-
1
-
-
0037119587
-
Science
-
p. 10.1126/science.1070919, 0036-8075
-
Elowitz, M.B., Levine, A.J., and Siggia, E.D.: et al. 'Stochastic gene expression in a single cell', Science, 2002, 297, (5584), p. 1183-118610.1126/science.1070919 0036-8075
-
(2002)
Stochastic gene expression in a single cell
, vol.297
, Issue.5584
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
-
2
-
-
53549123008
-
Cell
-
10.1016/j.cell.2008.09.050
-
Raj, A., and van Oudenaarden, A.: 'Nature, nurture, or chance: stochastic gene expression and its consequences', Cell, 2008, 135, (2), p. 216-22610.1016/j.cell.2008.09.050
-
(2008)
Nature, nurture, or chance: stochastic gene expression and its consequences
, vol.135
, Issue.2
, pp. 216-226
-
-
Raj, A.1
van Oudenaarden, A.2
-
3
-
-
16644373292
-
PLoS Biol.
-
and: '', p. e13710.1371/journal.pbio.0020137
-
Fraser, H.B., Hirsh, A.E., and Giaever, G.: et al. 'Noise minimization in eukaryotic gene expression', PLoS Biol., 2004, 2, (6), p. e13710.1371/journal.pbio.0020137
-
(2004)
Noise minimization in eukaryotic gene expression
, vol.2
, Issue.6
-
-
Fraser, H.B.1
Hirsh, A.E.2
Giaever, G.3
-
5
-
-
0036578645
-
Nat. Genet.
-
p. 10.1038/ng869
-
Ozbudak, E.M., Thattai, M., and Kurtser, I.: et al. 'Regulation of noise in the expression of a single gene', Nat. Genet., 2002, 31, (1), p. 69-7310.1038/ng869
-
(2002)
Regulation of noise in the expression of a single gene
, vol.31
, Issue.1
, pp. 69-73
-
-
Ozbudak, E.M.1
Thattai, M.2
Kurtser, I.3
-
6
-
-
0242416539
-
Nature
-
and: '', p. 10.1038/nature01546, 0028-0836
-
Blake, W.J., Kaern, M., and Cantor, C.R.: et al. 'Noise in eukaryotic gene expression', Nature, 2003, 422, (6932), p. 633-63710.1038/nature01546 0028-0836
-
(2003)
Noise in eukaryotic gene expression
, vol.422
, Issue.6932
, pp. 633-637
-
-
Blake, W.J.1
Kaern, M.2
Cantor, C.R.3
-
7
-
-
2942718723
-
Science
-
10.1126/science.1098641, 0036-8075
-
Raser, J.M., and O'Shea, E.K.: 'Control of stochasticity in eukaryotic gene expression', Science, 2004, 304, (5678), p. 1811-181410.1126/science.1098641 0036-8075
-
(2004)
Control of stochasticity in eukaryotic gene expression
, vol.304
, Issue.5678
, pp. 1811-1814
-
-
Raser, J.M.1
O'Shea, E.K.2
-
8
-
-
0842285841
-
Nature
-
'', p. 10.1038/nature02257, 0028-0836
-
Paulsson, J.: 'Summing up the noise in gene networks', Nature, 2004, 427, (6973), p. 415-41810.1038/nature02257 0028-0836
-
(2004)
Summing up the noise in gene networks
, vol.427
, Issue.6973
, pp. 415-418
-
-
Paulsson, J.1
-
9
-
-
0036790975
-
Proc. Natl. Acad. Sci. USA
-
10.1073/pnas.162041399, 0027-8424
-
Swain, P.S., Elowitz, M.B., and Siggia, E.D.: 'Intrinsic and extrinsic contributions to stochasticity in gene expression', Proc. Natl. Acad. Sci. USA, 2002, 99, (20), p. 12795-1280010.1073/pnas.162041399 0027-8424
-
(2002)
Intrinsic and extrinsic contributions to stochasticity in gene expression
, vol.99
, Issue.20
, pp. 12795-12800
-
-
Swain, P.S.1
Elowitz, M.B.2
Siggia, E.D.3
-
10
-
-
15544388848
-
Science
-
10.1126/science.1109090, 0036-8075
-
Pedraza, J.M., and van Oudenaarden, A.: 'Noise propagation in gene networks', Science, 2005, 307, (5717), p. 1965-196910.1126/science.1109090 0036-8075
-
(2005)
Noise propagation in gene networks
, vol.307
, Issue.5717
, pp. 1965-1969
-
-
Pedraza, J.M.1
van Oudenaarden, A.2
-
11
-
-
14844358192
-
Proc. Natl. Acad. Sci. USA
-
10.1073/pnas.0408507102, 0027-8424
-
Hooshangi, S., Thiberge, S., and Weiss, R.: 'Ultrasensitivity and noise propagation in a synthetic transcriptional cascade', Proc. Natl. Acad. Sci. USA, 2005, 102, (10), p. 3581-358610.1073/pnas.0408507102 0027-8424
-
(2005)
Ultrasensitivity and noise propagation in a synthetic transcriptional cascade
, vol.102
, Issue.10
, pp. 3581-3586
-
-
Hooshangi, S.1
Thiberge, S.2
Weiss, R.3
-
12
-
-
33745725673
-
Chaos
-
10.1063/1.2208927, 1054-1500
-
Hooshangi, S., and Weiss, R.: 'The effect of negative feedback on noise propagation in transcriptional gene networks', Chaos, 2006, 16, (2), p. 02610810.1063/1.2208927 1054-1500
-
(2006)
The effect of negative feedback on noise propagation in transcriptional gene networks
, vol.16
, Issue.2
, pp. 026108
-
-
Hooshangi, S.1
Weiss, R.2
-
13
-
-
70349669011
-
PLoS Comput. Biol.
