-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
2442686628
-
A novel partial modification at 2501 in Escherichia coli 23S ribosomal RNA
-
Andersen, T.E., Porse, B.T., and Kirpekar, F. (2004) A novel partial modification at 2501 in Escherichia coli 23S ribosomal RNA. RNA 10: 907-913.
-
(2004)
RNA
, vol.10
, pp. 907-913
-
-
Andersen, T.E.1
Porse, B.T.2
Kirpekar, F.3
-
3
-
-
0023127236
-
Distribution of erythromycin esterase and rRNA methylase genes in members of the family Enterobacteriaceae highly resistant to erythromycin
-
Arthur, M., Andremont, A., and Courvalin, P. (1987) Distribution of erythromycin esterase and rRNA methylase genes in members of the family Enterobacteriaceae highly resistant to erythromycin. Antimicrob Agents Chemother 31: 404-409.
-
(1987)
Antimicrob Agents Chemother
, vol.31
, pp. 404-409
-
-
Arthur, M.1
Andremont, A.2
Courvalin, P.3
-
4
-
-
0025326764
-
Cloning of a lincosamide resistance determinant from Streptomyces caelestis, the producer of celesticetin, and characterization of the resistance mechanism
-
Calcutt, M.J., and Cundliffe, E. (1990) Cloning of a lincosamide resistance determinant from Streptomyces caelestis, the producer of celesticetin, and characterization of the resistance mechanism. J Bacteriol 172: 4710-4714.
-
(1990)
J Bacteriol
, vol.172
, pp. 4710-4714
-
-
Calcutt, M.J.1
Cundliffe, E.2
-
5
-
-
2942571539
-
The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone, J.J., Subramanian, S., Schnare, M.N., Collett, J.R., D'Souza, L.M., Du, Y., etal. (2002) The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 3: 2.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
-
6
-
-
0028148698
-
Ribosomal protein gene sequence changes in erythromycin-resistant mutants of Escherichia coli
-
Chittum, H.S., and Champney, W.S. (1994) Ribosomal protein gene sequence changes in erythromycin-resistant mutants of Escherichia coli. J Bacteriol 176: 6192-6198.
-
(1994)
J Bacteriol
, vol.176
, pp. 6192-6198
-
-
Chittum, H.S.1
Champney, W.S.2
-
7
-
-
0024587767
-
Mono- and dimethylating activities and kinetic studies of the ermC 23S rRNA methyltransferase
-
Denoya, C., and Dubnau, D. (1989) Mono- and dimethylating activities and kinetic studies of the ermC 23S rRNA methyltransferase. J Biol Chem 264: 2615-2624.
-
(1989)
J Biol Chem
, vol.264
, pp. 2615-2624
-
-
Denoya, C.1
Dubnau, D.2
-
8
-
-
26944438340
-
Ketolide resistance in Streptococcus pyogenes correlates with the degree of rRNA dimethylation by Erm
-
Douthwaite, S., Jalava, J., and Jakobsen, L. (2005) Ketolide resistance in Streptococcus pyogenes correlates with the degree of rRNA dimethylation by Erm. Mol Microbiol 58: 613-622.
-
(2005)
Mol Microbiol
, vol.58
, pp. 613-622
-
-
Douthwaite, S.1
Jalava, J.2
Jakobsen, L.3
-
9
-
-
33644875540
-
MODOMICS: a database of RNA modification pathways
-
Dunin-Horkawicz, S., Czerwoniec, A., Gajda, M.J., Feder, M., Grosjean, H., and Bujnicki, J.M. (2006) MODOMICS: a database of RNA modification pathways. Nucleic Acids Res 34: D145-D149.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Dunin-Horkawicz, S.1
Czerwoniec, A.2
Gajda, M.J.3
Feder, M.4
Grosjean, H.5
Bujnicki, J.M.6
-
10
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
11
-
-
0034765229
-
Detection of macrolide resistance mechanisms in Streptococcus pneumoniae and Streptococcus pyogenes using a multiplex rapid cycle PCR with microwell-format probe hybridization
-
Farrell, D.J., Morrissey, I., Bakker, S., and Felmingham, D. (2001) Detection of macrolide resistance mechanisms in Streptococcus pneumoniae and Streptococcus pyogenes using a multiplex rapid cycle PCR with microwell-format probe hybridization. J Antimicrob Chemother 48: 541-544.
