메뉴 건너뛰기




Volumn , Issue , 2010, Pages 3367-3372

Parameter identification of biological networks using extended kalman filtering and χ2 criteria

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL SYSTEMS; EXTENDED KALMAN FILTERS; GENE EXPRESSION; LEAST SQUARES APPROXIMATIONS;

EID: 79953155269     PISSN: 07431546     EISSN: 25762370     Source Type: Conference Proceeding    
DOI: 10.1109/CDC.2010.5717460     Document Type: Conference Paper
Times cited : (7)

References (31)
  • 1
    • 33745780500 scopus 로고    scopus 로고
    • Network motifs: Structure does not determine function
    • P. J. Ingram, M. P. H. Stumpf, and J. Stark, "Network motifs: structure does not determine function," BMC Genomics, vol. 7, no. 1, p. 108, 2006.
    • (2006) BMC Genomics , vol.7 , Issue.1 , pp. 108
    • Ingram, P.J.1    Stumpf, M.P.H.2    Stark, J.3
  • 2
    • 33646167129 scopus 로고    scopus 로고
    • Plasticity of the cis-regulatory input function of a gene
    • A. E. Mayo, Y. Setty, S. Shavit, A. Zaslaver, and U. Alon, "Plasticity of the cis-regulatory input function of a gene," PLoS Biol, vol. 4, no. 4, p. e45, 2006.
    • (2006) PLoS Biol , vol.4 , Issue.4
    • Mayo, A.E.1    Setty, Y.2    Shavit, S.3    Zaslaver, A.4    Alon, U.5
  • 3
    • 0032406131 scopus 로고    scopus 로고
    • Non-linear optimization of biochemical pathways: Applications to metabolic engineering and parameter estimation
    • P. Mendes and D. Kell, "Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation," Bioinformatics, vol. 14, no. 10, pp. 869-883, 1998.
    • (1998) Bioinformatics , vol.14 , Issue.10 , pp. 869-883
    • Mendes, P.1    Kell, D.2
  • 4
    • 26444479778 scopus 로고
    • Optimization by simulated annealing
    • S. Kirkpatrick, C. D. Gelatt, and M. P. Vecchi, "Optimization by simulated annealing," Science, vol. 220, no. 4598, pp. 671-680, 1983.
    • (1983) Science , vol.220 , Issue.4598 , pp. 671-680
    • Kirkpatrick, S.1    Gelatt, C.D.2    Vecchi, M.P.3
  • 5
    • 0028446271 scopus 로고
    • Genetic algorithms: A survey
    • Jun
    • M. Srinivas and L. Patnaik, "Genetic algorithms: a survey," Computer, vol. 27, pp. 17-26, Jun 1994.
    • (1994) Computer , vol.27 , pp. 17-26
    • Srinivas, M.1    Patnaik, L.2
  • 6
    • 57049089078 scopus 로고    scopus 로고
    • Parameter estimation and determinability analysis applied to drosophila gap gene circuits
    • M. Ashyraliyev, J. Jaeger, and J. Blom, "Parameter estimation and determinability analysis applied to drosophila gap gene circuits," BMC Syst Biol, vol. 2, no. 1, p. 83, 2008.
    • (2008) BMC Syst Biol , vol.2 , Issue.1 , pp. 83
    • Ashyraliyev, M.1    Jaeger, J.2    Blom, J.3
  • 7
    • 0242574982 scopus 로고    scopus 로고
    • Parameter estimation in biochemical pathways: A comparison of global optimization methods
    • C. G. Moles, P. Mendes, and J. R. Banga, "Parameter estimation in biochemical pathways: a comparison of global optimization methods," Genome Res, vol. 13, pp. 2467-2474, 2003.
    • (2003) Genome Res , vol.13 , pp. 2467-2474
    • Moles, C.G.1    Mendes, P.2    Banga, J.R.3
  • 8
    • 34250658998 scopus 로고    scopus 로고
    • Bayesian methods in bioinformatics and computational systems biology
    • D. J. Wilkinson, "Bayesian methods in bioinformatics and computational systems biology," Brief Bioinform, vol. 8, no. 2, pp. 109-116, 2007.
    • (2007) Brief Bioinform , vol.8 , Issue.2 , pp. 109-116
    • Wilkinson, D.J.1
  • 9
    • 0033083733 scopus 로고    scopus 로고
    • It's a noisy business! genetic regulation at the nanomolar scale
    • H. H. McAdams and A. Arkin, "It's a noisy business! genetic regulation at the nanomolar scale," Trends in Genetics, vol. 15, no. 2, pp. 65-69, 1999.
    • (1999) Trends in Genetics , vol.15 , Issue.2 , pp. 65-69
    • McAdams, H.H.1    Arkin, A.2
  • 10
    • 58149142997 scopus 로고    scopus 로고
    • Approximate bayesian computation scheme for parameter inference and model selection in dynamical systems
    • T. Toni, D. Welch, N. Strelkowa, A. Ipsen, and M. P. H. Stumpf, "Approximate bayesian computation scheme for parameter inference and model selection in dynamical systems," Journal of The Royal Society Interface, vol. 6, no. 31, pp. 187-202, 2009.
    • (2009) Journal of the Royal Society Interface , vol.6 , Issue.31 , pp. 187-202
    • Toni, T.1    Welch, D.2    Strelkowa, N.3    Ipsen, A.4    Stumpf, M.P.H.5
  • 11
    • 0346205399 scopus 로고    scopus 로고
    • Markov chain monte carlo method and its application
