메뉴 건너뛰기




Volumn 46, Issue 3, 2011, Pages 860-869

An application of two MIFs-based tools (Volsurf+ and Pentacle) to binary QSAR: The case of a palinurin-related data set of non-ATP competitive Glycogen Synthase Kinase 3β (GSK-3β) inhibitors

Author keywords

Alzheimer's disease; Binary QSAR; GRIND; MIFs; Palinurin; VolSurf descriptors

Indexed keywords

GLYCOGEN SYNTHASE KINASE 3 INHIBITOR; GLYCOGEN SYNTHASE KINASE 3BETA; PALINURIN; UNCLASSIFIED DRUG;

EID: 79951672793     PISSN: 02235234     EISSN: 17683254     Source Type: Journal    
DOI: 10.1016/j.ejmech.2010.12.024     Document Type: Article
Times cited : (26)

References (34)
  • 1
    • 1842653539 scopus 로고    scopus 로고
    • Burger's medicinal chemistry and drug discovery
    • D.J. Abraham, Hoboken, John Wiley & Sons New York
    • C.D. Selassie Burger's medicinal chemistry and drug discovery Drug Discovery vol. 1 2003 D.J. Abraham, Hoboken, John Wiley & Sons New York 1-48
    • (2003) Drug Discovery , vol.1
    • Selassie, C.D.1
  • 2
    • 35148898451 scopus 로고    scopus 로고
    • Guidance document on the validation of (quantitative) structure-activity relationship ((Q)SAR) models
    • Organization for Economic Co-operation and Development
    • Guidance document on the validation of (quantitative) structure-activity relationship ((Q)SAR) models OECD Series on Testing and Assessment 69 (OECD Document ENV/JM/MONO) 2007 Organization for Economic Co-operation and Development 55-65
    • (2007) OECD Series on Testing and Assessment 69 (OECD Document ENV/JM/MONO)
  • 3
    • 77951975697 scopus 로고    scopus 로고
    • QSAR models for predicting cathepsin B inhibition by small molecules - Continuous and binary QSAR models to classify cathepsin B inhibition activities of small molecole
    • Z. Zhou, Y. Wang, and S.H. Bryant QSAR models for predicting cathepsin B inhibition by small molecules - continuous and binary QSAR models to classify cathepsin B inhibition activities of small molecole J. Mol. Graphics Model 28 8 2010 714 727
    • (2010) J. Mol. Graphics Model , vol.28 , Issue.8 , pp. 714-727
    • Zhou, Z.1    Wang, Y.2    Bryant, S.H.3
  • 5
    • 0021871375 scopus 로고
    • A computational procedure for determining energetically favorable binding sites on biologically important macromolecules
    • DOI 10.1021/jm00145a002
    • P.J. Goodford A computational procedure for determining energetically favorable binding sites on biological important macromolecules J. Med. Chem. 28 1985 849 857 (Pubitemid 15012490)
    • (1985) Journal of Medicinal Chemistry , vol.28 , Issue.7 , pp. 849-857
    • Goodford, P.J.1
  • 6
    • 0027439587 scopus 로고
    • Further development of hydrogen bond functions for use in determining energetically favorable binding sites on molecules of known structure. 1. Ligand probe groups with the ability to form two hydrogen bonds
    • DOI 10.1021/jm00053a018
    • R.C. Wade, K.J. Clark, and P.J. Goodford Further development of hydrogen bond functions for use in determining energetically favorable binding sites on molecules of known structure. 1. Ligand probe groups with the ability to form two hydrogen bonds J. Med. Chem. 36 1993 140 147 (Pubitemid 23040155)
    • (1993) Journal of Medicinal Chemistry , vol.36 , Issue.1 , pp. 140-147
    • Wade, R.C.1    Clark, K.J.2    Goodford, P.J.3
  • 7
    • 0027510004 scopus 로고
    • Further development of hydrogen bond functions for use in determining energetically favorable binding sites on molecules of known structure. 2. Ligand probe groups with the ability to form more than two hydrogen bonds
    • DOI 10.1021/jm00053a019
    • R.C. Wade, and P.J. Goodford Further development of hydrogen bond functions for use in determining energetically favorable binding sites on molecules of known structure. 2. Ligand probe groups with the ability to form more than two hydrogen bonds J. Med. Chem. 36 1993 148 156 (Pubitemid 23040156)