-
(2001)
J Antimicrob Chemother
, vol.48
, pp. 541-544
-
-
Farrell, D.J.1
Morrissey, I.2
Bakker, S.3
Felmingham, D.4
-
12
-
-
73149087279
-
Bovine pasteurellosis and other bacterial infections of the respiratory tract
-
Griffin, D. (2010) Bovine pasteurellosis and other bacterial infections of the respiratory tract. Vet Clin North Am Food Anim Pract 26: 57-71.
-
(2010)
Vet Clin North Am Food Anim Pract
, vol.26
, pp. 57-71
-
-
Griffin, D.1
-
14
-
-
77952132864
-
Pharmacokinetics of gamithromycin in cattle with comparison of plasma and lung tissue concentrations and plasma antibacterial activity
-
Huang, R.A., Letendre, L.T., Banav, N., Fischer, J., and Somerville, B. (2010) Pharmacokinetics of gamithromycin in cattle with comparison of plasma and lung tissue concentrations and plasma antibacterial activity. J Vet Pharmacol Ther 33: 227-237.
-
(2010)
J Vet Pharmacol Ther
, vol.33
, pp. 227-237
-
-
Huang, R.A.1
Letendre, L.T.2
Banav, N.3
Fischer, J.4
Somerville, B.5
-
15
-
-
33746106088
-
Capreomycin binds across the ribosomal subunit interface using tlyA-encoded 2'-O-methylations in 16S and 23S rRNAs
-
Johansen, S.K., Maus, C.E., Plikaytis, B.B., and Douthwaite, S. (2006) Capreomycin binds across the ribosomal subunit interface using tlyA-encoded 2'-O-methylations in 16S and 23S rRNAs. Mol Cell 23: 173-182.
-
(2006)
Mol Cell
, vol.23
, pp. 173-182
-
-
Johansen, S.K.1
Maus, C.E.2
Plikaytis, B.B.3
Douthwaite, S.4
-
16
-
-
70349248071
-
Antimicrobial resistance and genetic characterization of fluoroquinolone-resistant Mannheimia haemolytica isolates from cattle with bovine pneumonia
-
Katsuda, K., Kohmoto, M., Mikami, O., and Uchida, I. (2009) Antimicrobial resistance and genetic characterization of fluoroquinolone-resistant Mannheimia haemolytica isolates from cattle with bovine pneumonia. Vet Microbiol 139: 74-79.
-
(2009)
Vet Microbiol
, vol.139
, pp. 74-79
-
-
Katsuda, K.1
Kohmoto, M.2
Mikami, O.3
Uchida, I.4
-
17
-
-
0035154953
-
RNA fragmentation studied in a matrix-assisted laser desorption/ionisation tandem quadrupole/orthogonal time-of-flight mass spectrometer
-
Kirpekar, F., and Krogh, T.N. (2001) RNA fragmentation studied in a matrix-assisted laser desorption/ionisation tandem quadrupole/orthogonal time-of-flight mass spectrometer. Rapid Commun Mass Spectrom 15: 8-14.
-
(2001)
Rapid Commun Mass Spectrom
, vol.15
, pp. 8-14
-
-
Kirpekar, F.1
Krogh, T.N.2
-
18
-
-
0033950924
-
Mapping posttranscriptional modifications in 5S ribosomal RNA by MALDI mass spectrometry
-
Kirpekar, F., Douthwaite, S., and Roepstorff, P. (2000) Mapping posttranscriptional modifications in 5S ribosomal RNA by MALDI mass spectrometry. RNA 6: 296-306.
-
(2000)
RNA
, vol.6
, pp. 296-306
-
-
Kirpekar, F.1
Douthwaite, S.2
Roepstorff, P.3
-
19
-
-
75749133231
-
Genome sequences of Mannheimia haemolytica serotype A2: ovine and bovine isolates
-
Lawrence, P.K., Kittichotirat, W., Bumgarner, R.E., McDermott, J.E., Herndon, D.R., Knowles, D.P., and Srikumaran, S. (2010) Genome sequences of Mannheimia haemolytica serotype A2: ovine and bovine isolates. J Bacteriol 192: 1167-1168.
