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Volumn 30, Issue 7, 2011, Pages 753-768

Elastic net-based framework for imaging mass spectrometry data biomarker selection and classification

Author keywords

Biomarker selection; Classification; Elastic net; Imaging mass spectrometry

Indexed keywords

BIOLOGICAL MARKER; CALCIUM BINDING PROTEIN; CYTOCHROME C OXIDASE; HISTONE H2A; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE;

EID: 79952586110     PISSN: 02776715     EISSN: 10970258     Source Type: Journal    
DOI: 10.1002/sim.4147     Document Type: Article
Times cited : (10)

References (40)
  • 1
  • 6
    • 35848970035 scopus 로고    scopus 로고
    • MALDI imaging mass spectrometry: molecular snapshots of biochemical systems
    • Cornett DS, Reyzer ML, Chaurand P, Caprioli RM. MALDI imaging mass spectrometry: molecular snapshots of biochemical systems. Nature Methods 2007; 4:828-833.
    • (2007) Nature Methods , vol.4 , pp. 828-833
    • Cornett, D.S.1    Reyzer, M.L.2    Chaurand, P.3    Caprioli, R.M.4
  • 7
    • 0035048372 scopus 로고    scopus 로고
    • Imaging mass spectrometry: a new technology for the analysis of protein expression in mammalian tissues
    • Stoeckli M, Chaurand P, Hallahan DE, Caprioli RM. Imaging mass spectrometry: a new technology for the analysis of protein expression in mammalian tissues. Nature Medicine 2001; 7:493-496.
    • (2001) Nature Medicine , vol.7 , pp. 493-496
    • Stoeckli, M.1    Chaurand, P.2    Hallahan, D.E.3    Caprioli, R.M.4
  • 10
    • 26444563501 scopus 로고    scopus 로고
    • Spatial and Spectral correlation in MALDI mass spectrometry images by clustering and multivariate analysis
    • McCombie G, Staab D, Stoeckli M, Knochenmuss R. Spatial and Spectral correlation in MALDI mass spectrometry images by clustering and multivariate analysis. Analytical Chemistry 2005; 77:6118-6124.
    • (2005) Analytical Chemistry , vol.77 , pp. 6118-6124
    • McCombie, G.1    Staab, D.2    Stoeckli, M.3    Knochenmuss, R.4
  • 11
    • 38449095009 scopus 로고    scopus 로고
    • Prospective exploration of biochemical tissue composition via imaging mass spectrometry guided by principal component analysis. Pacific Symposium on Biocomputing, Maui
    • Van de Plas R, Ojeda F, Dewil M, Van Den Bosch L, De Moor B, Waelkens E. Prospective exploration of biochemical tissue composition via imaging mass spectrometry guided by principal component analysis. Pacific Symposium on Biocomputing, Maui, vol. 12, 2007; 458-469.
    • (2007) , pp. 458-469
    • Van de Plas, R.1    Ojeda, F.2    Dewil, M.3    Van Den Bosch, L.4    De Moor, B.5    Waelkens, E.6
  • 12
  • 13
    • 45149121677 scopus 로고    scopus 로고
    • Matrix-assisted laser desorption/ionisation mass spectrometry imaging of lipids in rat brain tissue with integrated unsupervised and supervised multivariant statistical analysis
    • Trim PJ, Atkinson SJ, Princivalle AP, Marshall PS, West A. Matrix-assisted laser desorption/ionisation mass spectrometry imaging of lipids in rat brain tissue with integrated unsupervised and supervised multivariant statistical analysis. Rapid Communications in Mass Spectrometry 2008; 22:1503-1509.
    • (2008) Rapid Communications in Mass Spectrometry , vol.22 , pp. 1503-1509
    • Trim, P.J.1    Atkinson, S.J.2    Princivalle, A.P.3    Marshall, P.S.4    West, A.5
  • 14
    • 61349147183 scopus 로고    scopus 로고
    • MALDI imaging combined with hierarchical clustering as a new tool for the interpretation of complex human cancers
