Theoretical and experimental characterization of the scope of protein O-glycosylation in Bacteroides fragilis

Journal of Biological Chemistry

Volumn 286, Issue 5, 2011, Pages 3219-3226

  Fletcher, C Mark ^a   Coyne, Michael J ^a   Comstock, Laurie E ^a  

^a BRIGHAM AND WOMEN S HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID MOTIFS; BACTERIAL SPECIES; BACTEROIDES FRAGILIS; CLEAVAGE SITES; COMPUTATIONAL ANALYSIS; ENGINEERED SITE; ESSENTIAL GENE; EXPERIMENTAL CHARACTERIZATION; EXTRACYTOPLASMIC; GLYCOSYLATED; IN-CELL; INNER MEMBRANES; O-GLYCOSYLATION; PROTEOMES; SIGNAL PEPTIDASE; SITE DIRECTED MUTAGENESIS; SITE-SPECIFIC; THREONINE RESIDUES; TRANSMEMBRANES;

AMINO ACIDS; CELL PROLIFERATION; ESTERIFICATION; GENES; GLYCOPROTEINS; GLYCOSYLATION;

PROTEINS;

GLYCOSYLATED PROTEIN; ASPARTIC PROTEINASE; BACTERIAL PROTEIN; MEMBRANE PROTEIN; PROTEOME; SERINE PROTEINASE; SIGNAL PEPTIDASE II; TYPE I SIGNAL PEPTIDASE;

ARTICLE; BACTEROIDES FRAGILIS; CELL DIVISION; CHROMOSOME SEGREGATION; CONTROLLED STUDY; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN GLYCOSYLATION; PROTEIN LOCALIZATION; PROTEIN SECRETION; SITE DIRECTED MUTAGENESIS; AMINO ACID SEQUENCE; BINDING SITE; BIOLOGY; CHEMISTRY; GLYCOSYLATION; METABOLISM; METHODOLOGY; NUCLEOTIDE SEQUENCE; PROTEIN MOTIF;

BACTERIA (MICROORGANISMS); BACTEROIDES FRAGILIS;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; ASPARTIC ACID ENDOPEPTIDASES; BACTERIAL PROTEINS; BACTEROIDES FRAGILIS; BINDING SITES; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; GLYCOSYLATION; MEMBRANE PROTEINS; MUTAGENESIS, SITE-DIRECTED; PROTEOME; SERINE ENDOPEPTIDASES;

EID: 79952797070     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.194506     Document Type: Article

References (35)

