Multilocus variable-number of tandem-repeats analysis of Salmonella enterica serotype Gallinarum and comparison with pulsed-field gel electrophoresis genotyping

Veterinary Microbiology

Volumn 149, Issue 3-4, 2011, Pages 430-436

  Bergamini, Federica ^a   Iori, Alessandra ^a   Massi, Paola ^a   Pongolini, Stefano ^a  

^a ISTITUTO ZOOPROFILATTICO SPERIMENTALE DELLA LOMBARDIA E DELL EMILIA ROMAGNA   (Italy)

Author keywords

Fowl typhoid; MLVA; PFGE; Salmonella Gallinarum; VNTR

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; RNA 5S; SPACER DNA;

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; FOWL TYPHOID; GENE LOCUS; GENE SEQUENCE; GENETIC IDENTIFICATION; GENETIC PROCEDURES; GENETIC STABILITY; GENOTYPE; INTERMETHOD COMPARISON; MICROBIOLOGICAL EXAMINATION; MULTILOCUS VARIABLE NUMBER OF TANDEM REPEAT ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PULSED FIELD GEL ELECTROPHORESIS; REPRODUCIBILITY; SALMONELLA GALLINARUM; VARIABLE NUMBER OF TANDEM REPEAT;

ANIMALS; BACTERIAL TYPING TECHNIQUES; BIRD DISEASES; BIRDS; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL SPACER; ELECTROPHORESIS, GEL, PULSED-FIELD; GENOTYPE; GENOTYPING TECHNIQUES; MINISATELLITE REPEATS; MULTILOCUS SEQUENCE TYPING; REPRODUCIBILITY OF RESULTS; SALMONELLA ENTERICA; SALMONELLA INFECTIONS, ANIMAL; SENSITIVITY AND SPECIFICITY;

BACTERIA (MICROORGANISMS); SALMONELLA; SALMONELLA ENTERICA; SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR GALLINARUM;

EID: 79953043589     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.vetmic.2010.12.002     Document Type: Article

References (24)

1. Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999, 27:573-580.
2. Cho S., Boxrud D.J., Bartkus J.M., Whittam T.S., Saeed M. Multiple-locus variable-number tandem repeat analysis of Salmonella Enteritidis isolates from human and non-human sources using a single multiplex PCR. FEMS Microbiol. Lett. 2007, 275:16-23.
3. Dodson S.V., Maurer J.J., Holt P.S., Lee M.D. Temporal changes in the population genetics of Salmonella pullorum. Avian Dis. 1999, 43:685-695.
4. Grundmann H., Hori S., Tanner G. Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms. J. Clin. Microbiol. 2001, 39:4190-4192.
5. Hong S.F., Chiu C.H., Chu C., Feng Y., Ou J.T. Complete nucleotide sequence of a virulence plasmid of Salmonella enterica serovar Dublin and its phylogenetic relationship to the virulence plasmids of serovars Choleraesuis, Enteritidis and Typhimurium. FEMS Microbiol. Lett. 2008, 282:39-43.
6. Hunter P.R., Gaston M.A. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 1988, 26:2465-2466.
7. Jin J.D., Lee D.S., Shin E.K., Kim S.J., Jung R., Hahn T.W. Molecular typing by random amplification of polymorphic DNA (RAPD) and detection of virulence genes of Salmonella enterica subspecies enterica serovar Gallinarum biovar gallinarum. J. Vet. Med. Sci. 2006, 68:1321-1326.
8. Kwon Y.K., Kim A., Kang M.S., Her M., Jung B.Y., Lee K.M., Jeong W., An B.K., Kwon J.H. Prevalence and characterization of Salmonella Gallinarum in the chicken in Korea during 2000-2008. Poult. Sci. 2009, 89:236-242.
9. Lindstedt B.A., Vardund T., Aas L., Kapperud G. Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis. J. Microbiol. Methods 2004, 59:163-172.
10. Lindstedt B.A. Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria. Electrophoresis 2005, 26:2567-2582.
11. Malorny B., Junker E., Helmuth R. Multi-locus variable-number tandem repeat analysis for outbreak studies of Salmonella enterica serotype Enteritidis. BMC Microbiol. 2008, 8-84. 10.1186/1471-2180-8-84.
12. Marshall O.J. PerlPrimer: cross-platform, graphical primer design for standard, bisulphite and real-time PCR. Bioinformatics 2004, 20:2471-2472.
13. Morales C.A., Gast R., Guard-Bouldin J. Linkage of avian and reproductive tract tropism with sequence divergence adjacent to the 5S ribosomal subunit rrfH of Salmonella enterica. FEMS Microbiol. Lett. 2006, 264:48-58.
14. Nei M. Molecular Evolutionary Genetics 1987, Columbia University Press, NewYork.
15. OIE, World Animal Health Information Database: http://www.oie.int/wahid-prod/public.php.
16. Olsen J.E., Skov M.N., Christensen J.P., Bisgaard M. Genomic lineage of Salmonella enterica serotype Gallinarum. J. Med. Microbiol. 1996, 45:413-418.
17. Ramisse V., Houssu P., Hernandez E., Denoeud F., Hilaire V., Lisanti O., Ramisse F., Cavallo J.D., Vergnaud G. Variable number of tandem repeats in Salmonella enterica subsp. enterica for typing purposes. J. Clin. Microbiol. 2004, 42:5722-5730.
18. Seo Y.S., Lee S.H., Shin E.K., Kim S.J., Jung R., Hahn T.W. Pulsed-field gel electrophoresis genotyping of Salmonella gallinarum and comparison with random amplified polymorphic DNA. Vet. Microbiol. 2006, 115:349-357.
19. Shivaprasad H.L. Fowl typhoid and pullorum disease. Rev. Sci. Technol. 2000, 19:405-424.
20. Simpson E.H. Measurement of diversity. Nature 1949, 163:688.
21. Thomson N.R., Clayton D.J., Windhorst D., Vernikos G., Davidson S., Churcher C., Quail M.A., Stevens M., Jones M.A., Watson M., Barron A., Layton A., Pickard D., Kingsley R.A., Bignell A., Clark L., Harris B., Ormond D., Abdellah Z., Brooks K., Cherevach I., Chillingworth T., Woodward J., Norberczak H., Lord A., Arrowsmith C., Jagels K., Moule S., Mungall K., Sanders M., Whitehead S., Chabalgoity J.A., Maskell D., Humphrey T., Roberts M., Barrow P.A., Dougan G., Parkhill J. Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways. Genome Res. 2008, 18:1624-1637.
22. van Belkum A., Scherer S., van Alphen L., Verbrugh H. Short-sequence DNA repeats in prokaryotic genomes. Microbiol. Mol. Biol. Rev. 1998, 62:275-293.
23. van Belkum A. Short sequence repeats in microbial pathogenesis and evolution. Cell. Mol. Life Sci. 1999, 56:729-734.
24. van Belkum A. Tracing isolates of bacterial species by multilocus variable number of tandem repeat analysis (MLVA). FEMS Immunol. Med. Microbiol. 2007, 49:22-27.