Analog noise reduction in enzymatic logic gates

Journal of Physical Chemistry B

Volumn 113, Issue 30, 2009, Pages 10472-10479

  Melnikov, Dmitriy ^a   Strack, Guinevere ^a   Pita, Marcos ^a   Privman, Vladimir ^a   Katz, Evgeny ^a  

^a CLARKSON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACOUSTIC NOISE; AMPLIFICATION; HYDROGEN; HYDROGEN PEROXIDE; RATE CONSTANTS;

ANALOG NOISE; CO-SUBSTRATE; COSUBSTRATES; GATE OPERATION; HORSE-RADISH PEROXIDASE; INPUT NOISE; SULFONIC ACID;

LOGIC GATES;

EID: 67651208552     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp904585x     Document Type: Article

References (67)

1. (a) De Silva, A. P.; Uchiyama, S. Nat. Nanotechnol. 2007, 2, 399-410.
2. (b) Credi, A. Angew. Chem., Int. Ed. 2007, 46, 5472-5475.
3. (c) De Silva, A. P.; Uchiyama, S.; Vance, T. P.; Wannalerse, B. Coord. Chem. Rev. 2007, 251, 1623-1632.
4. (d) Pischel, U. Angew. Chem., Int. Ed. 2007, 46, 4026-4040.
5. (a) Shao, X. G.; Jiang, H. Y.; Cai, W. S. Prog. Chem. 2002, 14, 37-46.
6. (b) Saghatelian, A.; Volcker, N. H.; Guckian, K. M.; Lin, V. S. Y.; Ghadiri, M. R. J. Am. Chem. Soc. 2003, 125, 346-347.
7. (c) Ashkenasy, G.; Ghadiri, M. R. J. Am. Chem. Soc. 2004, 126, 11140-11141.
8. (a) De Silva, A. P.; Gunaratne, H. Q. N.; McCoy, C. P. Nature 1993, 364, 42-44.
9. (b) De Silva, A. P.; Gunaratne, H. Q. N.; McCoy, C. P. J. Am. Chem. Soc. 1997, 119, 7891-7892.
10. De Silva, A. P.; Gunaratne, H. Q. N.; Maguire, G. E. M. J. Chem. Soc., Chem. Commun. 1994, 1213-1214.
11. (a) Credi, A.; Balzani, V.; Langford, S. J.; Stoddart, J. F. J. Am. Chem. Soc. 1997, 119, 2679-2681.
12. (b) De Silva, A. P.; McClenaghan, N. D. Chem. Eur. J. 2002, 8, 4935-4945.
13. (a) De Silva, A. P.; Dixon, I. M.; Gunaratne, H. Q. N.; Gunnlaugsson, T.; Maxwell, P. R. S.; Rice, T. E. J. Am. Chem. Soc. 1999, 121, 1393-1394.
14. (b) Straight, S. D.; Liddell, P. A.; Terazono, Y.; Moore, T. A.; Moore, A. L.; Gust, D. Adv. Funct. Mater. 2007, 17, 777-785.
15. (c) Turfan, B.; Akkaya, E. U. Org. Lett. 2002, 4, 2857-2859.
16. (d) Wang, Z.; Zheng, G.; Lu, P. Org. Lett. 2005, 7, 3669-3672.
17. (a) Baytekin, H. T.; Akkaya, E. U. Org. Lett. 2000, 2, 1725-1727.
18. (b) Zong, G.; Xiana, L.; Lua, G. Tetrahedron Lett. 2007, 48, 3891-3894.
19. (a) Gunnlaugsson, T.; MacDónaill, D. A.; Parker, D. J. Am. Chem. Soc. 2001, 123, 12866-12876.
20. (b) Gunnlaugsson, T.; MacDónaill, D. A.; Parker, D. Chem. Commun. 2000, 93-94.
21. (c) Gunnlaugsson, T.; MacDonaill, D. A.; Parker, D. Chem. Commun. 2000, 93-94.
22. (d) De Sousa, M.; De Castro, B.; Abad, S.; Miranda, M. A.; Pischel, U. Chem. Commun. 2006, 2051-2053.
23. (e) Li, L.; Yu, M.-X.; Li, F. Y.; Yi, T.; Huang, C. H. Colloids Surf. A 2007, 304, 49-53.
24. (f) Gunnlaugsson, T.; MacDónail, D. A.; Parker, D. Chem. Commun. 2000, 93-94.
25. (a) Luxami, V.; Kumar, S. New J. Chem. 2008, 32, 2074-2079.
26. (b) Qian, J. H.; Qian, X. H.; Xu, Y. F.; Zhang, S. Y. Chem. Commun. 2008, 4141-4143.
27. (a) Giansante, C.; Ceroni, P.; Venturi, M.; Sakamoto, J.; Schlueter, A. D. ChemPhysChem 2009, 10, 495-498.
28. (b) Pischel, U.; Heller, B. New J. Chem. 2008, 32, 395-400.
29. (c) De Silva, A. P.; James, M. R.; McKinney, B. O. F.; Pears, D. A.; Weir, S. M. Nat. Mater. 2006, 5, 787-790.
30. (a) Stadler, R.; Ami, S.; Joachim, C.; Forshaw, M. Nanotechnology 2004, 15, S115-S121.
31. (b) Raymo, F. M.; Giordani, S. J. Am. Chem. Soc. 2001, 123, 4651-4652.
