Genetic and structural relationships of Salmonella O55 and Escherichia coli O103 O-antigens and identification of a 3-hydroxybutanoyltransferase gene involved in the synthesis of a Fuc3N derivative

Glycobiology

Volumn 20, Issue 6, 2010, Pages 679-688

  Liu, Bin ^a   Perepelov, Andrei V ^b   Svensson, Mona V ^c   Shevelev, Sergei D ^b   Guo, Dan ^a   Senchenkova, Sof'ya N ^b   Shashkov, Alexander S ^b   Weintraub, Andrej ^d   Feng, Lu ^a   Widmalm, Göran ^c   Knirel, Yuriy A ^b   Wang, Lei ^a  

^a NANKAI UNIVERSITY   (China)

^b N D ZELINSKY INSTITUTE OF ORGANIC CHEMISTRY   (Russian Federation)

^c STOCKHOLM UNIVERSITY   (Sweden)

^d KAROLINSKA UNIVERSITY HOSPITAL   (Sweden)

Author keywords

Escherichia coli O103; Lipopolysaccharide; O antigen; O antigen gene cluster; Salmonella O55

Indexed keywords

3 AMINO 3,6 DIDEOXY DEXTRO GALACTOSE; 3 HYDROXYBUTYRIC ACID; ACYLTRANSFERASE; BACTERIAL PROTEIN; GLUCOSE; N ACETYLGALACTOSAMINE; N ACETYLGLUCOSAMINE; O ANTIGEN; UNCLASSIFIED DRUG;

ANTIGEN STRUCTURE; ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; CARBON NUCLEAR MAGNETIC RESONANCE; CHEMICAL ANALYSIS; CONTROLLED STUDY; ESCHERICHIA COLI; GENE CLUSTER; GENE IDENTIFICATION; GENE SEQUENCE; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC SIMILARITY; HETERONUCLEAR MULTIPLE BOND CORRELATION; HETERONUCLEAR MULTIPLE QUANTUM COHERENCE; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEOTIDE SEQUENCE; PHOTON CORRELATION SPECTROSCOPY; PLESIOMORPHY; PRIORITY JOURNAL; PROTEIN SYNTHESIS; PROTON NUCLEAR MAGNETIC RESONANCE; SALMONELLA; STRUCTURAL GENE;

ACYLTRANSFERASES; AMINO SUGARS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; O ANTIGENS; SALMONELLA;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA; SALMONELLA;

EID: 77952797213     PISSN: 09596658     EISSN: 14602423     Source Type: Journal    
DOI: 10.1093/glycob/cwq015     Document Type: Article

