메뉴 건너뛰기




Volumn 27, Issue 6, 2011, Pages 853-859

Modular analysis of the probabilistic genetic interaction network

Author keywords

[No Author keywords available]

Indexed keywords

SACCHAROMYCES CEREVISIAE;

EID: 79952581633     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr031     Document Type: Article
Times cited : (9)

References (33)
  • 1
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner,M. et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 2
    • 43249117094 scopus 로고    scopus 로고
    • Functional maps of protein complexes from quantitative genetic interaction data
    • Bandyopadhyay,S. et al. (2008) Functional maps of protein complexes from quantitative genetic interaction data. PLoS Comput. Biol., 4, e1000065.
    • (2008) PLoS Comput. Biol. , vol.4
    • Bandyopadhyay, S.1
  • 3
    • 0037084028 scopus 로고    scopus 로고
    • Role of the ubiquitin-selective CDC48 (UFD1/NPL4) chaperone (segregase) in ERAD of OLE1 and other substrates
    • Braun,S. et al. (2002) Role of the ubiquitin-selective CDC48 (UFD1/NPL4) chaperone (segregase) in ERAD of OLE1 and other substrates. EMBO J., 21, 615-621.
    • (2002) EMBO J. , vol.21 , pp. 615-621
    • Braun, S.1
  • 4
    • 33751255087 scopus 로고    scopus 로고
    • Evaluation of clustering algorithms for proteinprotein interaction networks
    • Brohee,S. and van Helden,J. (2006) Evaluation of clustering algorithms for proteinprotein interaction networks. BMC Bioinformatics, 7, 488.
    • (2006) BMC Bioinformatics , vol.7 , pp. 488
    • Brohee, S.1    van Helden, J.2
  • 5
    • 0037382865 scopus 로고    scopus 로고
    • Translational control by TOR and TAP42 through dephosphorylation of eIF2alpha kinase GCN2
    • Cherkasova,V.A. and Hinnebusch,A.G. (2003) Translational control by TOR and TAP42 through dephosphorylation of eIF2alpha kinase GCN2. Genes Dev., 17, 859-872.
    • (2003) Genes Dev. , vol.17 , pp. 859-872
    • Cherkasova, V.A.1    Hinnebusch, A.G.2
  • 6
    • 33747367151 scopus 로고    scopus 로고
    • A strategy for extracting and analyzing large-scale quantitative epistatic interaction data
    • Collins,S.R. et al. (2006) A strategy for extracting and analyzing large-scale quantitative epistatic interaction data. Genome Biol., 7, R63.
    • (2006) Genome Biol. , vol.7
    • Collins, S.R.1
  • 7
    • 34147121646 scopus 로고    scopus 로고
    • Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
    • Collins,S.R. et al. (2007a) Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae. Mol. Cell. Proteomics, 6, 439-450.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 439-450
    • Collins, S.R.1
  • 8
    • 34147217542 scopus 로고    scopus 로고
    • Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map
    • Collins,S.R. et al. (2007b) Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature, 446, 806-810.
    • (2007) Nature , vol.446 , pp. 806-810
    • Collins, S.R.1
  • 9
    • 75649111192 scopus 로고    scopus 로고
    • The genetic landscape of a cell
    • Costanzo,M. et al. (2010) The genetic landscape of a cell. Science, 327, 425-431.
    • (2010) Science , vol.327 , pp. 425-431
    • Costanzo, M.1
  • 10
    • 73349095048 scopus 로고    scopus 로고
    • Systematic mapping of genetic interaction networks
    • Dixon,S.J. et al. (2009) Systematic mapping of genetic interaction networks. Annu. Rev. Genet., 43, 601-625.
    • (2009) Annu. Rev. Genet. , vol.43 , pp. 601-625
    • Dixon, S.J.1
  • 11
    • 61349119934 scopus 로고    scopus 로고
    • Functional organization of the S. cerevisiae phosphorylation network
    • Fiedler,D. et al. (2009) Functional organization of the S. cerevisiae phosphorylation network. Cell, 136, 952-963.
    • (2009) Cell , vol.136 , pp. 952-963
    • Fiedler, D.1
  • 12
    • 0035937505 scopus 로고    scopus 로고
    • Intracellular functions of N-linked glycans
    • Helenius,A. and Aebi,M. (2001) Intracellular functions of N-linked glycans. Science, 291, 2364-2369.
    • (2001) Science , vol.291 , pp. 2364-2369
    • Helenius, A.1    Aebi, M.2
  • 13
    • 63449128473 scopus 로고    scopus 로고
    • Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum
    • Jonikas,M.C. et al. (2009) Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum. Science, 323, 1693-1697.
    • (2009) Science , vol.323 , pp. 1693-1697
    • Jonikas, M.C.1
  • 14
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • Kanehisa,M. and Goto,S. (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res., 28, 27-30.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 15
    • 22844450110 scopus 로고    scopus 로고
    • Systematic interpretation of genetic interactions using protein networks
    • Kelley,R. and Ideker,T. (2005) Systematic interpretation of genetic interactions using protein networks. Nat. Biotechnol., 23, 561-566.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 561-566
    • Kelley, R.1    Ideker, T.2
  • 16
    • 0037174671 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in Saccharomyces cerevisiae
    • Lee,T.I. et al. (2002) Transcriptional regulatory networks in Saccharomyces cerevisiae. Science, 298, 799-804.
