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Volumn 25, Issue 4, 2006, Pages 912-920

A molecular modeling analysis of polycyclic aromatic hydrocarbon biodegradation by naphthalene dioxygenase

Author keywords

Biodegradation; Naphthalene dioxygenase; Polycyclic aromatic hydrocarbons

Indexed keywords

MOLECULAR MODELING; NAPHTHALENE DIOXYGENASE; OXYGENATION; REACTION PATTERNS;

EID: 33746916823     PISSN: 07307268     EISSN: None     Source Type: Journal    
DOI: 10.1897/05-311R.1     Document Type: Article
Times cited : (17)

References (32)
  • 1
    • 0027263427 scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons
    • Cerniglia CE. 1993. Biodegradation of polycyclic aromatic hydrocarbons. Curr Opin Biotechnol 4:331-338.
    • (1993) Curr Opin Biotechnol , vol.4 , pp. 331-338
    • Cerniglia, C.E.1
  • 2
    • 17644365496 scopus 로고    scopus 로고
    • Polycyclic aromatic hydrocarbons: A structure-based study
    • Wammer KH, Peters CA. 2005. Polycyclic aromatic hydrocarbons: A structure-based study. Environ Sci Technol 39:2571-2578.
    • (2005) Environ Sci Technol , vol.39 , pp. 2571-2578
    • Wammer, K.H.1    Peters, C.A.2
  • 3
    • 0038780629 scopus 로고    scopus 로고
    • Aqueous phase biodegradation kinetics of ten PAHs
    • Knightes CD, Peters CA. 2003. Aqueous phase biodegradation kinetics of ten PAHs. Environ Eng Sci 20:207-218.
    • (2003) Environ Eng Sci , vol.20 , pp. 207-218
    • Knightes, C.D.1    Peters, C.A.2
  • 4
    • 0034029015 scopus 로고    scopus 로고
    • Aromatic hydrocarbon dioxygenases in environmental biotechnology
    • Gibson DT, Parales RE. 2000. Aromatic hydrocarbon dioxygenases in environmental biotechnology. Curr Opin Biotechnol 11: 236-243.
    • (2000) Curr Opin Biotechnol , vol.11 , pp. 236-243
    • Gibson, D.T.1    Parales, R.E.2
  • 6
    • 0034554794 scopus 로고    scopus 로고
    • Novel forms of ring-hydroxylating dioxygenases are widespread in pristine and contaminated soils
    • Yeates C, Holmes AJ, Gillings MR. 2000. Novel forms of ring-hydroxylating dioxygenases are widespread in pristine and contaminated soils. Environ Microbiol 2:644-653.
    • (2000) Environ Microbiol , vol.2 , pp. 644-653
    • Yeates, C.1    Holmes, A.J.2    Gillings, M.R.3
  • 8
    • 0014974950 scopus 로고
    • cis-1,2-Dihydroxy-1,2- dihydronaphthalene -Bacterial metabolite from naphthalene
    • Jerina DM, Daly JW, Jeffrey AM, Gibson DT. 1971. cis-1,2-Dihydroxy-1,2- dihydronaphthalene -Bacterial metabolite from naphthalene. Arch Biochem Biophys 142:394-396.
    • (1971) Arch Biochem Biophys , vol.142 , pp. 394-396
    • Jerina, D.M.1    Daly, J.W.2    Jeffrey, A.M.3    Gibson, D.T.4
  • 9
    • 0029842912 scopus 로고    scopus 로고
    • Regio- and stereospecific oxidation of fluorene, dibenzofuran, and dibenzothiophene by naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816-4
    • Resnick SM, Gibson DT. 1996. Regio- and stereospecific oxidation of fluorene, dibenzofuran, and dibenzothiophene by naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816-4. Appl Environ Microbiol 62:4073-4080.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4073-4080
    • Resnick, S.M.1    Gibson, D.T.2
  • 17
    • 0019608840 scopus 로고
    • A relationship between reversed phase C18 liquid chromatographic retention and the shape of polycyclic aromatic hydrocarbons
    • Wise SA, Bonnett WJ, Guenther FR, May WE. 1981. A relationship between reversed phase C18 liquid chromatographic retention and the shape of polycyclic aromatic hydrocarbons. J Chromatogr Sci 19:457-465.
