-
1
-
-
0027988827
-
Role of the rfe gene in the biosynthesis of the Escherichia coli O7-specific lipopolysaccharide and other O-specific polysaccharides containing N-acetylglucosamine
-
Alexander DC & Valvano MA (1994) Role of the rfe gene in the biosynthesis of the Escherichia coli O7-specific lipopolysaccharide and other O-specific polysaccharides containing N-acetylglucosamine. J Bacteriol 176: 7079-7084.
-
(1994)
J Bacteriol
, vol.176
, pp. 7079-7084
-
-
Alexander, D.C.1
Valvano, M.A.2
-
2
-
-
0033983398
-
Serotype-converting bacteriophages and O-antigen modification in Shigella flexneri
-
Allison GE & Verma NK (2000) Serotype-converting bacteriophages and O-antigen modification in Shigella flexneri. Trends Microbiol 8: 17-23.
-
(2000)
Trends Microbiol
, vol.8
, pp. 17-23
-
-
Allison, G.E.1
Verma, N.K.2
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST
-
Nucleic Acids Res
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W & Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3398-3402.
-
(1997)
a new generation of protein database search programs
, vol.25
, pp. 3398-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0028818689
-
Sequence and analysis of the O antigen gene (rfb) cluster of Escherichia coli O111
-
Bastin DA & Reeves PR (1995) Sequence and analysis of the O antigen gene (rfb) cluster of Escherichia coli O111. Gene 164: 17-23.
-
(1995)
Gene
, vol.164
, pp. 17-23
-
-
Bastin, D.A.1
Reeves, P.R.2
-
5
-
-
0011542799
-
The Pfam protein families database
-
Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M & Sonnhammer EL (2002) The Pfam protein families database. Nucleic Acids Res 30: 276-280.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.10
-
6
-
-
1942468847
-
Lipopolysaccharide O antigen status of Yersinia enterocolitica O:8 is essential for virulence and absence of O antigen affects the expression of other Yersinia virulence factors
-
Bengoechea JA, Najdenski H & Skurnik M (2004) Lipopolysaccharide O antigen status of Yersinia enterocolitica O:8 is essential for virulence and absence of O antigen affects the expression of other Yersinia virulence factors. Mol Microbiol 52: 451-469.
-
(2004)
Mol Microbiol
, vol.52
, pp. 451-469
-
-
Bengoechea, J.A.1
Najdenski, H.2
Skurnik, M.3
-
7
-
-
34547130099
-
Carbon-13 nuclear magnetic resonance spectroscopy of monosaccharides
-
Bock K & Pedersen C (1983) Carbon-13 nuclear magnetic resonance spectroscopy of monosaccharides. Adv Carbohyd Chem Bi 41: 27-66.
-
(1983)
Adv Carbohyd Chem Bi
, vol.41
, pp. 27-66
-
-
Bock, K.1
Pedersen, C.2
-
8
-
-
33751515359
-
Characterization of E. coli O24 and O56 O antigen gene clusters reveals a complex evolutionary history of the O24 gene cluster
-
Cheng J, Wang Q, Wang W, Wang Y, Wang L & Feng L (2006) Characterization of E. coli O24 and O56 O antigen gene clusters reveals a complex evolutionary history of the O24 gene cluster. Curr Microbiol 53: 470-476.
-
(2006)
Curr Microbiol
, vol.53
, pp. 470-476
-
-
Cheng, J.1
Wang, Q.2
Wang, W.3
Wang, Y.4
Wang, L.5
Feng, L.6
-
9
-
-
0001673784
-
Methylation of carbohydrates with methyl iodide in dimethyl sulfoxide in the presence of methylsulfinylanion
-
Conrad HE (1972) Methylation of carbohydrates with methyl iodide in dimethyl sulfoxide in the presence of methylsulfinylanion. Methods Carbohydr Chem 6: 361-364.
-
(1972)
Methods Carbohydr Chem
, vol.6
, pp. 361-364
-
-
Conrad, H.E.1
-
10
-
-
0031745263
-
Overexpression and topology of the Shigella flexneri O-antigen polymerase (Rfc/Wzy)
-
Daniels C, Vindurampulle C & Morona R (1998) Overexpression and topology of the Shigella flexneri O-antigen polymerase (Rfc/Wzy). Mol Microbiol 28: 1211-1222.