    • (1993) Journal of Medicinal Chemistry , vol.36 , Issue.1 , pp. 148-156
    • Wade, R.C.1    Goodford, P.J.2
  • 8
    • 58549114214 scopus 로고    scopus 로고
    • How to extend the use of grid-based interaction energy maps from chemistry to biotopics
    • G. Caron, A. Nurisso, and G. Ermondi How to extend the use of grid-based interaction energy maps from chemistry to biotopics Chem. Med. Chem. 4 1 2009 29 36
    • (2009) Chem. Med. Chem. , vol.4 , Issue.1 , pp. 29-36
    • Caron, G.1    Nurisso, A.2    Ermondi, G.3
  • 10
    • 0028101464 scopus 로고
    • Comparative molecular field analysis using GRID force-field and GOLPE variable selection methods in a study of inhibitors of glycogen phosphorylase b
    • G. Cruciani Comparative molecular fuel analysis using GRID Force-field and GOLPE variable selection methods in a study of inhibitors of glycogen J. Med. Chem. 37 1994 2589 2601 (Pubitemid 24276786)
    • (1994) Journal of Medicinal Chemistry , vol.37 , Issue.16 , pp. 2589-2601
    • Cruciani, G.1    Watson, K.A.2
  • 12
    • 0023751431 scopus 로고
    • Comparative Molecular Field Analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
    • R.D. Cramer, D.E. Patterson, and J.D. Bunce Comparative Molecular Field Analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins J. Med. Chem. 110 1988 5959 5967
    • (1988) J. Med. Chem. , vol.110 , pp. 5959-5967
    • Cramer, R.D.1    Patterson, D.E.2    Bunce, J.D.3
  • 13
    • 0034625096 scopus 로고    scopus 로고
    • Molecular fields in quantitative structure-permeation relationships: The Volsurf+ approach
    • G. Cruciani, P. Crivori, P. Carrupt, and B. Testa Molecular fields in quantitative structure-permeation relationships: the Volsurf+ approach J. Mol. Struct. (THEOCHEM) 503 2000 17 30
    • (2000) J. Mol. Struct. (THEOCHEM) , vol.503 , pp. 17-30
    • Cruciani, G.1    Crivori, P.2    Carrupt, P.3    Testa, B.4
  • 14
    • 0034213636 scopus 로고    scopus 로고
    • Predicting blood-brain barrier permeation from three-dimensional molecular structure
    • DOI 10.1021/jm990968+
    • P. Crivori, G. Cruciani, and P. Carrupt Testa, predicting blood-brain barrier permeation from three-dimensional molecular structure J. Med. Chem. 110 2000 2204 2216 (Pubitemid 30354545)
    • (2000) Journal of Medicinal Chemistry , vol.43 , Issue.11 , pp. 2204-2216
    • Crivori, P.1    Cruciani, G.2    Carrupt, P.-A.3    Testa, B.4
  • 15
    • 54249093364 scopus 로고    scopus 로고
    • Development and validation of AMANDA, a new algorithm for selecting highly relevant regions in molecular interaction fields
    • M. Pastor Development and validation of AMANDA, a new algorithm for selecting highly relevant regions in molecular interaction fields J. Chem. Inf. Mod. 48 9 2008 1813 1823
    • (2008) J. Chem. Inf. Mod. , vol.48 , Issue.9 , pp. 1813-1823
    • Pastor, M.1
  • 16
    • 70349919668 scopus 로고    scopus 로고
    • Suitability of GRIND-based principal properties for the description of molecular similarity and ligand-based virtual screening
    • A. Durán, I. Zamora, and M. Pastor Suitability of GRIND-based principal properties for the description of molecular similarity and ligand-based virtual screening J. Chem. Inf. Mod. 49 9 2009 2129 2138
    • (2009) J. Chem. Inf. Mod. , vol.49 , Issue.9 , pp. 2129-2138
    • Durán, A.1    Zamora, I.2    Pastor, M.3
  • 17
    • 34948858433 scopus 로고    scopus 로고
    • Influence of conformation on GRIND-based three-dimensional quantitative structure-activity relationship (3D-QSAR)
    • DOI 10.1021/jm0704651
    • G. Caron, and G. Ermondi Influence of conformation on GRIND-based three-dimensional quantitative structure-activity relationship (3D-QSAR) J. Med. Chem. 50 2007 5039 5042 (Pubitemid 47525484)
