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Volumn 121, Issue 3, 2011, Pages 1119-1129

NSR-seq transcriptional profiling enables identification of a gene signature of Plasmodium falciparum parasites infecting children

Author keywords

[No Author keywords available]

Indexed keywords

GLOBIN; MALARIA VACCINE; MEMBRANE PROTEIN; PROTEIN VAR2CSA; RIBOSOME RNA; UNCLASSIFIED DRUG;

EID: 79952221674     PISSN: 00219738     EISSN: 15588238     Source Type: Journal    
DOI: 10.1172/JCI43457     Document Type: Article
Times cited : (65)

References (48)
  • 1
    • 57649122948 scopus 로고    scopus 로고
    • World Health Organization. Geneva, Switzerland: World Health Organization
    • World Health Organization. World Malaria Report 2008. Geneva, Switzerland: World Health Organization: 2008.
    • (2008) World Malaria Report 2008
  • 3
    • 8644256896 scopus 로고    scopus 로고
    • Pregnancy-associated malaria and the prospects for syndrome-specific antimalaria vaccines
    • DOI 10.1084/jem.20041974
    • Smith JD, Deitsch KW. Pregnancy-associated malaria and the prospects for syndrome-specific antimalaria vaccines. J Exp Med. 2004;200(9):1093-1097. (Pubitemid 39507048)
    • (2004) Journal of Experimental Medicine , vol.200 , Issue.9 , pp. 1093-1097
    • Smith, J.D.1    Deitsch, K.W.2
  • 4
    • 43449088222 scopus 로고    scopus 로고
    • Chapter 1 Strain Theory of Malaria. The First 50 Years
    • DOI 10.1016/S0065-308X(08)00201-7, PII S0065308X08002017
    • McKenzie FE, Smith DL, O'Meara WP, Riley EM. Strain theory of malaria: the first 50 years. Adv Parasitol. 2008;66:1-46. (Pubitemid 351672128)
    • (2008) Advances in Parasitology , vol.66 , pp. 1-46
    • McKenzie, F.E.1    Smith, D.L.2    O'Meara, W.P.3    Riley, E.M.4
  • 5
    • 0029992826 scopus 로고    scopus 로고
    • Adherence of Plasmodium falciparum to chondroitin sulfate A in the human placenta
    • Fried M, Duffy PE. Adherence of Plasmodium falciparum to chondroitin sulfate A in the human placenta. Science. 1996;272(5267):1502-1504. (Pubitemid 26200005)
    • (1996) Science , vol.272 , Issue.5267 , pp. 1502-1504
    • Fried, M.1    Duffy, P.E.2
  • 6
    • 0037015614 scopus 로고    scopus 로고
    • Genome sequence of the human malaria parasite Plasmodium falciparum
    • Gardner MJ, et al. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature. 2002;419(6906):498-511.
    • (2002) Nature , vol.419 , Issue.6906 , pp. 498-511
    • Gardner, M.J.1
  • 7
    • 0037034017 scopus 로고    scopus 로고
    • The pathogenic basis of malaria
    • DOI 10.1038/415673a
    • Miller LH, Baruch DI, Marsh K, Doumbo OK. The pathogenic basis of malaria. Nature. 2002; 415(6872):673-679. (Pubitemid 34136400)
    • (2002) Nature , vol.415 , Issue.6872 , pp. 673-679
    • Miller, L.H.1    Baruch, D.I.2    Marsh, K.3    Doumbo, O.K.4
  • 8
    • 7444266246 scopus 로고    scopus 로고
    • Clinical features and pathogenesis of severe malaria
    • DOI 10.1016/j.pt.2004.09.006, PII S147149220400251X
    • Mackintosh CL, Beeson JG, Marsh K. Clinical features and pathogenesis of severe malaria. Trends Parasitol. 2004;20(12):597-603. (Pubitemid 39446751)
    • (2004) Trends in Parasitology , vol.20 , Issue.12 , pp. 597-603
    • MacKintosh, C.L.1    Beeson, J.G.2    Marsh, K.3
  • 11
    • 10344250457 scopus 로고    scopus 로고
    • Targeting malaria virulence and remodeling proteins to the host erythrocyte
    • DOI 10.1126/science.1102452
    • Marti M, Good RT, Rug M, Knuepfer E, Cowman AF. Targeting malaria virulence and remodeling proteins to the host erythrocyte. Science. 2004; 306(5703):1930-1933. (Pubitemid 39627856)
    • (2004) Science , vol.306 , Issue.5703 , pp. 1930-1933
    • Marti, M.1    Good, R.T.2    Rug, M.3    Knuepfer, E.4    Cowman, A.F.5
  • 12
    • 77952584621 scopus 로고    scopus 로고
