메뉴 건너뛰기




Volumn 5, Issue 3-4, 2011, Pages 179-188

Proteome and transcriptome profiles of a Her2/Neu-driven mouse model of breast cancer

Author keywords

Breast cancer; Her2; Mouse; Proteome; Transcriptome

Indexed keywords

EPIDERMAL GROWTH FACTOR RECEPTOR 2; PROTEOME; TRANSCRIPTOME;

EID: 79953081641     PISSN: 18628346     EISSN: 18628354     Source Type: Journal    
DOI: 10.1002/prca.201000037     Document Type: Article
Times cited : (13)

References (35)
  • 1
    • 52049120831 scopus 로고    scopus 로고
    • ErbB2 transgenic mice: a tool for investigation of the immune prevention and treatment of mammary carcinomas
    • Chapter 20, Unit 20.9.1-20.9-10.
    • Quaglino, E., Mastini, C., Forni, G., Cavallo, F., ErbB2 transgenic mice: a tool for investigation of the immune prevention and treatment of mammary carcinomas. Curr. Protoc. Immunol. 2008, Chapter 20, Unit 20.9.1-20.9-10.
    • (2008) Curr. Protoc. Immunol.
    • Quaglino, E.1    Mastini, C.2    Forni, G.3    Cavallo, F.4
  • 2
    • 50849091292 scopus 로고    scopus 로고
    • Mouse models for BRCA1 associated tumorigenesis: from fundamental insights to preclinical utility
    • Bouwman, P., Jonkers, J., Mouse models for BRCA1 associated tumorigenesis: from fundamental insights to preclinical utility. Cell Cycle 2008, 7, 2647-2653.
    • (2008) Cell Cycle , vol.7 , pp. 2647-2653
    • Bouwman, P.1    Jonkers, J.2
  • 3
    • 34548217651 scopus 로고    scopus 로고
    • Maximizing mouse cancer models
    • Frese, K. K., Tuveson, D. A., Maximizing mouse cancer models. Nat. Rev. Cancer 2007, 7, 645-658.
    • (2007) Nat. Rev. Cancer , vol.7 , pp. 645-658
    • Frese, K.K.1    Tuveson, D.A.2
  • 4
    • 34548268026 scopus 로고    scopus 로고
    • Modelling breast cancer: one size does not fit all
    • Vargo-Gogola, T., Rosen, J. M., Modelling breast cancer: one size does not fit all. Nat. Rev. Cancer 2007, 7, 659-672.
    • (2007) Nat. Rev. Cancer , vol.7 , pp. 659-672
    • Vargo-Gogola, T.1    Rosen, J.M.2
  • 5
    • 35648931589 scopus 로고    scopus 로고
    • Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer
    • Whiteaker, J. R., Zhang, H., Zhao, L., Wang, P. et al., Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer. J. Proteome Res. 2007, 6, 3962-3975.
    • (2007) J. Proteome Res. , vol.6 , pp. 3962-3975
    • Whiteaker, J.R.1    Zhang, H.2    Zhao, L.3    Wang, P.4
  • 6
    • 19044370434 scopus 로고    scopus 로고
    • Conditional activation of Neu in the mammary epithelium of transgenic mice results in reversible pulmonary metastasis
    • Moody, S. E., Sarkisian, C. J., Hahn, K. T., Gunther, E. J. et al., Conditional activation of Neu in the mammary epithelium of transgenic mice results in reversible pulmonary metastasis. Cancer Cell 2002, 2, 451-461.
    • (2002) Cancer Cell , vol.2 , pp. 451-461
    • Moody, S.E.1    Sarkisian, C.J.2    Hahn, K.T.3    Gunther, E.J.4
  • 7
    • 67650382229 scopus 로고    scopus 로고
    • Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles
    • Rodriguez, H., Snyder, M., Uhlen, M., Andrews, P. et al., Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles. J. Proteome Res. 2009, 8, 3689-3692.
    • (2009) J. Proteome Res. , vol.8 , pp. 3689-3692
    • Rodriguez, H.1    Snyder, M.2    Uhlen, M.3    Andrews, P.4
  • 9
    • 34047209848 scopus 로고    scopus 로고
    • Clinical proteomics: a need to define the field and to begin to set adequate standards
