Towards biochemical filters with a sigmoidal response to pH changes: Buffered biocatalytic signal transduction

Physical Chemistry Chemical Physics

Volumn 13, Issue 10, 2011, Pages 4507-4513

  Pita, Marcos ^a   Privman, Vladimir ^b   Arugula, Mary A ^b   Melnikov, Dmitriy ^b   Bocharova, Vera ^b   Katz, Evgeny ^b  

^a INSTITUTO DE CATÁLISIS Y PETROLEOQUÍMICA   (Spain)

^b CLARKSON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BUFFER; BUTYRIC ACID; BUTYRIC ACID DERIVATIVE; BUTYRIC ACID ETHYL ESTER; ESTERASE;

ANIMAL; ARTICLE; BIOCATALYSIS; BIOLOGICAL MODEL; KINETICS; METABOLISM; MOLECULAR COMPUTER; PH; SWINE;

ANIMALS; BIOCATALYSIS; BUFFERS; BUTYRATES; BUTYRIC ACID; COMPUTERS, MOLECULAR; ESTERASES; HYDROGEN-ION CONCENTRATION; KINETICS; MODELS, BIOLOGICAL; SWINE;

EID: 79951871570     PISSN: 14639076     EISSN: None     Source Type: Journal    
DOI: 10.1039/c0cp02524k     Document Type: Article

References (64)