    • New insights into protein export in malaria parasites
    • Haase S, de Koning-Ward TF. New insights into protein export in malaria parasites. Cell Microbiol. 2010; 12(5):580-587.
    • (2010) Cell Microbiol , vol.12 , Issue.5 , pp. 580-587
    • Haase, S.1    De Koning-Ward, T.F.2
  • 14
    • 66149141833 scopus 로고    scopus 로고
    • Statistical estimation of cell-cycle progression and lineage commitment in Plasmodium falciparum reveals a homogeneous pattern of transcription in ex vivo culture
    • Lemieux JE, et al. Statistical estimation of cell-cycle progression and lineage commitment in Plasmodium falciparum reveals a homogeneous pattern of transcription in ex vivo culture. Proc Natl Acad Sci U S A. 2009;106(18):7559- 7564.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , Issue.18 , pp. 7559-7564
    • Lemieux, J.E.1
  • 18
    • 46249130709 scopus 로고    scopus 로고
    • The beginning of the end for microarrays?
    • DOI 10.1038/nmeth0708-585, PII NMETH0708-585
    • Shendure J. The beginning of the end for microarrays? Nat Methods. 2008;5(7):585-587. (Pubitemid 351911858)
    • (2008) Nature Methods , vol.5 , Issue.7 , pp. 585-587
    • Shendure, J.1
  • 19
    • 34547418997 scopus 로고    scopus 로고
    • The human reticulocyte transcriptome
    • Goh SH, et al. The human reticulocyte transcriptome. Physiol Genomics. 2007;30(2):172-178.
    • (2007) Physiol Genomics , vol.30 , Issue.2 , pp. 172-178
    • Goh, S.H.1
  • 20
    • 55649098341 scopus 로고    scopus 로고
    • The long march: A sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing
    • Sorber K, et al. The long march: a sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing. PLoS One. 2008;3(10):e3495.
    • (2008) PLoS One , vol.3 , Issue.10
    • Sorber, K.1
  • 21
    • 69549112743 scopus 로고    scopus 로고
    • Digital transcriptome profiling using selective hexamer priming for cDNA synthesis
    • Armour CD, et al. Digital transcriptome profiling using selective hexamer priming for cDNA synthesis. Nat Methods. 2009;6(9):647-649.
    • (2009) Nat Methods , vol.6 , Issue.9 , pp. 647-649
    • Armour, C.D.1
  • 22
    • 79952205191 scopus 로고    scopus 로고
    • Web site. Updated July 15, Accessed September 15, 2010
    • PlasmoDB. Plasmodium Genomics Resource Web site. http://www.plasmodb.org/ plasmo/. Updated July 15, 2010. Accessed September 15, 2010.
    • (2010) Plasmodium Genomics Resource
  • 23
    • 1942477417 scopus 로고    scopus 로고
    • Malaria and the Red Blood Cell Membrane
    • DOI 10.1053/j.seminhematol.2004.01.004
    • Cooke BM, Mohandas N, Coppel RL. Malaria and the red blood cell membrane. Semin Hematol. 2004; 41(2):173-188. (Pubitemid 38509641)
    • (2004) Seminars in Hematology , vol.41 , Issue.2 , pp. 173-188
    • Cooke, B.M.1    Mohandas, N.2    Coppel, R.L.3
  • 25
    • 55349104084 scopus 로고    scopus 로고
    • Genomic-scale prioritization of drug targets: The TDR Targets database
    • Agüero F, et al. Genomic-scale prioritization of drug targets: the TDR Targets database. Nat Rev Drug Discov. 2008;7(11):900-907.
    • (2008) Nat Rev Drug Discov , vol.7 , Issue.11 , pp. 900-907
    • Agüero, F.1
  • 27
    • 33646832982 scopus 로고    scopus 로고
    • Transcriptome analysis of antigenic variation in Plasmodium falciparum - Var silencing is not dependent on antisense RNA
    • Ralph SA, et al. Transcriptome analysis of antigenic variation in Plasmodium falciparum - var silencing is not dependent on antisense RNA. Genome Biol. 2005; 6(11):R93.
    • (2005) Genome Biol , vol.6 , Issue.11
    • Ralph, S.A.1
  • 29
    • 73649101765 scopus 로고    scopus 로고
    • Comparative transcriptional and genomic analysis of Plasmodium falciparum field isolates
    • Mackinnon MJ, et al. Comparative transcriptional and genomic analysis of Plasmodium falciparum field isolates. PLoS Pathog. 2009;5(10):e1000644.
