Witzmann, F. A. (2008) Differential protein expression during aging in ventricular myocardium of Fischer 344 x Brown Norway hybrid rats. Exp. Gerontol. 43, 909-918
    • (2008) Exp. Gerontol. , vol.43 , pp. 909-918
    • Richardson, M.R.1    Lai, X.2    Mason, S.B.3    Miller, S.J.4    Witzmann, F.A.5
  • 26
    • 70350020470 scopus 로고    scopus 로고
    • Quantification of Protein Expression Changes in the Aging Left Ventricle of Rattus norvegicus
    • Grant, J. E., Bradshaw, A. D., Schwacke, J. H., Baicu, C. F., Zile, M. R., and Schey, K. L. (2009) Quantification of Protein Expression Changes in the Aging Left Ventricle of Rattus norvegicus. J.Proteome Res. 8, 4252-4263
    • (2009) J.Proteome Res. , vol.8 , pp. 4252-4263
    • Grant, J.E.1    Bradshaw, A.D.2    Schwacke, J.H.3    Baicu, C.F.4    Zile, M.R.5    Schey, K.L.6
  • 28
    • 67349266694 scopus 로고    scopus 로고
    • Universal sample preparation method for proteome analysis
    • Wiśniewski, J. R., Zougman, A., Nagaraj, N., and Mann, M. (2009) Universal sample preparation method for proteome analysis. Nat. Methods 6, 359-362
    • (2009) Nat. Methods , vol.6 , pp. 359-362
    • Wiśniewski, J.R.1    Zougman, A.2    Nagaraj, N.3    Mann, M.4
  • 29
    • 71549117585 scopus 로고    scopus 로고
    • Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome
    • Wiśniewski, J. R., Zougman, A., and Mann, M. (2009) Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome. J. Proteome Res. 8, 5674-5678
    • (2009) J. Proteome Res. , vol.8 , pp. 5674-5678
    • Wiśniewski, J.R.1    Zougman, A.2    Mann, M.3
  • 30
    • 3042815334 scopus 로고    scopus 로고
    • Trypsin cleaves exclusively C-terminal to arginine and lysine residues
    • DOI 10.1074/mcp.T400003-MCP200
    • Olsen, J. V., Ong, S. E., and Mann, M. (2004) Trypsin cleaves exclusively C-terminal to arginine and lysine residues. Mol.Cellular Proteomics 3, 608-614 (Pubitemid 38878520)
    • (2004) Molecular and Cellular Proteomics , vol.3 , Issue.6 , pp. 608-614
    • Olsen, J.V.1    Ong, S.-E.2    Mann, M.3
  • 31
    • 33645704767 scopus 로고    scopus 로고
    • Quantitative proteomic comparison of rat mitochondria from muscle, heart, and liver
    • Forner, F., Foster, L. J., Campanaro, S., Valle, G., and Mann, M. (2006) Quantitative proteomic comparison of rat mitochondria from muscle, heart, and liver. Mol. Cell Proteomics 5, 608-619
    • (2006) Mol. Cell Proteomics , vol.5 , pp. 608-619
    • Forner, F.1    Foster, L.J.2    Campanaro, S.3    Valle, G.4    Mann, M.5
  • 32
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • Cox, J., and Mann, M. (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 26, 1367-1372
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 33
    • 33847630405 scopus 로고    scopus 로고
    • Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
    • DOI 10.1038/nmeth1019, PII NMETH1019
    • Elias, J. E., and Gygi, S. P. (2007) Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 4, 207-214 (Pubitemid 46358868)
    • (2007) Nature Methods , vol.4 , Issue.3 , pp. 207-214
    • Elias, J.E.1    Gygi, S.P.2
  • 35
    • 0036169031 scopus 로고    scopus 로고
    • Genesis: Cluster analysis of microarray data
    • Sturn, A., Quackenbush, J., and Trajanoski, Z. (2002) Genesis: cluster analysis of microarray data. Bioinformatics 18, 207-208 (Pubitemid 34145055)
    • (2002) Bioinformatics , vol.18 , Issue.1 , pp. 207-208
    • Sturn, A.1    Quackenbush, J.2    Trajanoski, Z.3
  • 36
    • 33646234749 scopus 로고    scopus 로고
    • A simple method for assessing sample sizes in microarray experiments
    • Tibshirani, R. (2006) A simple method for assessing sample sizes in microarray experiments. Bmc Bioinformatics 7:106
    • (2006) Bmc Bioinformatics , vol.7 , pp. 106
    • Tibshirani, R.1
  • 38
    • 63049110388 scopus 로고    scopus 로고
    • Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type-specific functions
    • Pan, C., Kumar, C., Bohl, S., Klingmueller, U., and Mann, M. (2009) Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type-specific functions. Mol. Cell Proteomics 8, 443-450
    • (2009) Mol. Cell Proteomics , vol.8 , pp. 443-450
    • Pan, C.1    Kumar, C.2    Bohl, S.3    Klingmueller, U.4    Mann, M.5
  • 39
    • 52649157711 scopus 로고    scopus 로고
    • Combined use of RNAi and quantitative proteomics to study gene function in Drosophila
    • Bonaldi, T., Straub, T., Cox, J., Kumar, C., Becker, P. B., and Mann, M. (2008) Combined use of RNAi and quantitative proteomics to study gene function in Drosophila. Mol. Cell 31, 762-772
    • (2008) Mol. Cell , vol.31 , pp. 762-772
    • Bonaldi, T.1    Straub, T.2    Cox, J.3    Kumar, C.4    Becker, P.B.5    Mann, M.6
  • 40
    • 77952226764 scopus 로고    scopus 로고
    • Super-SILAC mix for quantitative proteomics of human tumor tissue
    • Geiger, T., Cox, J., Ostasiewicz, P., Wisniewski, J. R., and Mann, M. (2010) Super-SILAC mix for quantitative proteomics of human tumor tissue. Nat. Methods 7, 383-385
    • (2010) Nat. Methods , vol.7 , pp. 383-385
    • Geiger, T.1    Cox, J.2    Ostasiewicz, P.3    Wisniewski, J.R.4    Mann, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.