    • (2002) Science , vol.298 , pp. 799-804
    • Lee, T.I.1
  • 17
    • 9444239213 scopus 로고    scopus 로고
    • A probabilistic functional network of yeast genes
    • Lee,I. et al. (2004) A probabilistic functional network of yeast genes. Science, 306, 1555-1558.
    • (2004) Science , vol.306 , pp. 1555-1558
    • Lee, I.1
  • 18
    • 0029664530 scopus 로고    scopus 로고
    • The SAP, a new family of proteins, associate and function positively with the SIT4 phosphatase
    • Luke,M.M. et al. (1996) The SAP, a new family of proteins, associate and function positively with the SIT4 phosphatase. Mol. Cell. Biol., 16, 2744-2755.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 2744-2755
    • Luke, M.M.1
  • 19
    • 38549170927 scopus 로고    scopus 로고
    • MIPS: analysis and annotation of genome information in 2007
    • Mewes, H.W. et al. (2008) MIPS: analysis and annotation of genome information in 2007. Nucleic Acids Res., 36, D196-D201.
    • (2008) Nucleic Acids Res. , vol.36
    • Mewes, H.W.1
  • 20
    • 54249107599 scopus 로고    scopus 로고
    • Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast
    • Roguev, A. et al. (2008) Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Science, 322, 405-410.
    • (2008) Science , vol.322 , pp. 405-410
    • Roguev, A.1
  • 21
    • 26844489762 scopus 로고    scopus 로고
    • Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile
    • Schuldiner, M. et al. (2005) Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile. Cell, 123, 507-519.
    • (2005) Cell , vol.123 , pp. 507-519
    • Schuldiner, M.1
  • 22
    • 33645983211 scopus 로고    scopus 로고
    • Efficient algorithms for detecting signaling pathways in protein interaction networks
    • Scott, J. et al. (2006) Efficient algorithms for detecting signaling pathways in protein interaction networks. J. Comput. Biol., 13, 133-144.
    • (2006) J. Comput. Biol. , vol.13 , pp. 133-144
    • Scott, J.1
  • 23
    • 42949168427 scopus 로고    scopus 로고
    • A systems-level approach to mapping the telomere length maintenance gene circuitry
    • Shachar, R. et al. (2008) A systems-level approach to mapping the telomere length maintenance gene circuitry. Mol. Syst. Biol., 4, 172.
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 172
    • Shachar, R.1
  • 24
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • Shannon, P. et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res., 13, 2498-2504.
    • (2003) Genome Res. , vol.13 , pp. 2498-2504
    • Shannon, P.1
  • 25
    • 23844447959 scopus 로고    scopus 로고
    • Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data
    • Sharan, R. et al. (2005a) Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. J. Comput. Biol., 12, 835-846.
    • (2005) J. Comput. Biol. , vol.12 , pp. 835-846
    • Sharan, R.1
  • 26
    • 13844314048 scopus 로고    scopus 로고
    • Conserved patterns of protein interaction in multiple species
    • Sharan, R. et al. (2005b) Conserved patterns of protein interaction in multiple species. Proc. Natl Acad. Sci. USA, 102, 1974-1979.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 1974-1979
    • Sharan, R.1
  • 27
    • 75949120438 scopus 로고    scopus 로고
    • How and when should interactome-derived clusters be used to predict functional modules and protein function?
    • Song, J. and Singh, M. (2009) How and when should interactome-derived clusters be used to predict functional modules and protein function? Bioinformatics, 25, 3143-3150.
    • (2009) Bioinformatics , vol.25 , pp. 3143-3150
    • Song, J.1    Singh, M.2
  • 28
    • 0026078476 scopus 로고
    • The SIT4 protein phosphatase functions in late G1 for progression into S phase
    • Sutton, A. et al. (1991) The SIT4 protein phosphatase functions in late G1 for progression into S phase. Mol. Cell. Biol., 11, 2133-2148.
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 2133-2148
    • Sutton, A.1
  • 29
    • 10744230485 scopus 로고    scopus 로고
    • Global mapping of the yeast genetic interaction network
    • Tong, A.H. et al. (2004) Global mapping of the yeast genetic interaction network. Science, 303, 808-813.
    • (2004) Science , vol.303 , pp. 808-813
    • Tong, A.H.1
  • 30
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    • Uetz, P. et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature, 403, 623-627.
    • (2000) Nature , vol.403 , pp. 623-627
    • Uetz, P.1
  • 32
    • 56849094282 scopus 로고    scopus 로고
    • Agenetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing
    • Wilmes, G.M. et al. (2008)Agenetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing. Mol. Cell., 32, 735-746.
    • (2008) Mol. Cell. , vol.32 , pp. 735-746
    • Wilmes, G.M.1
  • 33
    • 62549145762 scopus 로고    scopus 로고
    • Toward accurate reconstruction of functional protein networks
    • Yosef, N. et al. (2009) Toward accurate reconstruction of functional protein networks. Mol. Syst. Biol., 5, 248.
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 248
    • Yosef, N.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.