    • Mischak, H., Apweiler, R., Banks, R. E., Conaway, M. et al., Clinical proteomics: a need to define the field and to begin to set adequate standards. Proteomics Clin. Appl. 2007, 1, 148-156.
    • (2007) Proteomics Clin. Appl. , vol.1 , pp. 148-156
    • Mischak, H.1    Apweiler, R.2    Banks, R.E.3    Conaway, M.4
  • 10
    • 65549131495 scopus 로고    scopus 로고
    • Automated diagnosis of LC-MS/MS performance
    • Xu, H., Freitas, M. A., Automated diagnosis of LC-MS/MS performance. Bioinformatics 2009, 25, 1341-1343.
    • (2009) Bioinformatics , vol.25 , pp. 1341-1343
    • Xu, H.1    Freitas, M.A.2
  • 11
    • 70549102769 scopus 로고    scopus 로고
    • Halogenated peptides as internal standards (H-PINS): introduction of an MS-based internal standard set for liquid chromatography-mass spectrometry
    • Mirzaei, H., Brusniak, M. Y., Mueller, L. N., Letarte, S. et al., Halogenated peptides as internal standards (H-PINS): introduction of an MS-based internal standard set for liquid chromatography-mass spectrometry. Mol. Cell. Proteomics 2009, 8, 1934-1946.
    • (2009) Mol. Cell. Proteomics , vol.8 , pp. 1934-1946
    • Mirzaei, H.1    Brusniak, M.Y.2    Mueller, L.N.3    Letarte, S.4
  • 12
    • 76149142168 scopus 로고    scopus 로고
    • Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry
    • Tabb, D. L., Vega-Montoto, L., Rudnick, P. A., Variyath, A. M. et al., Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry. J. Proteome Res. 2010, 9, 761-776.
    • (2010) J. Proteome Res. , vol.9 , pp. 761-776
    • Tabb, D.L.1    Vega-Montoto, L.2    Rudnick, P.A.3    Variyath, A.M.4
  • 13
    • 76649122499 scopus 로고    scopus 로고
    • Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance
    • Paulovich, A. G., Billheimer, D., Ham, A. J., Vega-Montoto, L. et al., Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance. Mol. Cell. Proteomics 2010, 9, 242-254.
    • (2010) Mol. Cell. Proteomics , vol.9 , pp. 242-254
    • Paulovich, A.G.1    Billheimer, D.2    Ham, A.J.3    Vega-Montoto, L.4
  • 14
    • 76749122411 scopus 로고    scopus 로고
    • Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses
    • Rudnick, P. A., Clauser, K. R., Kilpatrick, L. E., Tchekhovskoi, D. V. et al., Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses. Mol. Cell. Proteomics 2010, 9, 225-241.
    • (2010) Mol. Cell. Proteomics , vol.9 , pp. 225-241
    • Rudnick, P.A.1    Clauser, K.R.2    Kilpatrick, L.E.3    Tchekhovskoi, D.V.4
  • 15
    • 1842528125 scopus 로고    scopus 로고
    • Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13C-labeled peptide standards
    • Kuhn, E., Wu, J., Karl, J., Liao, H. et al., Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13C-labeled peptide standards. Proteomics 2004, 4, 1175-1186.
    • (2004) Proteomics , vol.4 , pp. 1175-1186
    • Kuhn, E.1    Wu, J.2    Karl, J.3    Liao, H.4
  • 16
    • 71049187147 scopus 로고    scopus 로고
    • Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution
    • Keshishian, H., Addona, T., Burgess, M., Mani, D. R. et al., Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution. Mol. Cell. Proteomics 2009, 8, 2339-2349.
    • (2009) Mol. Cell. Proteomics , vol.8 , pp. 2339-2349
    • Keshishian, H.1    Addona, T.2    Burgess, M.3    Mani, D.R.4
  • 18
    • 4544282394 scopus 로고    scopus 로고
    • High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology
    • Liu, T., Qian, W. J., Strittmatter, E. F., Camp, D. G., 2nd et al., High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology. Anal. Chem. 2004, 76, 5345-5353.
    • (2004) Anal. Chem. , vol.76 , pp. 5345-5353
