Towards a unified genetic map for diploid roses

Theoretical and Applied Genetics

Volumn 122, Issue 3, 2011, Pages 489-500

  Spiller, Monika ^a   Linde, Marcus ^a   Hibrand Saint Oyant, Laurence ^b   Tsai, Ching Jung ^c   Byrne, David H ^c   Smulders, Marinus J M ^d   Foucher, Fabrice ^b   Debener, Thomas ^a  

^a LEIBNIZ UNIVERSITY HANNOVER   (Germany)

^b CEMAGREF   (France)

^c TEXAS A AND M UNIVERSITY   (United States)

^d WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

BLACK SPOT; CONSENSUS MAP; EFFECTIVE POPULATION SIZE; GAP SIZE; GENETIC MAP; LINKAGE GROUPS; MARKER-ASSISTED SELECTION; MOLECULAR MARKER; ROSACEAE FAMILY; ROSE GENOME; SELECTIVE BREEDING; SELF-INCOMPATIBILITY; SYNTENY;

GENES; PLANTS (BOTANY);

POPULATION STATISTICS;

ARTICLE; CHROMOSOME MAP; DIPLOIDY; GENETIC LINKAGE; GENETICS; GENOTYPE; METHODOLOGY; PHENOTYPE; QUANTITATIVE TRAIT; ROSE;

CHROMOSOME MAPPING; DIPLOIDY; GENETIC LINKAGE; GENOTYPE; PHENOTYPE; QUANTITATIVE TRAIT, HERITABLE; ROSA;

ROSA; ROSACEAE; ROSOIDEAE;

EID: 79952450248     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1463-x     Document Type: Article

References (53)

