Development of "universal" gene-specific markers from Malus spp. cDNA sequences, their mapping and use in synteny studies within Rosaceae

Tree Genetics and Genomes

Volumn 5, Issue 1, 2009, Pages 133-145

  Sargent, Daniel J ^a   Marchese, Annalisa ^a,b   Simpson, David W ^a   Howad, Werner ^c   Fernández Fernández, Felicidad ^a   Monfort, Amparo ^c   Arús, Pere ^c   Evans, Kate M ^a   Tobutt, Kenneth R ^a  

^a EAST MALLING RESEARCH   (United Kingdom)

^b UNIVERSITY OF PALERMO   (Italy)

^c IRTA   (Spain)

Author keywords

Arabidopsis; Bin mapping; Comparative mapping; Fragaria; Prunus; Rosaceae

Indexed keywords

ARABIDOPSIS; FRAGARIA; FRAGARIA X ANANASSA; MALUS; MALUS X DOMESTICA; PRUNUS; ROSACEAE;

EID: 57349188048     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-008-0178-5     Document Type: Article

References (29)

1. Angiosperm Phylogeny Group 2003 An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Bot J Linn Soc 141 399 436
2. J Ballester R Bošković I Batlle P Arús F Vargas MC de Vicente 1998 Location of the self-incompatibility gene on the almond linkage map Plant Breeding 117 69 72
3. MW Bonierbale RL Plaisted SD Tanksley 1988 RFLP maps based on a common set of clones reveal modes of chromosomal evolution in potato and tomato Genetics 120 1095 1103
4. HK Choi D Kim T Uhm E Limpens H Lim JH Mun P Kalo RV Penmetsa A Seres O Kulikova BA Roe T Bisseling GB Kiss DR Cook 2004 A sequence-based genetic map of Medicago truncatula and comparison of marker collinearity with M-sativa Genetics 166 1463 1502
5. TM Davis H Yu 1997 A linkage map of the diploid strawberry, Fragaria vesca J Hered 88 215 221
6. KM Devos MD Gale 2000 Genome relationships: the grass model in current research Plant Cell 12 637 646
7. E Dirlewanger E Graziano T Joobeur F Garriga-Calderé P Cosson W Howad P Arús 2004 Comparative mapping and marker-assisted selection in Rosaceae fruit crops Proc Natl Acad Sci U S A 101 9891 9896
8. S Doganlar A Frary RN Daunay MC Lester SD Tanksley 2002 A comparative genetic linkage map of eggplant (Solanum melongena) and its implications for genome evolution in the Solanaceae Genetics 161 1697 1711
9. I Dominguez E Graziano C Gebhardt A Barakat S Berry P Arús M Delseny S Barnes 2003 Plant genome archaeology: evidence for conserved ancestral chromosome segments in dicotyledonous plant species Plant Biotech J 1 91 99
10. F Fernández-Fernández KM Evans JB Clarke CL Govan CM James S Marič KR Tobutt 2008 Development of an STS map of an interspecific progeny of Malus Tree Genet Gen 4 469 479 doi:10.1007/s11295-007-0124-y
11. E Fukatsu K Isoda T Hirao M Takahashi A Watanabe 2005 Development and characterization of simple sequence repeat DNA markers for Zelkova serrata Mol Ecol Notes 5 378 380
12. LL Georgi Y Wang GL Reighard L Mao RA Wing AG Abbott 2003 Comparison of peach and Arabidopsis genomic sequences: fragmentary conservation of gene neighbourhoods Genome 46 268 276
13. W Howad T Yamamoto E Dirlewanger R Testolin P Cosson G Cipriani AJ Monforte L Georgi AG Abbott P Arús 2005 Mapping with a few plants: using selective mapping for microsatellite saturation of the Prunus reference map Genetics 171 1305 1309
14. Illa E, Arús P, Dirlewanger E, Le Dantec L, Howad W (2007) ISAFRUIT: bin mapping of candidate genes involved in fruit quality of peach. In: 12th EUCARPIA symposium on fruit breeding and genetics, Zaragoza, Spain, P058
15. S Jung D Main M Staton I Cho T Zhebentyayeva P Arús A Abbott 2006 Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes BMC Genomics 7 81
16. P Kaló A Seres SA Taylor J Jakab Z Kevei A Kereszt G Endre THN Ellis GB Kiss 2004 Comparative mapping between Medicago sativa and Pisum sativum Mol Genet Gen 272 235 246
17. R Liebhard L Gianfranceschi B Koller CD Ryder R Tarchini E Van de Weg C Gessler 2002 Development and characterisation of 140 new microsatellites in apple (Malus × domestica Borkh.) Mol Breeding 10 217 241
18. L Lukens F Zou D Lydiate I Parkin T Osborn 2003 Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana Genetics 164 359 372
19. RC Ma MM Oliveira 2002 Evolutionary analysis of S-RNase genes from Rosaceae species Mol Genet Gen 267 71 78
20. C Maliepaard FH Alston G van Arkel LM Brown E Chevreau F Dunemann KM Evans S Gardiner P Guilford AW van Heusden J Janse F Laurens JR Lynn AG Manganaris APM den Nijs N Periam E Rikkerink P Roche C Ryder S Sansavini H Schmidt S Tartarini JJ Verhaegh M Vrielink-van Ginkel GJ King 1998 Aligning male and female linkage maps of apple (Malus pumila Mill.) using multi-allelic markers Theor Appl Genet 97 60 73
21. S Nier DW Simpson KR Tobutt DJ Sargent 2006 Construction of a genetic linkage map of an interspecific diploid Fragaria BC1 mapping population (F. vesca 815 × [F. vesca 815 × F. viridis 903]) and its comparison to the Fragaria reference map (FVxFN) J Hortic Sci Biotech 81 645 650
22. SY Rhee W Beavis TZ Berardini GH Chen D Dixon A Doyle M Garcia-Hernandez E Huala G Lander M Montoya N Miller LA Mueller S Mundodi L Reiser J Tacklind DC Weems YH Wu I Xu D Yoo J Yoon PF Zhang 2003 The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community Nucleic Acids Res 31 224 228
23. Rozen S, Skaletsky HJ (1998) PRIMER 3. Code available at http://www-genome.wi.mit.edu/genome-software/other/primer3.html
24. DJ Sargent AM Hadonou DW Simpson 2003 Development and characterisation of polymorphic microsatellite markers from Fragaria viridis, a wild diploid strawberry Mol Ecol Notes 3 550 552
25. DJ Sargent A Rys S Nier DW Simpson KR Tobutt 2007 The development and mapping of functional markers in Fragaria and their transferability and potential for mapping in other genera Theor Appl Genet 114 373 384
26. DJ Sargent G Cipriani S Vilanova D Gil-Ariza P Arús DW Simpson KR Tobutt A Monfort 2008 The development of a bin mapping population and the selective mapping of 103 markers in the diploid Fragaria reference mapping population FV×FN Genome 51 120 127
27. RE Voorrips 2002 MapChart: software for the graphical presentation of linkage maps and QTLs J Hered 93 77 78
28. H Wei Y Fu R Arora 2005 Intron-flanking EST-PCR markers: from genetic marker development to gene structure analysis in rhododendron Theor Appl Genet 111 1347 1356
29. T Yamamoto T Kimura T Saito K Kotobuki N Matsuta R Liebhard C Gessler WE van de Weg T Hayashi 2004 Genetic linkage maps of Japanese and European pears aligned to the apple consensus map Acta Hort 663 51 56