-
(1998)
Mol Microbiol
, vol.28
, pp. 1211-1222
-
-
Daniels, C.1
Vindurampulle, C.2
Morona, R.3
-
11
-
-
35348839697
-
Multiplex, bead-based suspension array for molecular determination of common Salmonella serogroups
-
Fitzgerald C, Collins M, van Duyne S, Mikoleit M, Brown T & Fields P (2007) Multiplex, bead-based suspension array for molecular determination of common Salmonella serogroups. J Clin Microbiol 45: 3323-3334.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 3323-3334
-
-
Fitzgerald, C.1
Collins, M.2
van Duyne, S.3
Mikoleit, M.4
Brown, T.5
Fields, P.6
-
12
-
-
0028875589
-
A novel GDP-mannose mannosyl hydrolase shares homology with the MutT family of enzymes
-
Frick DN, Townsend BD & Bessman MJ (1995) A novel GDP-mannose mannosyl hydrolase shares homology with the MutT family of enzymes. J Biol Chem 270: 24086-24091.
-
(1995)
J Biol Chem
, vol.270
, pp. 24086-24091
-
-
Frick, D.N.1
Townsend, B.D.2
Bessman, M.J.3
-
13
-
-
0032502771
-
The assembly system for the lipopolysaccharide R2 core-type of Escherichia coli is a hydrid of those found in Escherichia coli K-12 and Salmonella enterica
-
Heinrichs DE, Monteiro MAM, Perry MB & Whitfield C (1998) The assembly system for the lipopolysaccharide R2 core-type of Escherichia coli is a hydrid of those found in Escherichia coli K-12 and Salmonella enterica. J Biol Chem 273: 8849-8859.
-
(1998)
J Biol Chem
, vol.273
, pp. 8849-8859
-
-
Heinrichs, D.E.1
Monteiro, M.A.M.2
Perry, M.B.3
Whitfield, C.4
-
14
-
-
77953603459
-
Structural and genetic evidence for the close relationship between Escherichia coli O71 and Salmonella enterica O28 O-antigens
-
Hu B, Perepelov AV, Liu B, Shevelev SD, Guo D, Senchenkova SN, Shashkov AS, Feng L, Knirel YA & Wang L (2010) Structural and genetic evidence for the close relationship between Escherichia coli O71 and Salmonella enterica O28 O-antigens. FEMS Immunol Med Mic 59: 161-169.
-
(2010)
FEMS Immunol Med Mic
, vol.59
, pp. 161-169
-
-
Hu, B.1
Perepelov, A.V.2
Liu, B.3
Shevelev, S.D.4
Guo, D.5
Senchenkova, S.N.6
Shashkov, A.S.7
Feng, L.8
Knirel, Y.A.9
Wang, L.10
-
15
-
-
37049083201
-
Nuclear magnetic resonance and conformational studies on monoacetylated methyl d-gluco- and d-galacto-pyranosides
-
Jansson P-E, Kenne L & Schweda E (1987) Nuclear magnetic resonance and conformational studies on monoacetylated methyl d-gluco- and d-galacto-pyranosides. J Chem Soc Perkin T 1: 377-383.
-
(1987)
J Chem Soc Perkin T
, vol.1
, pp. 377-383
-
-
Jansson, P.-E.1
Kenne, L.2
Schweda, E.3
-
16
-
-
0011643588
-
Determination of the absolute configuration of sugars by gas-liquid chromatography of their acetylated 2-octyl glycosides
-
Leontein K & Lönngren J (1993) Determination of the absolute configuration of sugars by gas-liquid chromatography of their acetylated 2-octyl glycosides. Methods Carbohydr Chem 9: 87-89.
-
(1993)
Methods Carbohydr Chem
, vol.9
, pp. 87-89
-
-
Leontein, K.1
Lönngren, J.2
-
18
-
-
44849115365
-
Structure and genetics of Shigella O antigens
-
Liu B, Knirel YA, Feng L, Perepelov AV, Senchenkova SN, Wang Q, Reeves PR & Wang L (2008) Structure and genetics of Shigella O antigens. FEMS Microbiol Rev 32: 627-653.
-
(2008)
FEMS Microbiol Rev
, vol.32
, pp. 627-653
-
-
Liu, B.1
Knirel, Y.A.2
Feng, L.3
Perepelov, A.V.4
Senchenkova, S.N.5
Wang, Q.6
Reeves, P.R.7
Wang, L.8
-
19
-
-
77953210133
-
Structure of the O-antigen of Salmonella O66 and the genetic basis for similarity and differences between the closely related O-antigens of Escherichia coli O166 and Salmonella O66
-
Liu B, Perepelov AV, Li D, Senchenkova SN, Han Y, Shashkov AS, Feng L, Knirel YA & Wang L (2010a) Structure of the O-antigen of Salmonella O66 and the genetic basis for similarity and differences between the closely related O-antigens of Escherichia coli O166 and Salmonella O66. Microbiology 156: 1642-1649.