    • (1981) J Chromatogr Sci , vol.19 , pp. 457-465
    • Wise, S.A.1    Bonnett, W.J.2    Guenther, F.R.3    May, W.E.4
  • 18
    • 0029560084 scopus 로고
    • Bioconversion of substituted naphthalenes to the corresponding 1,2-dihydro-1,2-dihydroxy derivatives. Determination of the regio- and stereochemistry of the oxidation reactions
    • Bestetti G, Bianchi D, Bosetti A, DiGennaro P, Galli E, Leoni B, Pelizzoni F, Sello G. 1995. Bioconversion of substituted naphthalenes to the corresponding 1,2-dihydro-1,2-dihydroxy derivatives. Determination of the regio- and stereochemistry of the oxidation reactions. Appl Microbiol Biotechnol 44:306-313.
    • (1995) Appl Microbiol Biotechnol , vol.44 , pp. 306-313
    • Bestetti, G.1    Bianchi, D.2    Bosetti, A.3    DiGennaro, P.4    Galli, E.5    Leoni, B.6    Pelizzoni, F.7    Sello, G.8
  • 19
    • 0025060826 scopus 로고
    • Microbial oxidation of naphthalene derivatives-Absolute configuration of metabolites
    • Deluca ME, Hudlicky T. 1990. Microbial oxidation of naphthalene derivatives-Absolute configuration of metabolites. Tetrahedron Lett 31:13-16.
    • (1990) Tetrahedron Lett , vol.31 , pp. 13-16
    • Deluca, M.E.1    Hudlicky, T.2
  • 20
    • 0000858913 scopus 로고
    • Absolute stereochemistry of cis-1,2-dihydrodiol, trans-1,2-dihydrodiol, and cis-3,4-dihydrodiol metabolites of phenanthrene
    • Koreeda M, Akhtar MN, Boyd DR, Neill JD, Gibson DT, Jerina DM. 1978. Absolute stereochemistry of cis-1,2-dihydrodiol, trans-1,2-dihydrodiol, and cis-3,4-dihydrodiol metabolites of phenanthrene. J Org Chem 43:1023-1027.
    • (1978) J Org Chem , vol.43 , pp. 1023-1027
    • Koreeda, M.1    Akhtar, M.N.2    Boyd, D.R.3    Neill, J.D.4    Gibson, D.T.5    Jerina, D.M.6
  • 22
    • 0030034501 scopus 로고    scopus 로고
    • Oxidation of naphthenoaromatic and methyl-substituted aromatic compounds by naphthalene 1,2-dioxygenase
    • Selifonov SA, Grifoll M, Eaton RW, Chapman PJ. 1996. Oxidation of naphthenoaromatic and methyl-substituted aromatic compounds by naphthalene 1,2-dioxygenase. Appl Environ Microbiol 62:507-514.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 507-514
    • Selifonov, S.A.1    Grifoll, M.2    Eaton, R.W.3    Chapman, P.J.4
  • 23
    • 0029012851 scopus 로고
    • Desaturation, dioxygenation, and monooxygenation reactions catalyzed by naphthalene dioxygenase from Pseudomonas sp. strain 9816-4
    • Gibson DT, Resnick SM, Lee K, Brand JM, Torok DS, Wackelt LP, Schocken MJ, Haigler BE. 1995. Desaturation, dioxygenation, and monooxygenation reactions catalyzed by naphthalene dioxygenase from Pseudomonas sp. strain 9816-4. J Bacteriol 177: 2615-2621.
    • (1995) J Bacteriol , vol.177 , pp. 2615-2621
    • Gibson, D.T.1    Resnick, S.M.2    Lee, K.3    Brand, J.M.4    Torok, D.S.5    Wackelt, L.P.6    Schocken, M.J.7    Haigler, B.E.8
  • 24
    • 0030895392 scopus 로고    scopus 로고
    • Stereospecific oxidation of (R)- and (S)-1-indanol by naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816-4
    • Lee K, Resnick SM, Gibson DT. 1997. Stereospecific oxidation of (R)- and (S)-1-indanol by naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816-4. Appl Environ Microbiol 63: 2067-2070.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2067-2070
    • Lee, K.1    Resnick, S.M.2    Gibson, D.T.3
  • 25
    • 0024295005 scopus 로고
    • Benzylic monooxygenation catalyzed by toluene dioxygenase from Pseudomonas putida