-
(2010)
J Bacteriol
, vol.192
, pp. 1167-1168
-
-
Lawrence, P.K.1
Kittichotirat, W.2
Bumgarner, R.E.3
McDermott, J.E.4
Herndon, D.R.5
Knowles, D.P.6
Srikumaran, S.7
-
20
-
-
0037069328
-
Resistance to the macrolide antibiotic tylosin is conferred by single methylations at 23S rRNA nucleotides G748 and A2058 acting in synergy
-
Liu, M., and Douthwaite, S. (2002a) Resistance to the macrolide antibiotic tylosin is conferred by single methylations at 23S rRNA nucleotides G748 and A2058 acting in synergy. Proc Natl Acad Sci USA 99: 14658-14663.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 14658-14663
-
-
Liu, M.1
Douthwaite, S.2
-
21
-
-
0036096197
-
Activity of the ketolide antibiotic telithromycin is refractory to Erm monomethylation of bacterial rRNA
-
Liu, M., and Douthwaite, S. (2002b) Activity of the ketolide antibiotic telithromycin is refractory to Erm monomethylation of bacterial rRNA. Antimicrob Agents Chemother 46: 1629-1633.
-
(2002)
Antimicrob Agents Chemother
, vol.46
, pp. 1629-1633
-
-
Liu, M.1
Douthwaite, S.2
-
23
-
-
24144502088
-
Mycobacterium smegmatis Erm(38) is a reluctant dimethyltransferase
-
Madsen, C.T., Jakobsen, L., and Douthwaite, S. (2005a) Mycobacterium smegmatis Erm(38) is a reluctant dimethyltransferase. Antimicrob Agents Chemother 49: 3803-3809.
-
(2005)
Antimicrob Agents Chemother
, vol.49
, pp. 3803-3809
-
-
Madsen, C.T.1
Jakobsen, L.2
Douthwaite, S.3
-
24
-
-
28244483842
-
Methyltransferase Erm(37) slips on rRNA to confer atypical resistance in Mycobacterium tuberculosis
-
Madsen, C.T., Jakobsen, L., Buriankova, K., Doucet-Populaire, F., Pernodet, J.L., and Douthwaite, S. (2005b) Methyltransferase Erm(37) slips on rRNA to confer atypical resistance in Mycobacterium tuberculosis. J Biol Chem 280: 38942-38947.
-
(2005)
J Biol Chem
, vol.280
, pp. 38942-38947
-
-
Madsen, C.T.1
Jakobsen, L.2
Buriankova, K.3
Doucet-Populaire, F.4
Pernodet, J.L.5
Douthwaite, S.6
-
25
-
-
33747183094
-
Integrons: agents of bacterial evolution
-
Mazel, D. (2006) Integrons: agents of bacterial evolution. Nat Rev Microbiol 4: 608-620.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 608-620
-
-
Mazel, D.1
-
26
-
-
0029845913
-
Multidrug efflux pumps of gram-negative bacteria
-
Nikaido, H. (1996) Multidrug efflux pumps of gram-negative bacteria. J Bacteriol 178: 5853-5859.
-
(1996)
J Bacteriol
, vol.178
, pp. 5853-5859
-
-
Nikaido, H.1
-
27
-
-
0023691425
-
Genetic applications of an inverse polymerase chain reaction
-
Ochman, H., Gerber, A.S., and Hartl, D.L. (1988) Genetic applications of an inverse polymerase chain reaction. Genetics 120: 621-623.
-
(1988)
Genetics
, vol.120
, pp. 621-623
-
-
Ochman, H.1
Gerber, A.S.2
Hartl, D.L.3
-
28
-
-
0017657612
-
Properties of ribosomes from erythromycin resistant mutants of Escherichia coli
-
Pardo, D., and Rosset, R. (1977) Properties of ribosomes from erythromycin resistant mutants of Escherichia coli. Mol Gen Genet 156: 267-271.