-
(2010)
Microbiology
, vol.156
, pp. 1642-1649
-
-
Liu, B.1
Perepelov, A.V.2
Li, D.3
Senchenkova, S.N.4
Han, Y.5
Shashkov, A.S.6
Feng, L.7
Knirel, Y.A.8
Wang, L.9
-
20
-
-
77952797213
-
Genetic and structural relationships of Salmonella O55 and Escherichia coli O103 O-antigens and identification of a 3-hydroxybutanoyltransferase gene involved in the synthesis of a Fuc3N derivative
-
Liu B, Perepelov AV, Svensson MV et al. (2010b) Genetic and structural relationships of Salmonella O55 and Escherichia coli O103 O-antigens and identification of a 3-hydroxybutanoyltransferase gene involved in the synthesis of a Fuc3N derivative. Glycobiology 20: 679-688.
-
(2010)
Glycobiology
, vol.20
, pp. 679-688
-
-
Liu, B.1
Perepelov, A.V.2
Svensson, M.V.3
-
22
-
-
0003796783
-
Escherichia and Salmonella Typhimurium: Cellular and Molecular Biology
-
amp; () American Society for Microbiology, Washington, DC.
-
Neidhardt FC, Ingraham JL, Magasanik B, Schaechter M & Umbarger HE (1987) Escherichia and Salmonella Typhimurium: Cellular and Molecular Biology. American Society for Microbiology, Washington, DC.
-
(1987)
-
-
Neidhardt, F.1
C.Ingraham, J.L.2
Magasanik, B.3
Schaechter, M.4
Umbarger, H.E.5
-
24
-
-
78349253906
-
Structural and genetic characterization of the closely related O-antigens of Escherichia coli O85 and Salmonella enterica O17
-
DOI: DOI: 10.1177/1753425910369270.
-
Perepelov AV, Li D, Liu B, Senchenkova SN, Guo D, Shashkov AS, Feng L, Knirel YA & Wang L (2010a) Structural and genetic characterization of the closely related O-antigens of Escherichia coli O85 and Salmonella enterica O17. Innate Immun, DOI: DOI: 10.1177/1753425910369270.
-
(2010)
Innate Immun
-
-
Perepelov, A.V.1
Li, D.2
Liu, B.3
Senchenkova, S.N.4
Guo, D.5
Shashkov, A.S.6
Feng, L.7
Knirel, Y.A.8
Wang, L.9
-
25
-
-
77949568448
-
Relatedness of the O-polysaccharide structures of Escherichia coli O123 and Salmonella enterica O58, both containing 4,6-dideoxy-4-{N-[(S)-3-hydroxybutanoyl]-d-alanyl}amino-d-glucose; revision of the E. coli O123 O-polysaccharide structure
-
Perepelov AV, Liu B, Shevelev SD, Senchenkova SN, Shashkov AS, Feng L, Knirel YA & Wang L (2010b) Relatedness of the O-polysaccharide structures of Escherichia coli O123 and Salmonella enterica O58, both containing 4, 6-dideoxy-4-{N-[(S)-3-hydroxybutanoyl]-d-alanyl}amino-d-glucose; revision of the E. coli O123 O-polysaccharide structure. Carbohyd Res 345: 825-829.
-
(2010)
Carbohyd Res
, vol.345
, pp. 825-829
-
-
Perepelov, A.V.1
Liu, B.2
Shevelev, S.D.3
Senchenkova, S.N.4
Shashkov, A.S.5
Feng, L.6
Knirel, Y.A.7
Wang, L.8
-
26
-
-
0027121374
-
Variation in O antigens, niche specific selection and bacterial populations
-
Reeves PR (1992) Variation in O antigens, niche specific selection and bacterial populations. FEMS Microbiol Lett 100: 509-516.
-
(1992)
FEMS Microbiol Lett
, vol.100
, pp. 509-516
-
-
Reeves, P.R.1
-
27
-
-
0005776718
-
Studies on the chemical basis of the phage conversion of O-antigens in the E-group Salmonella
-
Robbins PW & Uchida T (1962) Studies on the chemical basis of the phage conversion of O-antigens in the E-group Salmonella. Biochemistry 1: 323-335.
-
(1962)
Biochemistry
, vol.1
, pp. 323-335
-
-
Robbins, P.W.1
Uchida, T.2
-
28
-
-
0033635022
-
Artemis
-
Bioinformatics
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA & Barrell B (2000) Artemis: sequence visualisation and annotation. Bioinformatics 16: 944-945.