    • Liu, T.1    Qian, W.J.2    Strittmatter, E.F.3    Camp 2nd, D.G.4
  • 19
    • 20144388856 scopus 로고    scopus 로고
    • Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: the human mammary epithelial cell proteome
    • Liu, T., Qian, W. J., Chen, W. N., Jacobs, J. M. et al., Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: the human mammary epithelial cell proteome. Proteomics 2005, 5, 1263-1273.
    • (2005) Proteomics , vol.5 , pp. 1263-1273
    • Liu, T.1    Qian, W.J.2    Chen, W.N.3    Jacobs, J.M.4
  • 20
    • 33747180294 scopus 로고    scopus 로고
    • A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS
    • Bellew, M., Coram, M., Fitzgibbon, M., Igra, M. et al., A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS. Bioinformatics 2006, 22, 1902-1909.
    • (2006) Bioinformatics , vol.22 , pp. 1902-1909
    • Bellew, M.1    Coram, M.2    Fitzgibbon, M.3    Igra, M.4
  • 21
    • 41149134523 scopus 로고    scopus 로고
    • Fully automated four-column capillary LC-MS system for maximizing throughput in proteomic analyses
    • Livesay, E. A., Tang, K., Taylor, B. K., Buschbach, M. A. et al., Fully automated four-column capillary LC-MS system for maximizing throughput in proteomic analyses. Anal. Chem. 2008, 80, 294-302.
    • (2008) Anal. Chem. , vol.80 , pp. 294-302
    • Livesay, E.A.1    Tang, K.2    Taylor, B.K.3    Buschbach, M.A.4
  • 22
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu, H., Sadygov, R. G., Yates, J. R., 3rd, A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 2004, 76, 4193-4201.
    • (2004) Anal. Chem. , vol.76 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates 3rd, J.R.3
  • 23
    • 26844559000 scopus 로고    scopus 로고
    • Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
    • Ishihama, Y., Oda, Y., Tabata, T., Sato, T. et al., Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol. Cell. Proteomics 2005, 4, 1265-1272.
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 1265-1272
    • Ishihama, Y.1    Oda, Y.2    Tabata, T.3    Sato, T.4
  • 24
    • 0141955057 scopus 로고    scopus 로고
    • A method for reducing the time required to match protein sequences with tandem mass spectra
    • Craig, R., Beavis, R. C., A method for reducing the time required to match protein sequences with tandem mass spectra. Rapid Commun. Mass Spectrom. 2003, 17, 2310-2316.
    • (2003) Rapid Commun. Mass Spectrom. , vol.17 , pp. 2310-2316
    • Craig, R.1    Beavis, R.C.2
  • 25
    • 3142702204 scopus 로고    scopus 로고
    • TANDEM: matching proteins with tandem mass spectra
    • Craig, R., Beavis, R. C., TANDEM: matching proteins with tandem mass spectra. Bioinformatics 2004, 20, 1466-1467.
    • (2004) Bioinformatics , vol.20 , pp. 1466-1467
    • Craig, R.1    Beavis, R.C.2
  • 26
    • 33750979860 scopus 로고    scopus 로고
    • General framework for developing and evaluating database scoring algorithms using the TANDEM search engine
    • MacLean, B., Eng, J. K., Beavis, R. C., McIntosh, M., General framework for developing and evaluating database scoring algorithms using the TANDEM search engine. Bioinformatics 2006, 22, 2830-2832.
    • (2006) Bioinformatics , vol.22 , pp. 2830-2832
    • MacLean, B.1    Eng, J.K.2    Beavis, R.C.3    McIntosh, M.4
  • 27
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller, A., Nesvizhskii, A. I., Kolker, E., Aebersold, R., Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 2002, 74, 5383-5392.
    • (2002) Anal. Chem. , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 28