1. Biber A, Kaufmann H, Linde M, Spiller M, Terefe D, Debener T (2010) Microsatellite markers from a BAC contig spanning the Rdr1 locus: a tool for marker assisted selection in roses. Theor Appl Genet 120: 765-773.
2. Brondani RPV, Williams ER, Brondani C, Grattapaglia D (2006) A microsatellite-based consensus linkage map for species of Eucalyptus and a novel set of 230 microsatellite markers for the genus. BMC Plant Biol 6: 20.
3. Byrne DH (2009) Genetics and genomics of Rosaceae, rose structural genomics. In: Folta KM, Gardiner SE (eds) Plant genetics and genomics: crops and models. Springer, Berlin, pp 357-383.
4. Cregan PB, Jarvik T, Bush AL, Shoemaker RC, Lark KG, Kahler AL, Kaya N, VanToai TT, Lohnes DG, Chung L, Specht JE (1999) An integrated genetic linkage map of the soybean genome. Crop Sci 39: 1464-1490.
5. Crespel L, Chirollet M, Durel CE, Zhang D, Meynet J, Gudin S (2002) Mapping of qualitative and quantitative phenotypic traits in Rosa using AFLP markers. Theor Appl Genet 105: 1207-1214.
6. Debener T, Mattiesch L (1999) Construction of a genetic linkage map for roses using RAPD and AFLP markers. Theor Appl Genet 99: 891-899.
7. Debener T, Linde M (2009) Exploring complex ornamental genomes: the rose as a model plant. Crit Rev Plant Sci 28: 267-280.
8. Debener T, Mattiesch L, Vosman B (2001) A molecular marker map for roses. Acta Hortic 547: 582-587.
9. Debener T, Bretzke M, Spiller M, Linde M, Kaufmann H, Berger RG, Krings U (2010) Genetic and molecular analyses of key loci involved in self incompatibility and floral scent in roses. Acta Hortic 870: 183-190.
10. Dirlewanger E, Graziano E, Joobeur T, Garriga-Caldere F, Cosson P, Howad W, Arus P (2004) Comparative mapping and marker-assisted selection in Rosaceae fruit crops. Proc Natl Acad Sci USA 101: 9891-9896.
11. Doligez A, Adam-Blondon AF, Cipriani G, Laucou V, Merdinoglu D, Meredith CP, Riaz S, Roux C, This P, Di Gaspero G (2006) An integrated SSR map of grapevine based on five mapping populations. Theor Appl Genet 113: 369-382.
12. Dugo ML, Satovic Z, Millan T, Cubero JI, Rubiales D, Cabrera A, Torres AM (2005) Genetic mapping of QTLs controlling horticultural traits in diploid roses. Theor Appl Genet 111: 511-520.
13. Ferreira A, da Silva MF, Silva LDCE, Cruz CD (2006) Estimating the effects of population size and type on the accuracy of genetic maps. Gen Mol Biol 29: 187-192.
14. Hattendorf A, Linde M, Kaufmann H, Debener T (2004) Genetic analysis of rose resistance genes and their localisation in the rose genome. Acta Hortic 651: 123-130.
15. Hess G, Scheuring D, Byrne D, Zhang D (2007) Towards positional cloning of the everblooming gene in plants: a BAC library of Rosa chinensis cv. Old Blush. Acta Hortic 751: 169-174.
16. Hibrand-Saint Oyant L, Crespel L, Rajapakse S, Zhang L, Foucher F (2008) Genetic linkage maps of rose constructed with new microsatellite markers and locating QTL controlling flowering traits. Tree Genet Genomes 4: 11-23.
17. Huhn M, Piepho HP (2008) A note on the bias of genetic distances in linkage maps based on small samples for backcrosses and intercrosses with complete dominance. Genome 51: 1054-1061.
18. Isobe S, Kolliker R, Hisano H, Sasamoto S, Wada T, Klimenko I, Okumura K, Tabata S (2009) Construction of a consensus linkage map for red clover (Trifolium pratense L.). BMC Plant Biol 9: 57.
19. Kaufmann H, Mattiesch L, Lorz H, Debener T (2003) Construction of a BAC library of Rosa rugosa Thunb. and assembly of a contig spanning Rdr1, a gene that confers resistance to black spot. Mol Genet Genomics 268: 666-674.
20. Kiani M, Zamani Z, Khalighi A, Fatahi R, Byrne DH (2008) Wide genetic diversity of Rosa damascena Mill. germplasm in Iran as revealed by RAPD analysis. Sci Hortic 115: 386-392.
21. Kitahara K, Matsumoto S (2000) Rose MADS-box genes 'MASAKO C1 and D1' homologous to class C floral identity genes. Plant Sci 151: 121-134.
22. Koning-Boucoiran CFS, Dolstra O, van der Linden CG, van der Schoot J, Gitonga VW, Verlinden K, Maliepaard CA, Krens FA (2009) Specific mapping of disease resistance genes in tetraploid cut roses. Acta Hortic 836: 137-142.
23. Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12: 172-175.
24. Linde M, Hattendorf A, Kaufmann H, Debener T (2006) Powdery mildew resistance in roses: QTL mapping in different environments using selective genotyping. Theor Appl Genet 113: 1081-1092.
25. Lombard V, Delourme R (2001) A consensus linkage map for rapeseed (Brassica napus L.): construction and integration of three individual maps from DH populations. Theor Appl Genet 103: 491-507.
26. Mace ES, Rami JF, Bouchet S, Klein PE, Klein RR, Kilian A, Wenzl P, Xia L, Halloran K, Jordan DR (2009) A consensus genetic map of sorghum that integrates multiple component maps and high-throughput Diversity Array Technology (DArT) markers. BMC Plant Biol 9: 13.
27. Mantovani P, van der Linden CG, Maccaferri M, Sanguineti MC, Tuberosa R (2006) Nucleotide-binding site (NBS) profiling of genetic diversity in durum wheat. Genome 49: 1473-1480.
