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Volumn 7, Issue 2, 2011, Pages 209-220

Diversity of microorganisms isolated from the soil sample surround Chroogomphus rutilus in the Beijing region

Author keywords

16S rRNA; Chroogomphus rutilus; Isolation; ITS; Phylogenetic diversity

Indexed keywords

BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); BIONECTRIA; CHROOGOMPHUS RUTILUS; MORTIERELLA; MYCELIUM (GENUS); PENICILLIUM; PSEUDOMONAS; TRICHODERMA;

EID: 79952464269     PISSN: 14492288     EISSN: None     Source Type: Journal    
DOI: 10.7150/ijbs.7.209     Document Type: Article
Times cited : (21)

References (38)
  • 1
    • 79952480259 scopus 로고    scopus 로고
    • Proposal to conserve the name chroogomphus against brauniellula (Gomphidiaceae)
    • Aime M, Miller OK. Proposal to conserve the name Chroogomphus against Brauniellula (Gomphidiaceae). Taxon. 2005; 55(1):227-228.
    • (2005) Taxon , vol.55 , Issue.1 , pp. 227-228
    • Aime, M.1    Miller, O.K.2
  • 2
    • 79952469803 scopus 로고    scopus 로고
    • Phylogenetic and biogeographic relationships of chroogomphus species as inferred from molec-ular and morphological data
    • Li YC, Yang ZL, Tolgor B. Phylogenetic and biogeographic relationships of Chroogomphus species as inferred from molec-ular and morphological data. Fungal Divers. 2009; 38: 85-104
    • (2009) Fungal Divers , vol.38 , pp. 85-104
    • Li, Y.C.1    Yang, Z.L.2    Tolgor, B.3
  • 3
    • 0034935958 scopus 로고    scopus 로고
    • Cultivation of mushrooms of edible ectomycorrhizal fungi associated with Pinus densiflora by in vitro mycorrhizal synthesis
    • Yamada A, Ogura T, Ohmasa M. Cultivation of mushrooms of edible ectomycorrhizal fungi associated with Pinus densiflora by in vitro mycorrhizal synthesis. Mycorrhiza. 2001; 11 (2):59-66.
    • (2001) Mycorrhiza , vol.11 , Issue.2 , pp. 59-66
    • Yamada, A.1    Ogura, T.2    Ohmasa, M.3
  • 4
    • 79751493518 scopus 로고    scopus 로고
    • The ecological elementary research of chroogomphis rutillus
    • Dong HY, Hao C, Niu YR, et al. The ecological elementary research of Chroogomphis rutillus. Chinese Agricultural Science Bulletin. 2010; 26 (7): 191-194.
    • (2010) Chinese Agricultural Science Bulletin , vol.26 , Issue.7 , pp. 191-194
    • Dong, H.Y.1    Hao, C.2    Niu, Y.R.3
  • 5
    • 79952458661 scopus 로고    scopus 로고
    • Mycelium growth characters and culture medium formula screening of comphidius rutilus
    • Chen QJ, Cheng JH, Hao C, et al. Mycelium growth characters and culture medium formula screening of Comphidius rutilus. Chinese Agricultural Science Bulletin. 2010; 26 (3): 231-233.
    • (2010) Chinese Agricultural Science Bulletin , vol.26 , Issue.3 , pp. 231-233
    • Chen, Q.J.1    Cheng, J.H.2    Hao, C.3
  • 6
    • 79952476494 scopus 로고    scopus 로고
    • Analysis of fungal communi-ties present in Morchella growth soil using denaturing gradient gel electrophoresis
    • Shen H, Wang H, Zhao YC, et al. Analysis of fungal communi-ties present in Morchella growth soil using denaturing gradient gel electrophoresis. Acta Edulis Fungi. 2009; 16 (2): 10-12.
    • (2009) Acta Edulis Fungi , vol.16 , Issue.2 , pp. 10-12
    • Shen, H.1    Wang, H.2    Zhao, Y.C.3
  • 7
    • 0027095530 scopus 로고
    • Effects of substrate sterilization, fungicide treatment, and mycorrhization helper bacteria on ectomycorrhizal formation of pedunculate oak (Quercus robur) inoculated with laccaria laccata in two peat bare-root nurseries