-
(2000)
sequence visualisation and annotation
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
30
-
-
4544295723
-
Relationships of the Escherichia coli O157, O111, and O55 O-antigen gene clusters with those of Salmonella enterica and Citrobacter freundii, which express identical O antigens
-
Samuel G, Hogbin JP, Wang L & Reeves PR (2004) Relationships of the Escherichia coli O157, O111, and O55 O-antigen gene clusters with those of Salmonella enterica and Citrobacter freundii, which express identical O antigens. J Bacteriol 186: 6536-6543.
-
(2004)
J Bacteriol
, vol.186
, pp. 6536-6543
-
-
Samuel, G.1
Hogbin, J.P.2
Wang, L.3
Reeves, P.R.4
-
31
-
-
0026002819
-
Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium
-
J Mol Evol
-
Sharp PM (1991) Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution. J Mol Evol 33: 23-33.
-
(1991)
codon usage, map position, and concerted evolution
, vol.33
, pp. 23-33
-
-
Sharp, P.M.1
-
32
-
-
0033571078
-
Structural elucidation of the O-antigenic polysaccharides from Escherichia coli O21 and the enteroaggregative Escherichia coli strain 105
-
Staaf M, Urbina F, Weintraub A & Widmalm G (1999) Structural elucidation of the O-antigenic polysaccharides from Escherichia coli O21 and the enteroaggregative Escherichia coli strain 105. Eur J Biochem 266: 241-245.
-
(1999)
Eur J Biochem
, vol.266
, pp. 241-245
-
-
Staaf, M.1
Urbina, F.2
Weintraub, A.3
Widmalm, G.4
-
33
-
-
0030158571
-
The Staden sequence analysis package
-
Staden R (1996) The Staden sequence analysis package. Mol Biotechnol 5: 233-241.
-
(1996)
Mol Biotechnol
, vol.5
, pp. 233-241
-
-
Staden, R.1
-
34
-
-
0035162592
-
The COG database
-
Nucleic Acids Res
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND & Koonin EV (2001) The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 29: 22-28.
-
(2001)
new developments in phylogenetic classification of proteins from complete genomes
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
35
-
-
0031824601
-
Organization of Escherichia coli O157 O antigen gene cluster and identification of its specific genes
-
Wang L & Reeves PR (1998) Organization of Escherichia coli O157 O antigen gene cluster and identification of its specific genes. Infect Immun 66: 3545-3551.
-
(1998)
Infect Immun
, vol.66
, pp. 3545-3551
-
-
Wang, L.1
Reeves, P.R.2
-
36
-
-
0036235620
-
The O-antigen gene cluster of Escherichia coli O55:H7 and identification of a new UDP-GlcNAc C4 epimerase gene
-
Wang L, Huskic S, Cisterne A, Rothemund D & Reeves PR (2002) The O-antigen gene cluster of Escherichia coli O55:H7 and identification of a new UDP-GlcNAc C4 epimerase gene. J Bacteriol 184: 2620-2625.
-
(2002)
J Bacteriol
, vol.184
, pp. 2620-2625
-
-
Wang, L.1
Huskic, S.2
Cisterne, A.3
Rothemund, D.4
Reeves, P.R.5
-
37
-
-
34447522097
-
A group of Escherichia coli and Salmonella enterica O antigens sharing a common backbone structure
-
Wang W, Perepelov AV, Feng L et al. (2007) A group of Escherichia coli and Salmonella enterica O antigens sharing a common backbone structure. Microbiology 153: 2159-2167.
-
(2007)
Microbiology
, vol.153
, pp. 2159-2167
-
-
Wang, W.1
Perepelov, A.V.2
Feng, L.3
-
38
-
-
20044379025
-
Optimization of virulence functions through glucosylation of Shigella LPS
-
West NP, Sansonetti P, Mounier J et al. (2005) Optimization of virulence functions through glucosylation of Shigella LPS. Science 307: 1313-1317.
-
(2005)
Science
, vol.307
, pp. 1313-1317
-
-
West, N.P.1
Sansonetti, P.2
Mounier, J.3
-
39
-
-
0002447206
-
Bacterial lipopolysaccharides. Extraction with phenol-water and further applications of the procedure
-
Westphal O & Jann K (1965) Bacterial lipopolysaccharides. Extraction with phenol-water and further applications of the procedure. Methods Carbohydr Chem 5: 83-91.
-
(1965)
Methods Carbohydr Chem
, vol.5
, pp. 83-91
-
-
Westphal, O.1
Jann, K.2
|