    • S. P. Brooks, "Markov chain monte carlo method and its application," The Statistician, vol. 47, no. 1, pp. 69-100, 1998.
    • (1998) The Statistician , vol.47 , Issue.1 , pp. 69-100
    • Brooks, S.P.1
  • 12
    • 42749109054 scopus 로고    scopus 로고
    • Statistical mechanical approaches to models with many poorly known parameters
    • Aug
    • K. S. Brown and J. P. Sethna, "Statistical mechanical approaches to models with many poorly known parameters," Phys Rev E, vol. 68, p. 021904, Aug 2003.
    • (2003) Phys Rev E , vol.68 , pp. 021904
    • Brown, K.S.1    Sethna, J.P.2
  • 13
    • 0037168597 scopus 로고    scopus 로고
    • An ensemble method for identifying regulatory circuits with special reference to the qa gene cluster of neurospora crassa
    • D. Battogtokh, D. K. Asch, M. E. Case, J. Arnold, and H.-B. Schottler, "An ensemble method for identifying regulatory circuits with special reference to the qa gene cluster of neurospora crassa," PNAS, vol. 99, no. 26, pp. 16904-16909, 2002.
    • (2002) PNAS , vol.99 , Issue.26 , pp. 16904-16909
    • Battogtokh, D.1    Asch, D.K.2    Case, M.E.3    Arnold, J.4    Schottler, H.-B.5
  • 14
    • 33846939958 scopus 로고    scopus 로고
    • Sequential monte carlo without likelihoods
    • S. A. Sisson, Y. Fan, and M. M. Tanaka, "Sequential monte carlo without likelihoods," PNAS, vol. 104, no. 6, pp. 1760-1765, 2007.
    • (2007) PNAS , vol.104 , Issue.6 , pp. 1760-1765
    • Sisson, S.A.1    Fan, Y.2    Tanaka, M.M.3
  • 16
    • 33750690698 scopus 로고    scopus 로고
    • Model selection and mixed-effects modeling of hiv infection dynamics
    • D. M. Bortz and P. W. Nelson, "Model selection and mixed-effects modeling of hiv infection dynamics," B Math Biol, vol. 68, no. 8, pp. 2005-2025, 2006.
    • (2006) B Math Biol , vol.68 , Issue.8 , pp. 2005-2025
    • Bortz, D.M.1    Nelson, P.W.2
  • 17
    • 33748759305 scopus 로고    scopus 로고
    • Hybrid extended luenberger-asymptotic observer for bioprocess state estimation
    • X. Hulhoven, A. V. Wouwer, and P. Bogaerts, "Hybrid extended luenberger-asymptotic observer for bioprocess state estimation," Chem Eng Sci, vol. 61, no. 21, pp. 7151-7160, 2006.
    • (2006) Chem Eng Sci , vol.61 , Issue.21 , pp. 7151-7160
    • Hulhoven, X.1    Wouwer, A.V.2    Bogaerts, P.3
  • 18
    • 36549012683 scopus 로고    scopus 로고
    • Estimating parameters and hidden variables in non-linear state-space models based on odes for biological networks inference
    • M. Quach, N. Brunel, and F d'Alche Buc, "Estimating parameters and hidden variables in non-linear state-space models based on odes for biological networks inference," Bioinformatics, vol. 23, no. 23, pp. 3209-3216, 2007.
    • (2007) Bioinformatics , vol.23 , Issue.23 , pp. 3209-3216
    • Quach, M.1    Brunel, N.2    D'Alche Buc, F.3
  • 19
    • 56649104989 scopus 로고    scopus 로고
    • Extended kalman filter for estimation of parameters in nonlinear state-space models of biochemical networks
    • X. Sun, L. Jin, and M. Xiong, "Extended kalman filter for estimation of parameters in nonlinear state-space models of biochemical networks," PLoS ONE, vol. 3, no. 11, p. e3758, 2008.
    • (2008) PLoS ONE , vol.3 , Issue.11
    • Sun, X.1    Jin, L.2    Xiong, M.3
  • 20
    • 68649105450 scopus 로고    scopus 로고
    • An extended kalman filtering approach to modelling nonlinear dynamic gene regulatory networks via short gene expression time series
    • Z. Wang, X. Liu, Y Liu, J. Liang, and V. Vinciotti, "An extended kalman filtering approach to modelling nonlinear dynamic gene regulatory networks via short gene expression time series," IEEE ACM T Comput Bi, vol. 6, no. 3, pp. 410-419, 2009.
    • (2009) IEEE ACM T Comput Bi , vol.6 , Issue.3 , pp. 410-419
    • Wang, Z.1    Liu, X.2    Liu, Y.3    Liang, J.4    Vinciotti, V.5
  • 25
    • 77950841799 scopus 로고    scopus 로고
    • Parameter estimation and model selection in computational biology
    • G. Lillacci and M. Khammash, "Parameter estimation and model selection in computational biology," PLoS Comp Biol, vol. 6, no. 3, p. e1000696, 2010.
    • (2010) PLoS Comp Biol , vol.6 , Issue.3
    • Lillacci, G.1    Khammash, M.2
  • 26
    • 21644483999 scopus 로고
    • Maximum likelihood estimates of linear dynamic systems
    • H. E. Rauch, C. T. Striebel, and F Tung, "Maximum likelihood estimates of linear dynamic systems," AIAA J, vol. 3, pp. 1445-1450, 1965.
    • (1965) AIAA J , vol.3 , pp. 1445-1450
    • Rauch, H.E.1    Striebel, C.T.2    Tung, F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.