    • Garbaye J, Churin JL, Duponnois R. Effects of substrate sterilization, fungicide treatment, and mycorrhization helper bacteria on ectomycorrhizal formation of pedunculate oak (Quercus robur) inoculated with Laccaria laccata in two peat bare-root nurseries. Biol Fertil Soils. 1992; 13:55-57.
    • (1992) Biol Fertil Soils , vol.13 , pp. 55-57
    • Garbaye, J.1    Churin, J.L.2    Duponnois, R.3
  • 8
    • 79952475627 scopus 로고    scopus 로고
    • PCR-DGGE identification of endophytes in Morels
    • Shen H, Chen MJ, Zhao YC, et al. PCR-DGGE identification of endophytes in Morels. Acta Agriculture Shanghai. 2008; 24 (2): 58-60.
    • (2008) Acta Agriculture Shanghai , vol.24 , Issue.2 , pp. 58-60
    • Shen, H.1    Chen, M.J.2    Zhao, Y.C.3
  • 10
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle JJ, Doyle JL. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 1987; 19: 11-15.
    • (1987) Phytochem Bull , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 11
    • 0027407714 scopus 로고
    • Phylogenetic analysis of the family rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer
    • Yanagi M, Yamasato K. Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer. FEMS Microbiol Lett. 1993; 107 (1): 115-120.
    • (1993) FEMS Microbiol Lett , vol.107 , Issue.1 , pp. 115-120
    • Yanagi, M.1    Yamasato, K.2
  • 12
    • 2142800594 scopus 로고    scopus 로고
    • Molecular evidence for novel planctomycete diversity in a municipal wastewater treatment plant
    • Chouari R, Le Paslier D, Daegelen P, et al. Molecular evidence for novel planctomycete diversity in a municipal wastewater treatment plant. Appl Environ Microbiol. 2003; 69 (12):7354-7363.
    • (2003) Appl Environ Microbiol , vol.69 , Issue.12 , pp. 7354-7363
    • Chouari, R.1    le Paslier, D.2    Daegelen, P.3
  • 13
    • 22744444875 scopus 로고    scopus 로고
    • Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester
    • Chouari R, Le Paslie D, Daegelen P, et al. Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester. Environ Microbiol. 2005; 7 (8):1104-1115.
    • (2005) Environ Microbiol , vol.7 , Issue.8 , pp. 1104-1115
    • Chouari, R.1    le Paslie, D.2    Daegelen, P.3
  • 14
    • 24944435502 scopus 로고    scopus 로고
    • An oligonu-cleotide barcode for species identification in Trichoderma and Hypocrea
    • Druzhinina IS, Kopchinskiy AG, Komon M, et al. An oligonu-cleotide barcode for species identification in Trichoderma and Hypocrea. Fungal Genet Biol. 2005; 42 (10): 813-828.
    • (2005) Fungal Genet Biol , vol.42 , Issue.10 , pp. 813-828
    • Druzhinina, I.S.1    Kopchinskiy, A.G.2    Komon, M.3
  • 16
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul SF, Gish W, Miller W, et al. Basic local alignment search tool. J Mol Biol. 1990; 215: 403-410.
    • (1990) J Mol Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3
  • 17
    • 0031574072 scopus 로고    scopus 로고
    • The clustal_X win-dows interface: Flexible strategies for multiple sequence alignement aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, et al. The clustal_X win-dows interface: flexible strategies for multiple sequence alignement aided by quality analysis tools. Nucleic Acid Res. 1997; 25: 4876-4882.
    • (1997) Nucleic Acid Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3
  • 18
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 1980; 16: 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 19
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987; 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 20
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, et al. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0. Mol Niol Evol. 2007; 24 (8): 1596-1599.