    • (2009) PLoS Pathog , vol.5 , Issue.10
    • Mackinnon, M.J.1
  • 30
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10(3):R25.
    • (2009) Genome Biol , vol.10 , Issue.3
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 31
    • 77950265905 scopus 로고    scopus 로고
    • New insights into the blood-stage transcriptome of Plasmodium falciparum using RNASeq
    • Otto TD, et al. New insights into the blood-stage transcriptome of Plasmodium falciparum using RNASeq. Mol Microbiol. 2010;76(1):12-24.
    • (2010) Mol Microbiol , vol.76 , Issue.1 , pp. 12-24
    • Otto, T.D.1
  • 32
    • 4243071596 scopus 로고    scopus 로고
    • The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum
    • Bozdech Z, Llinas M, Pulliam BL, Wong ED, Zhu J, DeRisi JL. The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biol. 2003;1(1):E5.
    • (2003) PLoS Biol , vol.1 , Issue.1
    • Bozdech, Z.1    Llinas, M.2    Pulliam, B.L.3    Wong, E.D.4    Zhu, J.5    DeRisi, J.L.6
  • 34
    • 0038046769 scopus 로고    scopus 로고
    • Selective upregulation of a single distinctly structured var gene in chondroitin sulphate A-adhering Plasmodium falciparum involved in pregnancy-associated malaria
    • DOI 10.1046/j.1365-2958.2003.03570.x
    • Salanti A, et al. Selective upregulation of a single distinctly structured var gene in chondroitin sulphate A-adhering Plasmodium falciparum involved in pregnancy-associated malaria. Mol Microbiol. 2003;49(1):179-191. (Pubitemid 36792013)
    • (2003) Molecular Microbiology , vol.49 , Issue.1 , pp. 179-191
    • Salanti, A.1    Staalsoe, T.2    Lavstsen, T.3    Jensen, A.T.R.4    Sowa, M.P.K.5    Arnot, D.E.6    Hviid, L.7    Theander, T.G.8
  • 35
    • 41249085702 scopus 로고    scopus 로고
    • Disruption of var2csa gene impairs placental malaria associated adhesion phenotype
    • Viebig NK, et al. Disruption of var2csa gene impairs placental malaria associated adhesion phenotype. PLoS One. 2007;2(9):e910.
    • (2007) PLoS One , vol.2 , Issue.9
    • Viebig, N.K.1
  • 36
    • 0023395347 scopus 로고
    • Changes in repeat number, sequence, and reading frame in S-antigen genes of Plasmodium falciparum
    • Saint RB, et al. Changes in repeat number, sequence, and reading frame in S-antigen genes of Plasmodium falciparum. Mol Cell Biol. 1987;7(8):2968-2973.
    • (1987) Mol Cell Biol , vol.7 , Issue.8 , pp. 2968-2973
    • Saint, R.B.1
  • 37
    • 4344590884 scopus 로고    scopus 로고
    • The role of Plasmodium falciparum var genes in malaria in pregnancy
    • DOI 10.1111/j.1365-2958.2004.04256.x
    • Rowe JA, Kyes SA. The role of Plasmodium falciparum var genes in malaria in pregnancy. Mol Microbiol. 2004; 53(4):1011-1019. (Pubitemid 39120425)
    • (2004) Molecular Microbiology , vol.53 , Issue.4 , pp. 1011-1019
    • Rowe, J.A.1    Kyes, S.A.2
  • 38
    • 50049135931 scopus 로고    scopus 로고
    • In vivo studies support the role of trafficking and cytoskeletal-binding motifs in the interaction of MESA with the membrane skeleton of Plasmodium falciparum-infected red blood cells
    • Black CG, Proellocks NI, Kats LM, Cooke BM, Mohandas N, Coppel RL. In vivo studies support the role of trafficking and cytoskeletal-binding motifs in the interaction of MESA with the membrane skeleton of Plasmodium falciparum-infected red blood cells. Mol Biochem Parasitol. 2008; 160(2):143-147.
    • (2008) Mol Biochem Parasitol , vol.160 , Issue.2 , pp. 143-147
    • Black, C.G.1    Proellocks, N.I.2    Kats, L.M.3    Cooke, B.M.4    Mohandas, N.5    Coppel, R.L.6
  • 39
    • 0028805908 scopus 로고
    • Role of the Plasmodium falciparum mature-parasite-infected erythrocyte surface antigen (MESA/PfEMP-2) in malarial infection of erythrocytes