References (39)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res. 25:3398-3402.
2. Bastin DA, Reeves PR. 1995. Sequence and analysis of the O antigen gene (rfb) cluster of Escherichia coli O111. Gene. 164:17-23.
3. Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL. 2002. The Pfam Protein Families Database. Nucl Acids Res. 30:276-280.
4. Beutin L, Zimmermann S, Gleier K. 1998. Human infections with Shiga toxinproducing Escherichia coli other than serogroup O157 in Germany. Emerg Infect Dis. 4:635-639.
5. Caprioli A, Tozzi AE, Rizzoni G, Karch H. 1997. Non-O157 Shiga toxin-producing Escherichia coli infections in Europe. Emerg Infect Dis.3: 578-579.
6. 13C resolution in semi-selective HMBC: a band-selective, constant-time HMBC for complex organic structure elucidation by NMR. Org Biomol Chem. 1:3632-3634.
7. Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA. 97:6640-6645.
8. Dmitriev BA, Backinowsky LV, Knirel YA, L'vov VL, Kochetkov NK. 1974. Antigenic polysaccharides of bacteria. 1. Study of an acidic polysaccharide from Shigella boydii 6. Russ Chem Bull. 23:2248-2251.
9. Fratamico PM, DebRoy C, Strobaugh TP Jr, Chen CY. 2005. DNA sequence of the Escherichia coli O103 O antigen gene cluster and detection of enterohemorrhagic E. coli O103 by PCR amplication of the wzx and wzy genes. Can J Microbiol. 51:515-522.
10. 13Cn.m.r. data. Carbohydr Res. 188:169-191.
11. Jonsson KH, Weintraub A, Widmalm G. 2009. Structural determination of the O-antigenic polysaccharide from Escherichia coli O74. Carbohydr Res. 344:1592-1595.
12. 13C-enrichment and NMR spectroscopy. Biochemistry. 38:12205-12211.
13. Knirel YA, Senchenkova SN, Shashkov AS, Esteve C, Alcaide E, Merino S, Tomas JM. 2009. Structure of a polysaccharide from the lipopolysaccharide of Vibrio vulnificus CECT4602 containing 2-acetamido-2, 3, 6-trideoxy-3-[(S)-and (R)-3-hydroxybutanoylamino]-l-mannose. Carbohydr Res. 344:479-483.
14. Larsson EA, Urbina F, Yang Z, Weintraub A, Widmalm G. 2004. Structural and immunochemical relationship between the O-antigenic polysaccharides from the enteroaggregative Escherichia coli strain 396/C-1 and Escherichia coli O126. Carbohydr Res. 339:1491-1496.
15. Leontein K, Lönngren J. 1993. Determination of the absolute configuration of sugars by gas-liquid chromatography of their acetylated 2-octyl glycosides. Methods in Carbohydrate Chemistry. 9:87-89.
16. 13C-n.m.r. data. Carbohydr Res. 175:59-75.
17. Liu B, Knirel YA, Feng L, Perepelov AV, Senchenkova SN, Wang Q, Reeves PR, Wang L. 2008. Structure and genetics of Shigella O antigens. FEMS Microbiol Rev. 32:627-653.
18. Mead PS, Slutsker L, Dietz V, McCaig LF, Bresee JS, Shapiro C, Griffin PM, Tauxe RV. 1999. Food-related illness and death in the United States. Emerg Infect Dis. 5:607-625.
19. CH. J Am Chem Soc. 127:6154-6155.
20. Ochman H, Wilson AC. 1987. Evolutionary history of enteric bacteria. In: Neidhardt FC, editor. Escherichia coli and Salmonella typhimurium cellular and molecular biology. Washington, DC: American Society for Microbiology. p. 1649-1654.
21. T. J Biol Chem. 278:26410-26417.
22. Reeves PR. 1995. Role of O-antigen variation in the immune response. Trends Microbiol. 3:381-386.
23. Robbins PW, Uchida T. 1962. Studies on the chemical basis of the phage conversion of O-antigens in the E-group Salmonella. Biochemistry. 1:323-335.
24. Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B. 2000. Artemis: sequence visualisation and annotation. Bioinformatics. 16:944-945.
25. Samuel G, Hogbin JP, Wang L, Reeves PR. 2004. Relationships of the Escherichia coli O157, O111, and O55 O-antigen gene clusters with those of Salmonella enterica and Citrobacter freundii, which express identical O antigens. J Bacteriol. 186:6536-6543.
26. Sharp PM. 1991. Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution. J Mol Evol. 33:23-33.
27. Söderman P, Jansson PE, Widmalm G. 1998. Synthesis and NMR and conformational studies of the four anomeric methyl glycosides of the trisaccharide d-Glcp-(1→3)-[d-Glcp-(1→4)]-α-d-Glcp. J Chem Soc, Perkin Trans.2: 639-648.
28. Staden R. 1996. The Staden Sequence Analysis Package. Mol Biotech.5: 233-241.
29. Stenutz R, Weintraub A, Widmalm G. 2006. The structures of Escherichia coli O-polysaccharide antigens. FEMS Microbiol Rev. 30:382-403.
30. Tarr PI, Fouser LS, Stapleton AE, Wilson RA, Kim HH, Vary JCJr, Clausen CR. 1996. Hemolytic-uremic syndrome in a six-year-old girl after a urinary tract infection with Shiga-toxin-producing Escherichia coli O103:H2. N Engl J Med. 335:635-638.
31. Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV. 2001. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucl Acids Res. 29:22-28.
32. Wang L, Reeves PR. 1994. Involvement of the galactosyl-1-phosphate transferase encoded by the Salmonella enterica rfbP gene in O antigen subunit processing. J Bacteriol. 176:4348-4356.
33. Wang L, Reeves PR. 1998. Organization of Escherichia coli O157 O antigen gene cluster and identification of its specific genes. Infect Immun. 66: 3545-3551.
34. Wang Q, Perepelov AV, Feng L, Knirel YA, Li Y, Wang L. 2009. Genetic and structural analyses of Escherichia coli O107 and O117 O-antigens. FEMS Immunol Med Microbiol. 55:47-54.
35. Wang W, Perepelov AV, Feng L, Shevelev SD, Wang Q, Senchenkova SN, Han W, Li Y, Shashkov AS, Knirel YA, Reeves PR, Wang L. 2007. A group of Escherichia coli and Salmonella enterica O antigens sharing a common backbone structure. Microbiology. 153:2159-2167.
36. Westphal O, Jann K. 1965. Bacterial lipopolysaccharides. Extraction with phenol-water and further applications of the procedure. In: Whistler RL, editor. Methods in Carbohydr Chem 5. New York and London: Academic Press. p. 83-91.
37. Widmalm G. 2007. General NMR spectroscopy of carbohydrates and conformational analysis in solution. In: Kamerling JP, editor. Comprehensive glycoscience. Oxford: Elsevier. p. 101-132.
38. Yu D, Ellis HM, Lee EC, Jenkins NA, Copeland NG, Court DL. 2000. An efficient recombination system for chromosome engineering in Escherichia coli. Proc Natl Acad Sci USA. 91:5978-5983.
39. Zdorovenko EL, Zatonsky GV, Zdorovenko GM, Pasichnyk LA, Shashkov AS, Knirel YA. 2001. Structural heterogeneity in the lipopolysaccharides of Pseudomonas syringae with O-polysaccharide chains having different repeating units. Carbohydr Res. 336:329-336.