    • (2007) Mol Niol Evol , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3
  • 21
    • 0026822377 scopus 로고
    • Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: An example from the Compositaogy
    • Baldwin BG. Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: An example from the Compositaogy. Mol Phylogenet Evol. 1992; 1 (1): 3-16.
    • (1992) Mol Phylogenet Evol , vol.1 , Issue.1 , pp. 3-16
    • Baldwin, B.G.1
  • 22
    • 0036863728 scopus 로고    scopus 로고
    • Data bank of rDNA-ITS sequences from building-rot fungi for their identification
    • Schmidt O, Moreth U. Data bank of rDNA-ITS sequences from building-rot fungi for their identification. Wood Sci Technol. 2002; 36: 429-433.
    • (2002) Wood Sci Technol , vol.36 , pp. 429-433
    • Schmidt, O.1    Moreth, U.2
  • 23
    • 77950342059 scopus 로고    scopus 로고
    • Effect of monoculture soybean on soil microbial community in the Northeast China
    • Li CG, Li XM, Kong WD, et al. Effect of monoculture soybean on soil microbial community in the Northeast China. Plant Soil. 2010; 330(1-2):423-433.
    • (2010) Plant Soil , vol.330 , Issue.1-2 , pp. 423-433
    • Li, C.G.1    Li, X.M.2    Kong, W.D.3
  • 24
    • 0001664391 scopus 로고
    • Effect of pseudomonas putida on hyphal growth of agaricus bisporus
    • Rainey PB. Effect of Pseudomonas putida on hyphal growth of Agaricus bisporus. Mycol Res. 1991; 95: 699-704.
    • (1991) Mycol Res , vol.95 , pp. 699-704
    • Rainey, P.B.1
  • 25
    • 9944220498 scopus 로고    scopus 로고
    • Bacterial diversity in spent mushroom compost assessed by amplified rDNA restriction analysis and sequencing of cultivated isolates
    • Ntougias S, Zervakis G, Kavroulakis N, et al. Bacterial diversity in spent mushroom compost assessed by amplified rDNA restriction analysis and sequencing of cultivated isolates. System Appl Microbiol. 2004; 27 (6): 746-754.
    • (2004) System Appl Microbiol , vol.27 , Issue.6 , pp. 746-754
    • Ntougias, S.1    Zervakis, G.2    Kavroulakis, N.3
  • 26
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann RI, Ludwig W, Schleifer KH. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev. 1995; 59: 143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 27
    • 4644354371 scopus 로고    scopus 로고
    • Metagenomics - the key to the uncultured microbes
    • Streit WR, Schmitz RA. Metagenomics - the key to the uncultured microbes. Curr Opin Microbiol. 2004; 7(5):492-498.
    • (2004) Curr Opin Microbiol , vol.7 , Issue.5 , pp. 492-498
    • Streit, W.R.1    Schmitz, R.A.2
  • 28
    • 0018993949 scopus 로고
    • Distribution of heterotrophic aerobic microflora and specially denitrifying and free-living nitrogen-fixing bacteria in the rhizosphere of rice
    • Ruussos S, Garcia JL, Rinaudo G. Distribution of heterotrophic aerobic microflora and specially denitrifying and free-living nitrogen-fixing bacteria in the rhizosphere of rice. Ann Microbiol. 1980; 131 (2): 197-207.
    • (1980) Ann Microbiol , vol.131 , Issue.2 , pp. 197-207
    • Ruussos, S.1    Garcia, J.L.2    Rinaudo, G.3
  • 29
    • 69949150299 scopus 로고    scopus 로고
    • Interactions of bacillus spp. and plants - with special reference to induced systemic resistance (ISR)
    • Choudhary DK, Johri BN. Interactions of Bacillus spp. and plants - with special reference to induced systemic resistance (ISR). Microbiol Res. 2009; 164(5): 493-513.
    • (2009) Microbiol Res , vol.164 , Issue.5 , pp. 493-513
    • Choudhary, D.K.1    Johri, B.N.2
  • 30
    • 0013076169 scopus 로고
    • Effects of Bacillus macerans Fr. on growth of Pleurotus ostreatus (Jacq.:Fr.) Kumm