-
e1000506
-
Bruggeman, F.J., Bluthgen, N., and Westerhoff, H.V.: 'Noise management by molecular networks', PLoS Comput. Biol., 2009, 5, (9), p. e1000506
-
(2009)
Noise management by molecular networks
, vol.5
, Issue.9
-
-
Bruggeman, F.J.1
Bluthgen, N.2
Westerhoff, H.V.3
-
14
-
-
0037078982
-
Nature
-
10.1038/nature01258, 0028-0836
-
Rao, C.V., Wolf, D.M., and Arkin, A.P.: 'Control, exploitation and tolerance of intracellular noise', Nature, 2002, 420, (6912), p. 231-23710.1038/nature01258 0028-0836
-
(2002)
Control, exploitation and tolerance of intracellular noise
, vol.420
, Issue.6912
, pp. 231-237
-
-
Rao, C.V.1
Wolf, D.M.2
Arkin, A.P.3
-
15
-
-
0033782304
-
Bull. Math. Biol.
-
10.1006/bulm.1999.0155, 0092-8240
-
Smolen, P., Baxter, D., and Byrne, J.: 'Modeling transcriptional control in gene networks-methods, recent results, and future directions', Bull. Math. Biol., 2000, 62, (2), p. 247-29210.1006/bulm.1999.0155 0092-8240
-
(2000)
Modeling transcriptional control in gene networks-methods, recent results, and future directions
, vol.62
, Issue.2
, pp. 247-292
-
-
Smolen, P.1
Baxter, D.2
Byrne, J.3
-
16
-
-
2942657194
-
J. Theor. Biol.
-
'', p. 10.1016/j.jtbi.2004.03.011
-
Tao, Y.: 'Intrinsic and external noise in an auto-regulatory genetic network', J. Theor. Biol., 2004, 229, (2), p. 147-15610.1016/j.jtbi.2004.03.011
-
(2004)
Intrinsic and external noise in an auto-regulatory genetic network
, vol.229
, Issue.2
, pp. 147-156
-
-
Tao, Y.1
-
17
-
-
33749666646
-
J. Theor. Biol.
-
10.1016/j.jtbi.2006.06.003
-
Xu, B.L., and Tao, Y.: 'External noise and feedback regulation: steady-state statistics of auto-regulatory genetic network', J. Theor. Biol., 2006, 243, (2), p. 214-22110.1016/j.jtbi.2006.06.003
-
(2006)
External noise and feedback regulation: steady-state statistics of auto-regulatory genetic network
, vol.243
, Issue.2
, pp. 214-221
-
-
Xu, B.L.1
Tao, Y.2
-
18
-
-
68049139445
-
Biophys. J.
-
10.1016/j.bpj.2009.02.064, 0006-3495
-
Singh, A., and Hespanha, J.P.: 'Optimal feedback strength for noise suppression in autoregulatory gene networks', Biophys. J., 2009, 96, (10), p. 4013-402310.1016/j.bpj.2009.02.064 0006-3495
-
(2009)
Optimal feedback strength for noise suppression in autoregulatory gene networks
, vol.96
, Issue.10
, pp. 4013-4023
-
-
Singh, A.1
Hespanha, J.P.2
-
19
-
-
79952653167
-
Silico Biol.
-
Nguyen, L.K., and Kulasiri, D.: 'On multiple regulatory mechanisms in the tryptophan operon system in Escherichia coli: in silico study of perturbation dynamics', Silico Biol., 2008, 8, p. 0037
-
(2008)
On multiple regulatory mechanisms in the tryptophan operon system in Escherichia coli: in silico study of perturbation dynamics
, vol.8
, pp. 0037
-
-
Nguyen, L.K.1
Kulasiri, D.2
-
20
-
-
67650373897
-
BMC Syst. Biol.