    • Deininger SO, Ebert MP, Futterer A, Gerhard M, Rocken C. MALDI imaging combined with hierarchical clustering as a new tool for the interpretation of complex human cancers. Journal of Proteomic Research 2008; 7(12):5230-5236.
    • (2008) Journal of Proteomic Research , vol.7 , Issue.12 , pp. 5230-5236
    • Deininger, S.O.1    Ebert, M.P.2    Futterer, A.3    Gerhard, M.4    Rocken, C.5
  • 15
    • 50849127829 scopus 로고    scopus 로고
    • Imaging mass spectrometry based exploration of biochemical tissue composition using peak intensity weighted PCA. Life Science Systems and Applications Workshop, LISA.IEEE/NIH, Bethesda, MD, 2007
    • Van de Plas R, De Moor B, Waelkens E. Imaging mass spectrometry based exploration of biochemical tissue composition using peak intensity weighted PCA. Life Science Systems and Applications Workshop, LISA.IEEE/NIH, Bethesda, MD, 2007; 209-212.
    • Van de Plas, R.1    De Moor, B.2    Waelkens, E.3
  • 17
    • 79952607304 scopus 로고    scopus 로고
    • Statistical classification and visualization of MALDI imaging data. CBMS'07, Maribor, Slovenia, 0-7695-2905-4/07.
    • Gerhard M, Deininger SO, Schleif FM. Statistical classification and visualization of MALDI imaging data. CBMS'07, Maribor, Slovenia, 2007; 0-7695-2905-4/07.
    • (2007)
    • Gerhard, M.1    Deininger, S.O.2    Schleif, F.M.3
  • 22
    • 1042290316 scopus 로고    scopus 로고
    • Protein profiling in brain tumors using mass spectrometry: feasibility of a new technique for the analysis of protein expression
    • Schwartz SA, Weil RJ, Johnson MD, Toms SA, Caprioli RM. Protein profiling in brain tumors using mass spectrometry: feasibility of a new technique for the analysis of protein expression. Clinical Cancer Research 2004; 10:981-987.
    • (2004) Clinical Cancer Research , vol.10 , pp. 981-987
    • Schwartz, S.A.1    Weil, R.J.2    Johnson, M.D.3    Toms, S.A.4    Caprioli, R.M.5
  • 25
    • 79952595273 scopus 로고    scopus 로고
    • Weighted elastic net model for mass spectrometry imaging processing
    • Hong D, Zhang F. Weighted elastic net model for mass spectrometry imaging processing. Mathematical Modelling Natural Phenomena 2010; 5(3):115-133.
    • (2010) Mathematical Modelling Natural Phenomena , vol.5 , Issue.3 , pp. 115-133
    • Hong, D.1    Zhang, F.2
  • 27
    • 79952590166 scopus 로고    scopus 로고
    • Handbook of Cancer Models with Applications to Cancer Screening, Cancer Treatment and Risk Assessment
    • Tan WY, Hannin L (eds). World Scientific Publication: Singapore
    • Hong D, Shyr Y. Mathematical framework and wavelets applications in proteomics for cancer study. In Handbook of Cancer Models with Applications to Cancer Screening, Cancer Treatment and Risk Assessment, Tan WY, Hannin L (eds). World Scientific Publication: Singapore, 2008; 471-499.
    • (2008) Mathematical framework and wavelets applications in proteomics for cancer study , pp. 471-499
    • Hong, D.1    Shyr, Y.2
  • 29
    • 49949090353 scopus 로고    scopus 로고
    • Penalized feature selection and classification in bioinformatics
    • Ma S, Huang J. Penalized feature selection and classification in bioinformatics. Brief Bioinformatics 2008; 9(5):392-403.
    • (2008) Brief Bioinformatics , vol.9 , Issue.5 , pp. 392-403
    • Ma, S.1    Huang, J.2
  • 30
    • 79952576359 scopus 로고    scopus 로고
    • SAM Version 1. 12: user's guide and technical document, Available from.
    • Chu G, Narasimhan B, Tibshirani R, Tusher VG. SAM Version 1. 12: user's guide and technical document, 2001. Available from.
    • (2001)