-
(1977)
Mol Gen Genet
, vol.156
, pp. 267-271
-
-
Pardo, D.1
Rosset, R.2
-
29
-
-
28144441826
-
The bacterial ribosome as a target for antibiotics
-
Poehlsgaard, J., and Douthwaite, S. (2005) The bacterial ribosome as a target for antibiotics. Nat Rev Microbiol 3: 870-881.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 870-881
-
-
Poehlsgaard, J.1
Douthwaite, S.2
-
30
-
-
42449112810
-
Update on macrolide-lincosamide-streptogramin, ketolide, and oxazolidinone resistance genes
-
Roberts, M.C. (2008) Update on macrolide-lincosamide-streptogramin, ketolide, and oxazolidinone resistance genes. FEMS Microbiol Lett 282: 147-159.
-
(2008)
FEMS Microbiol Lett
, vol.282
, pp. 147-159
-
-
Roberts, M.C.1
-
31
-
-
0032762933
-
Nomenclature for macrolide and macrolide-lincomycin-streptogramin B resistance determinants
-
Roberts, M.C., Sutcliffe, J., Courvalin, P., Jensen, L.B., Rood, J., and Seppälä, H. (1999) Nomenclature for macrolide and macrolide-lincomycin-streptogramin B resistance determinants. Antimicrob Agents Chemother 43: 2823-2830.
-
(1999)
Antimicrob Agents Chemother
, vol.43
, pp. 2823-2830
-
-
Roberts, M.C.1
Sutcliffe, J.2
Courvalin, P.3
Jensen, L.B.4
Rood, J.5
Seppälä, H.6
-
33
-
-
0014186539
-
Mutants of Escherichia coli permeable to actinomycin
-
Sekiguchi, M., and Iida, S. (1967) Mutants of Escherichia coli permeable to actinomycin. Proc Natl Acad Sci USA 58: 2315-2320.
-
(1967)
Proc Natl Acad Sci USA
, vol.58
, pp. 2315-2320
-
-
Sekiguchi, M.1
Iida, S.2
-
34
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure, J., and Ji, H. (2008) Next-generation DNA sequencing. Nat Biotechnol 26: 1135-1145.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
35
-
-
0028938413
-
An improved PCR method for walking in uncloned genomic DNA
-
Siebert, P.D., Chenchik, A., Kellogg, D.E., Lukyanov, K.A., and Lukyanov, S.A. (1995) An improved PCR method for walking in uncloned genomic DNA. Nucleic Acids Res 23: 1087-1088.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 1087-1088
-
-
Siebert, P.D.1
Chenchik, A.2
Kellogg, D.E.3
Lukyanov, K.A.4
Lukyanov, S.A.5
-
36
-
-
0021064473
-
Site of action of a ribosomal RNA methylase responsible for resistance to erythromycin and other antibiotics
-
Skinner, R., Cundliffe, E., and Schmidt, F.J. (1983) Site of action of a ribosomal RNA methylase responsible for resistance to erythromycin and other antibiotics. J Biol Chem 258: 12702-12706.
-
(1983)
J Biol Chem
, vol.258
, pp. 12702-12706
-
-
Skinner, R.1
Cundliffe, E.2
Schmidt, F.J.3
-
37
-
-
34547630891
-
Bovine respiratory disease in feedlot cattle: phenotypic, environmental, and genetic correlations with growth, carcass, and longissimus muscle palatability traits
-
Snowder, G.D., Van Vleck, L.D., Cundiff, L.V., Bennett, G.L., Koohmaraie, M., and Dikeman, M.E. (2007) Bovine respiratory disease in feedlot cattle: phenotypic, environmental, and genetic correlations with growth, carcass, and longissimus muscle palatability traits. J Anim Sci 85: 1885-1892.
-
(2007)
J Anim Sci
, vol.85
, pp. 1885-1892
-
-
Snowder, G.D.1
Van Vleck, L.D.2
Cundiff, L.V.3
Bennett, G.L.4
Koohmaraie, M.5
Dikeman, M.E.6
-
38
-
-
0024241761
-
Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
-
Stern, S., Moazed, D., and Noller, H.F. (1988) Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension. Methods Enzymol 164: 481-489.