-
10.1186/1752-0509-3-51
-
Nguyen, L.K., and Kulasiri, D.: 'On the functional diversity of dynamical behaviour in genetic and metabolic feedback systems', BMC Syst. Biol., 2009, (3), p. 5110.1186/1752-0509-3-51
-
(2009)
On the functional diversity of dynamical behaviour in genetic and metabolic feedback systems
, Issue.3
, pp. 51
-
-
Nguyen, L.K.1
Kulasiri, D.2
-
21
-
-
31844449923
-
Nature
-
and: '', p. 10.1109/BMN.2006.330897, 0028-0836
-
Austin, D.W., Allen, M.S., and McCollum, J.M.: et al. 'Gene network shaping of inherent noise spectra', Nature, 2006, 439, (7076), p. 608-61110.1109/BMN.2006.330897 0028-0836
-
(2006)
Gene network shaping of inherent noise spectra
, vol.439
, Issue.7076
, pp. 608-611
-
-
Austin, D.W.1
Allen, M.S.2
McCollum, J.M.3
-
22
-
-
0037500231
-
J. Biol. Chem.
-
'', p. 10.1074/jbc.X200012200
-
Yanofsky, C.: 'Using studies on tryptophan metabolism to answer basic biological questions', J. Biol. Chem., 2003, 278, (13), p. 10859-1087810.1074/jbc.X200012200
-
(2003)
Using studies on tryptophan metabolism to answer basic biological questions
, vol.278
, Issue.13
, pp. 10859-10878
-
-
Yanofsky, C.1
-
23
-
-
0035852686
-
Proc. Natl. Acad. Sci. USA
-
10.1073/pnas.98.4.1364, 0027-8424
-
Santillan, M., and Mackey, M.C.: 'Dynamic regulation of the tryptophan operon: a modeling study and comparison with experimental data', Proc. Natl. Acad. Sci. USA, 2001, 98, (4), p. 1364-136910.1073/pnas.98.4.1364 0027-8424
-
(2001)
Dynamic regulation of the tryptophan operon: a modeling study and comparison with experimental data
, vol.98
, Issue.4
, pp. 1364-1369
-
-
Santillan, M.1
Mackey, M.C.2
-
24
-
-
85005976913
-
Curr. Bioinform.
-
and: '', p. 10.2174/157489308785909214
-
Kulasiri, D., Nguyen, L.K., and Samarasinghe, S.: et al. 'A review of systems biology perspective on genetic regulatory networks with examples', Curr. Bioinform., 2008, 3, (3), p. 197-22510.2174/157489308785909214
-
(2008)
A review of systems biology perspective on genetic regulatory networks with examples
, vol.3
, Issue.3
, pp. 197-225
-
-
Kulasiri, D.1
Nguyen, L.K.2
Samarasinghe, S.3
-
25
-
-
0034225547
-
J. Chem. Phys.
-
'', p. 10.1063/1.481811, 0021-9606
-
Gillespie, D.T.: 'The chemical Langevin equation', J. Chem. Phys., 2000, 113, (1), p. 297-30610.1063/1.481811 0021-9606
-
(2000)
The chemical Langevin equation
, vol.113
, Issue.1
, pp. 297-306
-
-
Gillespie, D.T.1
-
26
-
-
20344389483
-
Phys. Life Rev.
-
'', p. 10.1016/j.plrev.2005.03.003, 1571-0645
-
Paulsson, J.: 'Models of stochastic gene expression', Phys. Life Rev., 2005, 2, p. 157-17510.1016/j.plrev.2005.03.003 1571-0645
-
(2005)
Models of stochastic gene expression
, vol.2
, pp. 157-175
-
-
Paulsson, J.1
-
27
-
-
0035902599
-
Proc. Natl. Acad. Sci. USA
-
10.1073/pnas.151588598, 0027-8424
-
Thattai, M., and van Oudenaarden, A.: 'Intrinsic noise in gene regulatory networks', Proc. Natl. Acad. Sci. USA, 2001, 98, (15), p. 8614-861910.1073/pnas.151588598 0027-8424
-
(2001)
Intrinsic noise in gene regulatory networks
, vol.98
, Issue.15
, pp. 8614-8619
-
-
Thattai, M.1
van Oudenaarden, A.2
-
28
-
-
38949194331
-
PLoS Comput. Biol.