    • In: Elliott T.J., ed., Rotterdam: Balkema
    • Bis'ko NA, Bilay VT. Effects of Bacillus macerans Fr. on growth of Pleurotus ostreatus (Jacq.:Fr.) Kumm. In: Elliott T.J., ed. Science and Cultivation of Edible Fungi. Rotterdam: Balkema. 1995: 843-846.
    • (1995) Science and Cultivation of Edible Fungi , pp. 843-846
    • Bis'ko, N.A.1    Bilay, V.T.2
  • 31
    • 38849180207 scopus 로고    scopus 로고
    • Effect of pseudomonas sp. P7014 on the growth of edible mushroom pleurotus eryngii in bottle culture for commercial production
    • Kim MK, Math RK, Cho KM, et al. Effect of Pseudomonas sp. P7014 on the growth of edible mushroom Pleurotus eryngii in bottle culture for commercial production. Bioresour Technol. 2008; 99 (8): 3306-3308.
    • (2008) Bioresour Technol , vol.99 , Issue.8 , pp. 3306-3308
    • Kim, M.K.1    Math, R.K.2    Cho, K.M.3
  • 32
    • 7544239832 scopus 로고    scopus 로고
    • Induced systemic resistance and promotion of plant growth by Bacillus spp
    • Kloepper JW, Ryu CM, Zhang S. Induced systemic resistance and promotion of plant growth by Bacillus spp. Phytopathology. 2004; 94 (11):1259-1266.
    • (2004) Phytopathology , vol.94 , Issue.11 , pp. 1259-1266
    • Kloepper, J.W.1    Ryu, C.M.2    Zhang, S.3
  • 33
    • 0031735141 scopus 로고    scopus 로고
    • Role of exopolysaccharides of Rhizobium leguminosarum bv. viciae as host plant-specific molecules required for infection thread formation during nodulation of Vicia sativa
    • Van Workum WAT, Cremers H, Wijfjes AHM, et al. Role of exopolysaccharides of Rhizobium leguminosarum bv. viciae as host plant-specific molecules required for infection thread formation during nodulation of Vicia sativa. Mol Plant Microbe In. 1998;11 (12): 1233-1241.
    • (1998) Mol Plant Microbe In , vol.11 , Issue.12 , pp. 1233-1241
    • van Workum, W.A.T.1    Cremers, H.2    Wijfjes, A.H.M.3
  • 34
    • 0023138893 scopus 로고
    • Nitrogen fixation ability of exopolysaccharide synthesis mutants of Rhizobium sp. strain NGR234 and Rhizobium trifolii is restored by the addition of homologous exopolysaccharides
    • Djordjevic SP, Chen H, Batley M. Nitrogen fixation ability of exopolysaccharide synthesis mutants of Rhizobium sp. strain NGR234 and Rhizobium trifolii is restored by the addition of homologous exopolysaccharides. J Bacteriol. 1987; 169 (1): 53-60.
    • (1987) J Bacteriol , vol.169 , Issue.1 , pp. 53-60
    • Djordjevic, S.P.1    Chen, H.2    Batley, M.3
  • 35
    • 0022244485 scopus 로고
    • Rhizosphere bacteria and their use to increase plant productivity: A review
    • Gaskins MH, Albrecht SL and Hubbell DH. Rhizosphere bacteria and their use to increase plant productivity: A review. Agr Ecosyst Environ. 1985; 12 (2): 99-116.
    • (1985) Agr Ecosyst Environ , vol.12 , Issue.2 , pp. 99-116
    • Gaskins, M.H.1    Albrecht, S.L.2    Hubbell, D.H.3
  • 37
    • 37049036751 scopus 로고    scopus 로고
    • Entomopathogenic fungal endophytes
    • Vega FE, Posada F, Aime MC, et al. Entomopathogenic fungal endophytes. Biol Control. 2008; 46: 72-82.
    • (2008) Biol Control , vol.46 , pp. 72-82
    • Vega, F.E.1    Posada, F.2    Aime, M.C.3
  • 38
    • 77952837839 scopus 로고    scopus 로고
    • A review: Recent advances and future prospects of taxol-producing endophytic fungi
    • Zhou XW, Zhu HF, Liu L, et al. A review: recent advances and future prospects of taxol-producing endophytic fungi. Appl Microbiol Biotechnol. 2010; 86 (6):1707-1717.
    • (2010) Appl Microbiol Biotechnol , vol.86 , Issue.6 , pp. 1707-1717
    • Zhou, X.W.1    Zhu, H.F.2    Liu, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.