-
(1988)
Methods Enzymol
, vol.164
, pp. 481-489
-
-
Stern, S.1
Moazed, D.2
Noller, H.F.3
-
39
-
-
0035160878
-
Macrolide resistance conferred by base substitutions in 23S rRNA
-
Vester, B., and Douthwaite, S. (2001) Macrolide resistance conferred by base substitutions in 23S rRNA. Antimicrob Agents Chemother 45: 1-12.
-
(2001)
Antimicrob Agents Chemother
, vol.45
, pp. 1-12
-
-
Vester, B.1
Douthwaite, S.2
-
40
-
-
73349093757
-
Antimicrobial resistance in bovine respiratory disease pathogens: measures, trends, and impact on efficacy
-
Watts, J.L., and Sweeney, M.T. (2010) Antimicrobial resistance in bovine respiratory disease pathogens: measures, trends, and impact on efficacy. Vet Clin North Am Food Anim Pract 26: 79-88.
-
(2010)
Vet Clin North Am Food Anim Pract
, vol.26
, pp. 79-88
-
-
Watts, J.L.1
Sweeney, M.T.2
-
41
-
-
0028963496
-
Erythromycin resistance by ribosome modification
-
Weisblum, B. (1995) Erythromycin resistance by ribosome modification. Antimicrob Agents Chemother 39: 577-585.
-
(1995)
Antimicrob Agents Chemother
, vol.39
, pp. 577-585
-
-
Weisblum, B.1
-
42
-
-
0002136086
-
Macrolide resistance
-
Weisblum, B. (1998) Macrolide resistance. Drug Resist Updat 1: 29-41.
-
(1998)
Drug Resist Updat
, vol.1
, pp. 29-41
-
-
Weisblum, B.1
-
43
-
-
70450233600
-
The A-Z of bacterial translation inhibitors
-
Wilson, D.N. (2009) The A-Z of bacterial translation inhibitors. Crit Rev Biochem Mol Biol 44: 393-433.
-
(2009)
Crit Rev Biochem Mol Biol
, vol.44
, pp. 393-433
-
-
Wilson, D.N.1
-
44
-
-
0015745765
-
Biochemical and genetic studies on two different types of erythromycin resistant mutants of Escherichia coli with altered ribosomal proteins
-
Wittmann, H.G., Stöffler, G., Apirion, D., Rosen, L., Tanaka, K., Tamaki, M., etal. (1973) Biochemical and genetic studies on two different types of erythromycin resistant mutants of Escherichia coli with altered ribosomal proteins. Mol Gen Genet 127: 175-189.
-
(1973)
Mol Gen Genet
, vol.127
, pp. 175-189
-
-
Wittmann, H.G.1
Stöffler, G.2
Apirion, D.3
Rosen, L.4
Tanaka, K.5
Tamaki, M.6
-
45
-
-
0032904341
-
A ketolide resistance mutation in domain II of 23S rRNA reveals the proximity of hairpin 35 to the peptidyl transferase centre
-
Xiong, L., Shah, S., Mauvais, P., and Mankin, A.S. (1999) A ketolide resistance mutation in domain II of 23S rRNA reveals the proximity of hairpin 35 to the peptidyl transferase centre. Mol Microbiol 31: 633-639.
-
(1999)
Mol Microbiol
, vol.31
, pp. 633-639
-
-
Xiong, L.1
Shah, S.2
Mauvais, P.3
Mankin, A.S.4
-
46
-
-
0025268290
-
Methylation of 23S ribosomal RNA due to carB, an antibiotic-resistance determinant from the carbomycin producer, Streptomyces thermotolerans
-
Zalacain, M., and Cundliffe, E. (1990) Methylation of 23S ribosomal RNA due to carB, an antibiotic-resistance determinant from the carbomycin producer, Streptomyces thermotolerans. Eur J Biochem 189: 67-72.
-
(1990)
Eur J Biochem
, vol.189
, pp. 67-72
-
-
Zalacain, M.1
Cundliffe, E.2
|