1. Unconventional Computation. Lecture Notes in Computer Science, ed., C. S. Calude, J. F. Costa, N. Dershowitz, E. Freire, and, G. Rozenberg, Springer, Berlin, vol. 5715, 2009
2. Unconventional Computing, ed., A. Adamatzky, B. De Lacy Costello, L. Bull, S. Stepney, and, C. Teuscher, Luniver Press, UK, 2007
3. A. P. de Silva S. Uchiyama T. P. Vance B. Wannalerse Coord. Chem. Rev. 2007 251 1623 1632
4. A. P. de Silva S. Uchiyama Nat. Nanotechnol. 2007 2 399 410
5. K. Szacilowski Chem. Rev. 2008 108 3481 3548
6. A. Credi Angew. Chem., Int. Ed. 2007 46 5472 5475
7. U. Pischel Angew. Chem., Int. Ed. 2007 46 4026 4040
8. U. Pischel Aust. J. Chem. 2010 63 148 164
9. J. Andreasson U. Pischel Chem. Soc. Rev. 2010 39 174 188
10. E. Katz V. Privman Chem. Soc. Rev. 2010 39 1835 1857
11. A. Saghatelian N. H. Volcker K. M. Guckian V. S. Y. Lin M. R. Ghadiri J. Am. Chem. Soc. 2003 125 346 347
12. G. Ashkenasy M. R. Ghadiri J. Am. Chem. Soc. 2004 126 11140 11141
13. S. Sivan S. Tuchman N. Lotan BioSystems 2003 70 21 33
14. R. Unger J. Moult Proteins 2006 63 53 64
15. M. N. Stojanovic, D. Stefanovic, T. LaBean and H. Yan, in Bioelectronics: From Theory to Applications, I. Willner, and, E. Katz, ed., Wiley-VCH, Weinheim, 2005, pp. 427-455
16. M. N. Win C. D. Smolke Science 2008 322 456 460
17. S. Bi Y. M. Yan S. Y. Hao S. S. Zhang Angew. Chem., Int. Ed. 2010 49 4438 4442
18. T. Li E. K. Wang S. J. Dong J. Am. Chem. Soc. 2009 131 15082 15083
19. M. L. Simpson G. S. Sayler J. T. Fleming B. Applegate Trends Biotechnol. 2001 19 317 323
20. R. Baron O. Lioubashevski E. Katz T. Niazov I. Willner J. Phys. Chem. A 2006 110 8548 8553
21. R. Baron O. Lioubashevski E. Katz T. Niazov I. Willner Angew. Chem., Int. Ed. 2006 45 1572 1576
22. G. Strack M. Pita M. Ornatska E. Katz ChemBioChem 2008 9 1260 1266
23. J. Zhou M. A. Arugula J. Halámek M. Pita E. Katz J. Phys. Chem. B 2009 113 16065 16070
24. T. Niazov R. Baron E. Katz O. Lioubashevski I. Willner Proc. Natl. Acad. Sci. U. S. A. 2006 103 17160 17163
25. G. Strack M. Ornatska M. Pita E. Katz J. Am. Chem. Soc. 2008 130 4234 4235
26. P. Fu Biotechnol. J. 2007 2 91 101
27. J. Wang E. Katz Anal. Bioanal. Chem. 2010 398 1591 1603
28. R. Adar Y. Benenson G. Linshiz A. Rosner N. Tishby E. Shapiro Proc. Natl. Acad. Sci. U. S. A. 2004 101 9960 9965
29. F. C. Simmel Nanomedicine 2007 2 817 830
30. E. E. May P. L. Dolan P. S. Crozier S. Brozik M. Manginell IEEE Sens. J. 2008 8 1011 1019
31. G. von Maltzahn T. J. Harris J.-H. Park D.-H. Min A. J. Schmidt M. J. Sailor S. N. Bhatia J. Am. Chem. Soc. 2007 129 6064 6065
32. M. Kahan B. Gil R. Adar E. Shapiro Physica D (Amsterdam) 2008 237 1165 1172
33. M. Pita J. Zhou K. M. Manesh J. Halámek E. Katz J. Wang Sens. Actuators, B 2009 139 631 636
34. K. M. Manesh J. Halámek M. Pita J. Zhou T. K. Tam P. Santhosh M.-C. Chuang J. R. Windmiller D. Abidin E. Katz J. Wang Biosens. Bioelectron. 2009 24 3569 3574
35. J. R. Windmiller G. Strack M.-C. Chuan J. Halámek P. Santhosh V. Bocharova J. Zhou E. Katz J. Wang Sens. Actuators, B 2010 150 285 290
36. J. Halámek J. R. Windmiller J. Zhou M.-C. Chuang P. Santhosh G. Strack M. A. Arugula S. Chinnapareddy V. Bocharova J. Wang E. Katz Analyst 2010 135 2249 2259
37. J. Halámek V. Bocharova S. Chinnapareddy J. R. Windmiller G. Strack M.-C. Chuang J. Zhou P. Santhosh G. V. Ramirez M. A. Arugula J. Wang E. Katz Mol. BioSyst. 2010 6 2554
38. M. Pita S. Minko E. Katz J. Mater. Sci.: Mater. Med. 2009 20 457 462
39. G. Strack V. Bocharova M. A. Arugula M. Pita J. Halámek E. Katz J. Phys. Chem. Lett. 2010 1 839 843
40. I. Tokarev V. Gopishetty J. Zhou M. Pita M. Motornov E. Katz S. Minko ACS Appl. Mater. Interfaces 2009 1 532 536
41. M. Motornov J. Zhou M. Pita I. Tokarev V. Gopishetty E. Katz S. Minko Small 2009 5 817 820
42. M. Motornov J. Zhou M. Pita V. Gopishetty I. Tokarev E. Katz S. Minko Nano Lett. 2008 8 2993 2997
43. V. Bychkova A. Shvarev J. Zhou M. Pita E. Katz Chem. Commun. 2010 46 94 96
44. V. Bocharova T. K. Tam J. Halámek M. Pita E. Katz Chem. Commun. 2010 46 2088 2090
45. M. Privman T. K. Tam M. Pita E. Katz J. Am. Chem. Soc. 2009 131 1314 1321
46. E. Katz M. Pita Chem.-Eur. J. 2009 15 12554 12564
47. D. Melnikov G. Strack M. Pita V. Privman E. Katz J. Phys. Chem. B 2009 113 10472 10479
48. V. Privman M. A. Arugula J. Halámek M. Pita E. Katz J. Phys. Chem. B 2009 113 5301 5310
49. V. Privman G. Strack D. Solenov M. Pita E. Katz J. Phys. Chem. B 2008 112 11777 11784
50. M. A. Arugula, J. Halámek, E. Katz, D. Melnikov, M. Pita, V. Privman and G. Strack, Second International Conference on Advances in Circuits, Electronics and Micro-Electronics, Proceedings, IEEE Comp. Soc. Publ., Los Alamitos, California, 2009, pp. 1-7
51. V. Privman Isr. J. Chem. 2011 10.1002/ijch.201000066
52. V. Privman V. Pedrosa D. Melnikov M. Pita A. Simonian E. Katz Biosens. Bioelectron. 2009 25 695 701
53. V. Pedrosa D. Melnikov M. Pita J. Halámek V. Privman A. Simonian E. Katz Int. J. Unconv. Comput. 2011
54. V. Privman J. Halámek M. A. Arugula D. Melnikov V. Bocharova E. Katz J. Phys. Chem. B 2010 114 14103 14109
55. R. B. Silverman, The Organic Chemistry of Enzyme-Catalyzed Reactions, Revised Edition, Academic Press, San Diego, 2000, ch. II, p. 60
56. F. A. Carey and R. J. Sundberg, Advanced Organic Chemistry, Part A: Structure and Mechanisms, Springer, New York, 2007, ch. 2, p. 217
57. N. C. Craig G. B. Kristiakowsky J. Am. Chem. Soc. 1958 80 1574 1579
58. F. Bergmann S. Rimon Biochem. J. 1958 70 339 344
59. A. J. Adler G. B. Kristiakowsky J. Am. Chem. Soc. 1962 84 695 703
60. N. E. Buchler U. Gerland T. Hwa Proc. Natl. Acad. Sci. U. S. A. 2005 102 9559 9564
61. Y. Setty A. E. Mayo M. G. Surette U. Alon Proc. Natl. Acad. Sci. U. S. A. 2003 100 7702 7707
62. U. Alon, An Introduction to Systems Biology. Design Principles of Biological Circuits, Chapman & Hall/CRC Press, Boca Raton, Florida, 2007
63. N. E. Good G. D. Winget W. Winter T. N. Connolly S. Izawa R. M. M. Singh Biochemistry 1966 5 467 477
64. W. J. Ferguson K. I. Braunschweiger W. R. Braunschweiger J. R. Smith J. J. McCormick C. C. Wasmann N. P. Jarvis D. H. Bell N. E. Good Anal. Biochem. 1980 104 300 310