    • Chu, G.1    Narasimhan, B.2    Tibshirani, R.3    Tusher, V.G.4
  • 31
    • 84967551370 scopus 로고    scopus 로고
    • Quantitative Medical Data Analysis Using Math Tools and Statistical Techniques
    • Hong D, Shyr Y (eds). World Scientific Publications, LLC: Singapore
    • Hong D, Li HM, Li M, Shyr Y. Wavelets and projecting spectrum binning for proteomic data processing. In Quantitative Medical Data Analysis Using Math Tools and Statistical Techniques, Hong D, Shyr Y (eds). World Scientific Publications, LLC: Singapore, 2007; 159-178.
    • (2007) Wavelets and projecting spectrum binning for proteomic data processing , pp. 159-178
    • Hong, D.1    Li, H.M.2    Li, M.3    Shyr, Y.4
  • 32
    • 64549106080 scopus 로고    scopus 로고
    • Mitochondrial function and energy metabolism in cancer cells: past overview and future perspectives
    • Mayevsky A. Mitochondrial function and energy metabolism in cancer cells: past overview and future perspectives. Mitochondrion 2009; 9:165-179.
    • (2009) Mitochondrion , vol.9 , pp. 165-179
    • Mayevsky, A.1
  • 35
    • 33644856123 scopus 로고    scopus 로고
    • Epigenetic therapy of cancer: past, present and future
    • Yoo CB, Jones PA. Epigenetic therapy of cancer: past, present and future. Nature Reviews Drug Discovery 2006; 5:37-50.
    • (2006) Nature Reviews Drug Discovery , vol.5 , pp. 37-50
    • Yoo, C.B.1    Jones, P.A.2
  • 36
    • 42249098495 scopus 로고    scopus 로고
    • Histone tail modifications and noncanonical functions of histones: perspectives in cancer epigenetics
    • Hadnagy A, Beaulieu R, Balicki D. Histone tail modifications and noncanonical functions of histones: perspectives in cancer epigenetics. Molecular Cancer Therapeutics 2008; 7:740.
    • (2008) Molecular Cancer Therapeutics , vol.7 , pp. 740
    • Hadnagy, A.1    Beaulieu, R.2    Balicki, D.3
  • 37
    • 0028946165 scopus 로고
    • Human calgizzarin; one colorectal cancer related gene selected by a large scale random cDNA sequencing and Northern blot analysis
    • Tanaka M, Adzuma K, Iwami M, Yoshimoto K, Monden Y, Itakura M. Human calgizzarin; one colorectal cancer related gene selected by a large scale random cDNA sequencing and Northern blot analysis. Cancer Letters 1995; 89:195-200.
    • (1995) Cancer Letters , vol.89 , pp. 195-200
    • Tanaka, M.1    Adzuma, K.2    Iwami, M.3    Yoshimoto, K.4    Monden, Y.5    Itakura, M.6
  • 38
    • 33749347627 scopus 로고    scopus 로고
    • Quantitative assessment of telomerase activity and human telomerase reverse transcriptase messenger RNA levelsin pancreatic juice samples for the diagnosis of pancreatic cancer
    • Ohuchida K, Mizumoto K, Ogura Y, Ishikawa N, Nagai E, Yamaguchi K, Tanaka M. Quantitative assessment of telomerase activity and human telomerase reverse transcriptase messenger RNA levelsin pancreatic juice samples for the diagnosis of pancreatic cancer. Clinical Cancer Research 2006; 12:5417-5422.
    • (2006) Clinical Cancer Research , vol.12 , pp. 5417-5422
    • Ohuchida, K.1    Mizumoto, K.2    Ogura, Y.3    Ishikawa, N.4    Nagai, E.5    Yamaguchi, K.6    Tanaka, M.7
  • 40
    • 30344438839 scopus 로고    scopus 로고
    • Gene selection using support vector machines with non-convex penalty
    • Zhang HH, Ahn J, Lin X, Park C. Gene selection using support vector machines with non-convex penalty. Bioinformatics 2006; 22:88-95.
    • (2006) Bioinformatics , vol.22 , pp. 88-95
    • Zhang, H.H.1    Ahn, J.2    Lin, X.3    Park, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.