    • 30744438115 scopus 로고    scopus 로고
    • Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments
    • Rauch, A., Bellew, M., Eng, J., Fitzgibbon, M. et al., Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments. J. Proteome Res. 2006, 5, 112-121.
    • (2006) J. Proteome Res. , vol.5 , pp. 112-121
    • Rauch, A.1    Bellew, M.2    Eng, J.3    Fitzgibbon, M.4
  • 29
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii, A. I., Keller, A., Kolker, E., Aebersold, R., A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 2003, 75, 4646-4658.
    • (2003) Anal. Chem. , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 30
    • 53049108033 scopus 로고    scopus 로고
    • Characterization of the mouse pancreatic islet proteome and comparative analysis with other mouse tissues
    • Petyuk, V. A., Qian, W. J., Hinault, C., Gritsenko, M. A. et al., Characterization of the mouse pancreatic islet proteome and comparative analysis with other mouse tissues. J. Proteome Res. 2008, 7, 3114-3126.
    • (2008) J. Proteome Res. , vol.7 , pp. 3114-3126
    • Petyuk, V.A.1    Qian, W.J.2    Hinault, C.3    Gritsenko, M.A.4
  • 31
    • 77949865344 scopus 로고    scopus 로고
    • Region-specific protein abundance changes in the brain of MPTP-induced Parkinson's disease mouse model
    • Zhang, X., Zhou, J. Y., Chin, M. H., Schepmoes, A. A. et al., Region-specific protein abundance changes in the brain of MPTP-induced Parkinson's disease mouse model. J. Proteome Res. 2010, 9, 1496-1509.
    • (2010) J. Proteome Res. , vol.9 , pp. 1496-1509
    • Zhang, X.1    Zhou, J.Y.2    Chin, M.H.3    Schepmoes, A.A.4
  • 32
    • 33746602208 scopus 로고    scopus 로고
    • A molecular correlate to the Gleason grading system for prostate adenocarcinoma
    • True, L., Coleman, I., Hawley, S., Huang, C. Y. et al., A molecular correlate to the Gleason grading system for prostate adenocarcinoma. Proc. Natl. Acad. Sci. USA 2006, 103, 10991-10996.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 10991-10996
    • True, L.1    Coleman, I.2    Hawley, S.3    Huang, C.Y.4
  • 33
    • 48749122914 scopus 로고    scopus 로고
    • Circulating microRNAs as stable blood-based markers for cancer detection
    • Mitchell, P. S., Parkin, R. K., Kroh, E. M., Fritz, B. R. et al., Circulating microRNAs as stable blood-based markers for cancer detection. Proc. Natl. Acad. Sci. USA 2008, 105, 10513-10518.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 10513-10518
    • Mitchell, P.S.1    Parkin, R.K.2    Kroh, E.M.3    Fritz, B.R.4
  • 34
    • 77951718967 scopus 로고    scopus 로고
    • Proteomic characterization of novel alternative splice variant proteins in human epidermal growth factor receptor 2/neu-induced breast cancers
    • Menon, R., Omenn, G. S., Proteomic characterization of novel alternative splice variant proteins in human epidermal growth factor receptor 2/neu-induced breast cancers. Cancer Res. 2010, 70, 3440-3449.
    • (2010) Cancer Res. , vol.70 , pp. 3440-3449
    • Menon, R.1    Omenn, G.S.2
  • 35
    • 65449150181 scopus 로고    scopus 로고
    • MRM screening/biomarker discovery with linear ion trap MS: a library of human cancer-specific peptides
    • Yang, X., Lazar, I. M., MRM screening/biomarker discovery with linear ion trap MS: a library of human cancer-specific peptides. BMC Cancer 2009, 9, 96.
    • (2009) BMC Cancer , vol.9 , pp. 96
    • Yang, X.1    Lazar, I.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.