    • Magowan C, Coppel RL, Lau AO, Moronne MM, Tchernia G, Mohandas N. Role of the Plasmodium falciparum mature-parasite-infected erythrocyte surface antigen (MESA/PfEMP-2) in malarial infection of erythrocytes. Blood. 1995;86(8):3196-3204.
    • (1995) Blood , vol.86 , Issue.8 , pp. 3196-3204
    • Magowan, C.1    Coppel, R.L.2    Lau, A.O.3    Moronne, M.M.4    Tchernia, G.5    Mohandas, N.6
  • 40
    • 0028037052 scopus 로고
    • Isolation of a third member of the Plasmodium falciparum glycophorin-binding protein gene family
    • DOI 10.1016/0166-6851(94)00170-7
    • Rudolph B, Nolte D, Knapp B. Isolation of a third member of the Plasmodium falciparum glycophorin-binding protein gene family. Mol Biochem Parasitol. 1994;68(1):173-176. (Pubitemid 24358629)
    • (1994) Molecular and Biochemical Parasitology , vol.68 , Issue.1 , pp. 173-176
    • Rudolph, B.1    Nolte, D.2    Knapp, B.3
  • 41
    • 0023094027 scopus 로고
    • Putative glycophorin-binding protein is secreted from schizonts of Plasmodium falciparum
    • DOI 10.1016/0166-6851(87)90191-5
    • Bianco AE, et al. Putative glycophorin-binding protein is secreted from schizonts of Plasmodium falciparum. Mol Biochem Parasitol. 1987;23(1):91-102. (Pubitemid 17034745)
    • (1987) Molecular and Biochemical Parasitology , vol.23 , Issue.1 , pp. 91-102
    • Bianco, A.E.1    Culvenor, J.G.2    Coppel, R.L.3
  • 42
    • 0021966559 scopus 로고
    • Isolation of the gene for a glycophorin-binding protein implicated in erythrocyte invasion by a malaria parasite
    • Ravetch JV, Kochan J, Perkins M. Isolation of the gene for a glycophorin-binding protein implicated in erythrocyte invasion by a malaria parasite. Science. 1985;227(4694):1593-1597. (Pubitemid 15119469)
    • (1985) Science , vol.227 , Issue.4694 , pp. 1593-1597
    • Ravetch, J.V.1    Kochan, J.2    Perkins, M.3
  • 43
    • 66649104843 scopus 로고    scopus 로고
    • PiggyBac is an effective tool for functional analysis of the Plasmodium falciparum genome
    • Balu B, et al. piggyBac is an effective tool for functional analysis of the Plasmodium falciparum genome. BMC Microbiol. 2009;9:83.
    • (2009) BMC Microbiol , vol.9 , pp. 83
    • Balu, B.1
  • 44
    • 0017311840 scopus 로고
    • Human malaria parasites in continuous culture
    • Trager W, Jensen JB. Human malaria parasites in continuous culture. Science. 1976;193(4254):673-675.
    • (1976) Science , vol.193 , Issue.4254 , pp. 673-675
    • Trager, W.1    Jensen, J.B.2
  • 45
    • 85077257460 scopus 로고    scopus 로고
    • Pfaffl MC Relative quantification
    • Dorak MT, eds. New York, New York, USA: Taylor and Francis
    • Pfaffl MC Relative quantification. In: Dorak MT, eds. Real-time PCR. New York, New York, USA: Taylor and Francis; 2006:63-82.
    • (2006) Real-time PCR , pp. 63-82
  • 46
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • DOI 10.1038/nmeth.1226, PII NMETH.1226
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods. 2008; 5(7):621-628. (Pubitemid 351911867)
    • (2008) Nature Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 47
    • 0023756216 scopus 로고
    • MESA is a Plasmodium falciparum phosphoprotein associated with the erythrocyte membrane skeleton
    • Coppel RL, Lustigman S, Murray L, Anders RF. MESA is a Plasmodium falciparum phosphoprotein associated with the erythrocyte membrane skeleton. Mol Biochem Parasitol. 1988;31(3):223-231.
    • (1988) Mol Biochem Parasitol , vol.31 , Issue.3 , pp. 223-231
    • Coppel, R.L.1    Lustigman, S.2    Murray, L.3    Anders, R.F.4
  • 48
    • 79952205425 scopus 로고    scopus 로고
    • Updated September 1, Accessed September 15, 2010
    • GeneDB. http://www.genedb.org/Homepage/Pfalciparum. Updated September 1, 2010. Accessed September 15, 2010.
    • (2010)


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