1. Young, N. M., Brisson, J. R., Kelly, J., Watson, D. C., Tessier, L., Lanthier, P. H., Jarrell, H. C., Cadotte, N., St. Michael, F., Aberg, E., and Szymanski, C. M. (2002) J. Biol. Chem. 277, 42530-42539
2. Nothaft, H., and Szymanski, C. M. (2010) Nat. Rev. Microbiol. 8, 765-778
3. Scott, N. E., Parker, B. L., Connolly, A. M., Paulech, J., Edwards, A. V., Crossett, B., Falconer, L., Kolarich, D., Djordjevic, S. P., Hojrup, P., Packer, N. H., Larsen, M. R., and Cordwell, S. J. (April 1, 2010) Mol. Cell Proteomics 10.1074/mcp.M000031-MCP201
4. Kowarik, M., Young, N. M., Numao, S., Schulz, B. L., Hug, I., Callewaert, N., Mills, D. C., Watson, D. C., Hernandez, M., Kelly, J. F., Wacker, M., and Aebi, M. (2006) EMBO J. 25, 1957-1966
5. Jervis, A. J., Langdon, R., Hitchen, P., Lawson, A. J., Wood, A., Fothergill, J. L., Morris, H. R., Dell, A., Wren, B., and Linton, D. (2010) J. Bacteriol. 192, 5228-5236
6. Vik, A., Aas, F. E., Anonsen, J. H., Bilsborough, S., Schneider, A., Egge-Jacobsen, W., and Koomey, M. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 4447-4452
7. Fletcher, C. M., Coyne, M. J., Villa, O. F., Chatzidaki-Livanis, M., and Comstock, L. E. (2009) Cell 137, 321-331
8. Espitia, C., Servin-Gonzalez, L., and Mancilla, R. (2010) Mol. Biosyst. 6, 775-781
9. Castric, P. (1995) Microbiology 141, 1247-1254
10. Hug, I., and Feldman, M. F. (September 24, 2010) Glycobiology 10.1093/glycob/cwq148
11. Szymanski, C. M., Burr, D. H., and Guerry, P. (2002) Infect. Immun. 70, 2242-2244
12. Cerdeño-Tárraga, A. M., Patrick, S., Crossman, L. C., Blakely, G., Abratt, V., Lennard, N., Poxton, I., Duerden, B., Harris, B., Quail, M. A., Barron, A., Clark, L., Corton, C., Doggett, J., Holden, M. T., Larke, N., Line, A., Lord, A., Norbertczak, H., Ormond, D., Price, C., Rabbinowitsch, E., Woodward, J., Barrell, B., and Parkhill, J. (2005) Science 307, 1463-1465
13. Xu, J., Bjursell, M. K., Himrod, J., Deng, S., Carmichael, L. K., Chiang, H. C., Hooper, L. V., and Gordon, J. I. (2003) Science 299, 2074-2076
14. Kanehisa, M., and Goto, S. (2000) Nucleic Acids Res. 28, 27-30
15. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990) J. Mol. Biol. 215, 403-410
16. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402
17. Moreno-Hagelsieb, G., and Latimer, K. (2008) Bioinformatics 24, 319-324
18. Goodman, A. L., McNulty, N. P., Zhao, Y., Leip, D., Mitra, R. D., Lozupone, C. A., Knight, R., and Gordon, J. I. (2009) Cell Host Microbe 6, 279-289
19. Juncker, A. S., Willenbrock, H., Von Heijne, G., Brunak, S., Nielsen, H., and Krogh, A. (2003) Protein Sci. 12, 1652-1662
20. Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E. L. (2001) J. Mol. Biol. 305, 567-580
21. Sonnhammer, E. L., von Heijne, G., and Krogh, A. (1998) Proc Int. Conf. Intell. Syst. Mol. Biol. 6, 175-182
22. Finn, R. D., Tate, J., Mistry, J., Coggill, P. C., Sammut, S. J., Hotz, H. R., Ceric, G., Forslund, K., Eddy, S. R., Sonnhammer, E. L., and Bateman, A. (2008) Nucleic Acids Res. 36, D281-288
23. Eddy, S. R. (1998) Bioinformatics 14, 755-763
24. Coyne, M. J., Reinap, B., Lee, M. M., and Comstock, L. E. (2005) Science 307, 1778-1781
25. Reeves, A. R., D'Elia, J. N., Frias, J., and Salyers, A. A. (1996) J. Bacteriol. 178, 823-830
26. Shipman, J. A., Berleman, J. E., and Salyers, A. A. (2000) J. Bacteriol. 182, 5365-5372
27. Cho, K. H., and Salyers, A. A. (2001) J. Bacteriol 183, 7224-7230
28. Carson, M. J., Barondess, J., and Beckwith, J. (1991) J. Bacteriol. 173, 2187-2195
29. Gill, D. R., and Salmond, G. P. (1987) Mol. Gen. Genet. 210, 504-508
30. Bowler, L. D., and Spratt, B. G. (1989) Mol. Microbiol. 3, 1277-1286
31. Martelli, P. L., Fariselli, P., Krogh, A., and Casadio, R. (2002) Bioinformatics 18, (Suppl. 1) S46-S53
32. Bagos, P. G., Liakopoulos, T. D., Spyropoulos, I. C., and Hamodrakas, S. J. (2004) Nucleic Acids Res. 32, W400-W404
33. Gromiha, M. M., Ahmad, S., and Suwa, M. (2004) J. Comput. Chem. 25, 762-767
34. Imperiali, B., and Hendrickson, T. L. (1995) Bioorg. Med. Chem. 3, 1565-1578
35. Yu, N. Y., Wagner, J. R., Laird, M. R., Melli, G., Rey, S., Lo, R., Dao, P., Sahinalp, S. C., Ester, M., Foster, L. J., and Brinkman, F. S. (2010) Bioinformatics 26, 1608-1615