    • (2007) Journal of Medicinal Chemistry , vol.50 , Issue.20 , pp. 5039-5042
    • Caron, G.1    Ermondi, G.2
  • 18
    • 77953133197 scopus 로고    scopus 로고
    • Design, synthesis and biological evaluation of trans 2- (thiophen-2-yl) vinyl heteroaromatic iodides
    • C.G. Fortuna, V. Barresi, and G. Musumarra Design, synthesis and biological evaluation of trans 2- (thiophen-2-yl) vinyl heteroaromatic iodides Bioorg. Med. Chem. 18 12 2010 4516 4523
    • (2010) Bioorg. Med. Chem. , vol.18 , Issue.12 , pp. 4516-4523
    • Fortuna, C.G.1    Barresi, V.2    Musumarra, G.3
  • 19
    • 39849110726 scopus 로고    scopus 로고
    • The GSK3 hypothesis of Alzheimer's disease
    • DOI 10.1111/j.1471-4159.2007.05194.x
    • C. Hooper, R. Killick, and S. Lovestone The GSK3 hypothesis of Alzheimer's disease J. Neurochem. 104 6 2008 1433 1439 (Pubitemid 351316776)
    • (2008) Journal of Neurochemistry , vol.104 , Issue.6 , pp. 1433-1439
    • Hooper, C.1    Killick, R.2    Lovestone, S.3
  • 20
    • 54249140068 scopus 로고    scopus 로고
    • GSK-3 inhibitors: A ray of hope for the treatment of Alzheimer's disease?
    • A. Martinez, and D.I. Peréz GSK-3 inhibitors: a ray of hope for the treatment of Alzheimer's disease? J. Alzheimer Dis. 15 2 2008 181 191
    • (2008) J. Alzheimer Dis. , vol.15 , Issue.2 , pp. 181-191
    • Martinez, A.1    Peréz, D.I.2
  • 22
    • 79951676610 scopus 로고    scopus 로고
    • WO/2005/054221
    • D. Alonso, I. Dorronsoro, A. Martinez, G. Panizo, A. Fuertes, M.J. Pérez, E. Martin, D.I. Pérez, M. Medina (2005) WO/2005/054221.
    • (2005)
    • Alonso, D.1
  • 24
    • 79951670948 scopus 로고    scopus 로고
    • WO/2008/080986
    • A. Martínez Gil, M. Medina Padilla, Y. Fall Diop, G. Gómez Pácios, M. Pérez Vázquez, E. Martín Aparicio, A. Fuertes Huerta, A.; M. Del Monte Millán, M.L. Navarro Rico, M.J. Pérez Puerto (2008) WO/2008/080986.
    • (2008)
    • Martínez Gil, A.1    Del Monte Millán, M.2
  • 25
    • 41649121041 scopus 로고    scopus 로고
    • A binary QSAR model for classification of hERG potassium channel blockers
    • DOI 10.1016/j.bmc.2008.01.017, PII S0968089608000345
    • K.M. Thai, and G.F. Ecker A binary QSAR model for classification of hERG potassium channel blockers Bioorg. Med. Chem. 16 2008 4107 4119 (Pubitemid 351484009)
    • (2008) Bioorganic and Medicinal Chemistry , vol.16 , Issue.7 , pp. 4107-4119
    • Thai, K.-M.1    Ecker, G.F.2
  • 28
    • 77951050223 scopus 로고    scopus 로고
    • Evaluation of model predictive ability by external validation techniques
    • V. Consonni, D. Ballabio, and R. Todeschini Evaluation of model predictive ability by external validation techniques J. Chemometrics 2010 194 201
    • (2010) J. Chemometrics , pp. 194-201
    • Consonni, V.1    Ballabio, D.2    Todeschini, R.3
  • 32
    • 45849133803 scopus 로고    scopus 로고
    • GRIND-based 3D-QSAR to predict inhibitory activity for similar enzymes, OSC and SHC
    • DOI 10.1016/j.ejmech.2007.09.019, PII S0223523407003583
    • G. Ermondi, and G. Caron GRIND-based 3D-QSAR to predict inhibitory activity for similar enzymes, OSC and SHC Eur. J. Med. Chem. 43 2008 1462 1468 (Pubitemid 351885218)
    • (2008) European Journal of Medicinal Chemistry , vol.43 , Issue.7 , pp. 1462-1468
    • Ermondi, G.1    Caron, G.2
  • 33
    • 0034710718 scopus 로고    scopus 로고
    • GRid-INdependent Descriptors (GRIND): A novel class of alignment-independent three-dimensional molecular descriptors
    • M. Pastor, G. Cruciani, I. Mclay, S. Pickett, and S. Clementi GRid-INdependent Descriptors (GRIND): a novel class of alignment-independent three-dimensional molecular descriptors J. Med. Chem. 43 2000 3233 3243
    • (2000) J. Med. Chem. , vol.43 , pp. 3233-3243
    • Pastor, M.1    Cruciani, G.2    McLay, I.3    Pickett, S.4    Clementi, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.