28. Meynet J, Barrade R, Duclos A, Siadous R (1994) Dihaploid plants of roses (Rosa × hybrida, Cv Sonia) obtained by parthenogenesis induced using irradiated pollen and in vitro culture of immature seeds. Agronomie 14: 169-175.
29. Mibus H, Serek M (2005) An easy PCR method to isolate unknown ACC synthase genes in ornamental plant species. Acta Hortic 682: 307-312.
30. N'Diaye A, van de Weg WE, Kodde LP, Koller B, Dunemann F, Thiermann M, Tartarini S, Gennari F, Durel CE (2008) Construction of an integrated consensus map of the apple genome based on four mapping populations. Tree Genet Genomes 4: 727-743.
31. Orita M, Suzuki Y, Sekiya T, Hayashi K (1989) Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain-reaction. Genomics 5: 874-879.
32. Pelgas B, Beauseigle S, Achere V, Jeandroz S, Bousquet J, Isabel N (2006) Comparative genome mapping among Picea glauca, P. mariana × P. rubens and P. abies, and correspondence with other Pinaceae. Theor Appl Genet 113: 1371-1393.
33. Rajapakse S, Byrne DH, Zhang L, Anderson N, Arumuganathan K, Ballard RE (2001) Two genetic linkage maps of tetraploid roses. Theor Appl Genet 103: 575-583.
34. Remay A, Lalanne D, Thouroude T, Le CF, Hibrand-Saint Oyant L, Foucher F (2009) A survey of flowering genes reveals the role of gibberellins in floral control in rose. Theor Appl Genet 119: 767-781.
35. Saal B, Wricke G (2002) Clustering of amplified fragment length polymorphism markers in a linkage map of rye. Plant Breed 121: 117-123.
36. Sargent DJ, Cipriani G, Vilanova S, Gil-Ariza D, Arús P, Simpson DW, Tobutt KR, Monfort A (2008) The development of a bin mapping population and the selective mapping of 103 markers in the diploid Fragaria reference mapping population FV×FN. Genome 51: 120-127.
37. Sargent DJ, Marchese A, Simpson DW, Howad W, Fernandez-Fernandez F, Monfort A, Arus P, Evans KM, Tobutt KR (2009) Development of "universal" gene-specific markers from Malus spp. cDNA sequences, their mapping and use in synteny studies within Rosaceae. Tree Genet Genomes 5: 133-145.
38. Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 18: 233-234.
39. Sewell MM, Sherman BK, Neale DB (1999) A consensus map for loblolly pine (Pinus taeda L.). I. Construction and integration of individual linkage maps from two outbred three-generation pedigrees. Genetics 151: 321-330.
40. Shupert DA, Byrne DH, Pemberton HB (2007) Inheritance of flower traits, leaflet number and prickles in roses. Acta Hortic 751: 331-335.
41. Spiller M, Berger RG, Debener T (2010) Genetic dissection of scent metabolic profiles in diploid rose populations. Theor Appl Genet 120: 1461-1471.
42. Stam P (1993) Construction of integrated genetic-linkage maps by means of a new computer package-Joinmap. Plant J 3: 739-744.
43. Terefe D, Debener T (2010) An SSR from the LRR region of the rose Rdr1 gene family is a useful RGA marker for roses and other Rosaceae. Plant Breed. doi: 10. 1111/j. 1439-0523. 2010. 01780.
44. van der Linden CG, Wouters DCAE, Mihalka V, Kochieva EZ, Smulders MJM, Vosman B (2004) Efficient targeting of plant disease resistance loci using NBS profiling. Theor Appl Genet 109: 384-393.
45. van Ooijen JW (2006) JoinMap 4, Software for the calculation of genetic linkage maps in experimental populations. Kyazma B. V, Wageningen.
46. Vezzulli S, Troggio M, Coppola G, Jermakow A, Cartwright D, Zharkikh A, Stefanini M, Grando MS, Viola R, Adam-Blondon AF, Thomas M, This P, Velasco R (2008) A reference integrated map for cultivated grapevine (Vitis vinifera L.) from three crosses, based on 283 SSR and 501 SNP-based markers. Theor Appl Genet 117: 499-511.
47. Vilanova S, Sargent DJ, Arús P, Monfort A (2008) Synteny conservation between two distantly-related Rosaceae genomes: Prunus (the stone fruits) and Fragaria (the strawberry). BMC Plant Biol 8: 67.
48. Von Malek B, Debener T (1998) Genetic analysis of resistance to black spot (Diplocarpon rosae) in tetraploid roses. Theor Appl Genet 96: 228-231.
49. Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93: 77-78.
50. Wenzl P, Li HB, Carling J, Zhou MX, Raman H, Paul E, Hearnden P, Maier C, Xia L, Caig V, Ovesna J, Cakir M, Poulsen D, Wang JP, Raman R, Smith KP, Muehlbauer GJ, Chalmers KJ, Kleinhofs A, Huttner E, Kilian A (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits. BMC Genomics 7: 206.
51. Whitaker VM, Bradeen JM, Debener T, Biber A, Hokanson SC (2010) Rdr3, a novel locus conferring black spot disease resistance in tetraploid rose: genetic analysis, LRR profiling, and SCAR marker development. Theor Appl Genet 120: 573-585.
52. Yan Z, Denneboom C, Hattendorf A, Dolstra O, Debener T, Stam P, Visser PB (2005) Construction of an integrated map of rose with AFLP, SSR, PK, RGA, RFLP, SCAR and morphological markers. Theor Appl Genet 110: 766-777.
53. Zhang LH, Byrne DH, Ballard RE, Rajapakse S (2006) Microsatellite marker development in rose and its application in tetraploid mapping. J Am Soc Hortic Sci 131: 380-387.