32. De Silva, A. P.; Leydet, Y.; Lincheneau, C.; McClenaghan, N. D. J. Phys. 2006, 18, S1847-S1872.
33. Wagner, N.; Ashkenasy, G. Chem. Eur. J. 2009, 15, 1765-1775.
34. Fedichkin, L.; Katz, E.; Privman, V. J. Comput. Theor. Nanosci. 2008, 5, 36-43.
35. Privman, V.; Strack, G.; Solenov, D.; Pita, M.; Katz, E. J. Phys. Chem. B 2008, 112, 11777-11784.
36. Privman, V.; Arugula, M. A.; Halamek, J.; Pita, M.; Katz, E. J. Phys. Chem. B. 2009, 113, 5301-5310.
37. (a) Tam, T. K.; Pita, M.; Ornatska, M.; Katz, E. Bioelectrochemistry 2009. in press (doi: 10.1016/j.bioelechem.2009.03.008).
38. (b) Privman, M.; Tam, T. K.; Pita, M.; Katz, E. J. Am. Chem. Soc. 2009, 131, 1314-1321.
39. (a) Sivan, S.; Lotan, N. Biotechnol. Prog. 1999, 15, 964-970.
40. (b) Sivan, S.; Tuchman, S.; Lotan, N. Biosystems 2003, 70, 21-33.
41. (c) Deonarine, A. S.; Clark, S. M.; Konermann, L. Future Gener. Comput. Syst. 2003, 19, 87-97.
42. (d) Ashkenazi, G.; Ripoll, D. R.; Lotan, N.; Scheraga, H. A. Biosens. Bioelectron. 1997, 12, 85-95.
43. (e) Unger, R.; Moult, J. Proteins 2006, 63, 53-64.
44. (a) Stojanovic, M. N.; Stefanovic, D.; LaBean, T.; Yan, H. In: Bioelectronics: From Theory to Applications; Willner, I.; Katz, E., Eds.; Wiley-VCH: Weinheim, 2005; pp 427-455.
45. (b) Saghatelian, A.; Volcker, N. H.; Guckian, K. M.; Lin, V. S. Y.; Ghadiri, M. R. J. Am. Chem. Soc. 2003, 125, 346-347.
46. (c) Ashkenasy, G.; Ghadiri, M. R. J. Am. Chem. Soc. 2004, 126, 11140-11141.
47. Win, M. N.; Smolke, C. D. Science 2008, 322, 456-460.
48. Simpson, M. L.; Sayler, G. S.; Fleming, J. T.; Applegate, B. Trends Biotechnol. 2001, 19, 317-323.
49. Arkin, A.; Ross, J. Biophys. J. 1994, 67, 560-578.
50. (a) Amir, L.; Tam, T. K.; Pita, M.; Meijler, M. M.; Alfonta, L.; Katz, E. J. Am. Chem. Soc. 2009, 131, 826-832.
51. (b) Krämer, M.; Pita, M.; Zhou, J.; Ornatska, M.; Poghossian, A.; Schöning, M. J.; Katz, E. J. Phys. Chem. B 2009, 113, 2573-2579.
52. (a) Strack, G.; Pita, M.; Ornatska, M.; Katz, E. ChemBioChem 2008, 9, 1260-1266.
53. (b) Baron, R.; Lioubashevski, O.; Katz, E.; Niazov, T.; Willner, I. Org. Biomol. Chem. 2006, 4, 989-991.
54. (c) Baron, R.; Lioubashevski, O.; Katz, E.; Niazov, T.; Willner, I. J. Phys. Chem. A 2006, 110, 8548-8553.
55. (d) Baron, R.; Lioubashevski, O.; Katz, E.; Niazov, T.; Willner, I. Angew. Chem., Int. Ed. 2006, 45, 1572-1576.
56. (a) Niazov, T.; Baron, R.; Katz, E.; Lioubashevski, O.; Willner, I. Proc. Natl. Acad. U.S.A. 2006, 103, 17160-17163.
57. (b) Strack, G.; Ornatska, M.; Pita, M.; Katz, E. J. Am. Chem. Soc. 2008, 130, 4234-4235.
58. Hasinoff, B. B.; Dunford, H. B. Biochemistry 1970, 9, 4930-4939.
59. Smith, A. T.; Sanders, S. A.; Thorneley, R. N. F.; Burke, J. F.; Bray, R. R. C. Eur. J. Biochem. 1992, 207, 507-519.
60. Buchler, N. E.; Gerland, U.; Hwa, T. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 9559-9564.
61. (a) Setty, Y.; Mayo, A. E.; Surette, M. G.; Alon, U. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 7702-7707.
62. (b) Alon, U. An Introduction to Systems Biology. Design Principles of Biological Circuits; Chapman & Hall/CRC Press: Boca Raton, FL, 2007.
63. Kamal, J. K. A.; Behere, D. V. J. Inorg. Biochem. 2003, 94, 236-242.
64. Childs, R. E.; Bardsley, W. G. Biochem. J. 1975, 145, 93-103.
65. Roberts, D. V. Enzyme Kinetics; Cambridge University Press: Cambridge, UK, 1977.
66. (a) Feinerman, O.; Rotem, A.; Moses, E. Nat. Phys. 2008, 4, 967-973.
67. (b) Feinerman, O.; Moses, E. J. Neurosci. 2005, 26, 4526-4534.