    • Wackett LP, Kwart LD, Gibson DT. 1988. Benzylic monooxygenation catalyzed by toluene dioxygenase from Pseudomonas putida. Biochemistry 27:1360-1367.
    • (1988) Biochemistry , vol.27 , pp. 1360-1367
    • Wackett, L.P.1    Kwart, L.D.2    Gibson, D.T.3
  • 26
    • 0021210237 scopus 로고
    • Bacterial oxidation of the polycyclic aromatic hydrocarbons acenaphthene and acenaphthylene
    • Schocken MJ, Gibson DT. 1984. Bacterial oxidation of the polycyclic aromatic hydrocarbons acenaphthene and acenaphthylene. Appl Environ Microbiol 48:10-16.
    • (1984) Appl Environ Microbiol , vol.48 , pp. 10-16
    • Schocken, M.J.1    Gibson, D.T.2
  • 27
    • 0031833978 scopus 로고    scopus 로고
    • Oxidation of methyl-substituted naphthalenes: Pathways in a versatile Sphingomonas paucimobilis strain
    • Dutta TK, Selifonov SA, Gunsalus IC. 1998. Oxidation of methyl-substituted naphthalenes: Pathways in a versatile Sphingomonas paucimobilis strain. Appl Environ Microbiol 64:1884-1889.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 1884-1889
    • Dutta, T.K.1    Selifonov, S.A.2    Gunsalus, I.C.3
  • 28
    • 0028363186 scopus 로고
    • Evidence for the involvement of multiple pathways in the biodegradation of 1-methylnaphthalene and 2-methylnaphthalene by Pseudomonas putida Csvs6
    • Mahajan MC, Phale PS, Vaidyanathan CS. 1994. Evidence for the involvement of multiple pathways in the biodegradation of 1-methylnaphthalene and 2-methylnaphthalene by Pseudomonas putida Csvs6. Arch Microbiol 161:425-433.
    • (1994) Arch Microbiol , vol.161 , pp. 425-433
    • Mahajan, M.C.1    Phale, P.S.2    Vaidyanathan, C.S.3
  • 29
    • 0031025405 scopus 로고    scopus 로고
    • New metabolites in the degradation of fluorene by Arthrobacter sp. strain F101
    • Casellas M, Grifoll M, Bayona JM, Solanas AM. 1997. New metabolites in the degradation of fluorene by Arthrobacter sp. strain F101. Appl Environ Microbiol 63:819-826.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 819-826
    • Casellas, M.1    Grifoll, M.2    Bayona, J.M.3    Solanas, A.M.4
  • 30
    • 0027484182 scopus 로고
    • Dibenzofuran 4,4-α-dioxygenase from Sphingomonas sp. strain Rw1-Angular dioxygenation by a three-component enzyme system
    • Bunz PV, Cook AM. 1993. Dibenzofuran 4,4-α-dioxygenase from Sphingomonas sp. strain Rw1-Angular dioxygenation by a three-component enzyme system. J Bacteriol 175:6467-6475.
    • (1993) J Bacteriol , vol.175 , pp. 6467-6475
    • Bunz, P.V.1    Cook, A.M.2
  • 31
    • 0032989253 scopus 로고    scopus 로고
    • Aspartate 205 in the catalytic domain of naphthalene dioxygenase is essential for activity
    • Parales RE, Parales JV, Gibson DT. 1999. Aspartate 205 in the catalytic domain of naphthalene dioxygenase is essential for activity. J Bacteriol 181:1831-1837.
    • (1999) J Bacteriol , vol.181 , pp. 1831-1837
    • Parales, R.E.1    Parales, J.V.2    Gibson, D.T.3
  • 32
    • 0034051818 scopus 로고    scopus 로고
    • Substrate specificity of naphthalene dioxygenase: Effect of specific amino acids at the active site of the enzyme
    • Parales RE, Lee K, Resnick SM, Jiang HY, Lessner DJ, Gibson DT. 2000. Substrate specificity of naphthalene dioxygenase: Effect of specific amino acids at the active site of the enzyme. J Bacteriol 182:1641-1649.
    • (2000) J Bacteriol , vol.182 , pp. 1641-1649
    • Parales, R.E.1    Lee, K.2    Resnick, S.M.3    Jiang, H.Y.4    Lessner, D.J.5    Gibson, D.T.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.