-
e810.1371/journal.pcbi.0040008.eor
-
Hornung, G., and Barkai, N.: 'Noise propagation and signaling sensitivity in biological networks: a role for positive feedback', PLoS Comput. Biol., 2008, 4, (1), p), p. e810.1371/journal.pcbi.0040008.eor
-
(2008)
Noise propagation and signaling sensitivity in biological networks: a role for positive feedback
, vol.4
-
-
Hornung, G.1
Barkai, N.2
-
29
-
-
0030711638
-
J. Bacteriol.
-
Tsui, H.C., Feng, G., and Winkler, M.E.: 'Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of Escherichia coli K-12', J. Bacteriol., 1997, 179, (23), p. 7476-7487
-
(1997)
Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of Escherichia coli K-12
, vol.179
, Issue.23
, pp. 7476-7487
-
-
Tsui, H.C.1
Feng, G.2
Winkler, M.E.3
-
30
-
-
0028797303
-
Genes Dev.
-
10.1101/gad.9.1.84
-
Jain, C., and Belasco, J.G.: 'RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: unusual sensitivity of the rne transcript to RNase E activity', Genes Dev., 1995, 9, (1), p. 84-9610.1101/gad.9.1.84
-
(1995)
RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: unusual sensitivity of the rne transcript to RNase E activity
, vol.9
, Issue.1
, pp. 84-96
-
-
Jain, C.1
Belasco, J.G.2
-
31
-
-
25444468618
-
Science
-
10.1126/science.1105891, 0036-8075
-
Raser, J.M., and O'Shea, E.K.: 'Noise in gene expression: origins, consequences, and control', Science, 2005, 309, (5743), p. 2010-201310.1126/science.1105891 0036-8075
-
(2005)
Noise in gene expression: origins, consequences, and control
, vol.309
, Issue.5743
, pp. 2010-2013
-
-
Raser, J.M.1
O'Shea, E.K.2
-
32
-
-
78149343153
-
J. R. Soc. Interface
-
and: '', p. 10.1098/rsif.2010.0183
-
Purcell, O., Savery, N.J., and Grierson, C.S.: et al. 'A comparative analysis of synthetic genetic oscillators', J. R. Soc. Interface, 2010, 7, p. 1503-152410.1098/rsif.2010.0183
-
(2010)
A comparative analysis of synthetic genetic oscillators
, vol.7
, pp. 1503-1524
-
-
Purcell, O.1
Savery, N.J.2
Grierson, C.S.3
-
33
-
-
40649083597
-
BMC Syst. Biol.
-
10.1186/1752-0509-2-6
-
Stekel, D.J., and Jenkins, D.J.: 'Strong negative self regulation of prokaryotic transcription factors increases the intrinsic noise of protein expression', BMC Syst. Biol., 2008, 2, p. 610.1186/1752-0509-2-6
-
(2008)
Strong negative self regulation of prokaryotic transcription factors increases the intrinsic noise of protein expression
, vol.2
, pp. 6
-
-
Stekel, D.J.1
Jenkins, D.J.2
-
34
-
-
8544264562
-
J. Mol. Biol.
-
'', p. 10.1016/j.jmb.2004.09.073
-
Swain, P.S.: 'Efficient attenuation of stochasticity in gene expression through post-transcriptional control', J. Mol. Biol., 2004, 344, (4), p. 965-97610.1016/j.jmb.2004.09.073
-
(2004)
Efficient attenuation of stochasticity in gene expression through post-transcriptional control
, vol.344
, Issue.4
, pp. 965-976
-
-
Swain, P.S.1
-
35
-
-
0034712843
-
Proc. Natl. Acad. Sci. USA
-
and: '', p. 10.1073/pnas.97.9.4649, 0027-8424
-
Yi, T.M., Huang, Y., and Simon, M.I.: et al. 'Robust perfect adaptation in bacterial chemotaxis through integral feedback control', Proc. Natl. Acad. Sci. USA, 2000, 97, (9), p. 4649-465310.1073/pnas.97.9.4649 0027-8424
-
(2000)
Robust perfect adaptation in bacterial chemotaxis through integral feedback control
, vol.97
, Issue.9
, pp. 4649-4653
-
-
Yi, T.M.1
Huang, Y.2
Simon, M.I.3
-
36
-
-
33745465094
-
Mol. Syst. Biol.
-
10.1038/msb4100070
-
Doncic, A., Ben-Jacob, E., and Barkai, N.: 'Noise resistance in the spindle assembly checkpoint', Mol. Syst. Biol., 2006, 2, p. 002710.1038/msb4100070
-
(2006)
Noise resistance in the spindle assembly checkpoint
, vol.2
, pp. 0027
-
-
Doncic, A.1
Ben-Jacob, E.2
Barkai, N.3
|