Phylogenetic relationships and diversity of β-rhizobia associated with Mimosa species grown in Sishuangbanna, China

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 2, 2011, Pages 334-342

  Liu, Xiao Yun ^a,b   Wu, Wei ^b   Wang, En Tao ^c,d   Zhang, Bin ^b   Macdermott, Jomo ^a   Chen, Wen Xin ^c  

^a HEBEI UNIVERSITY   (China)

^b SOUTHWEST FORESTRY UNIVERSITY   (China)

^c CHINA AGRICULTURAL UNIVERSITY   (China)

^d INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BETA RHIZOBIUM; BURKHOLDERIA; CHINA; CONTROLLED STUDY; CUPRIAVIDUS; GENE SEQUENCE; GENOTYPE; GEOGRAPHIC DISTRIBUTION; MICROBIAL DIVERSITY; MIMOSA; MOLECULAR GENETICS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RHIZOBIUM; RNA GENE; RNA SEQUENCE;

BURKHOLDERIA; CHINA; CLUSTER ANALYSIS; CUPRIAVIDUS; DNA, BACTERIAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENETIC VARIATION; GENOTYPE; INTRODUCED SPECIES; MIMOSA; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL, 16S; ROOT NODULES, PLANT; SEQUENCE ANALYSIS, DNA; SYMBIOSIS;

BACTERIA (MICROORGANISMS); BURKHOLDERIA; BURKHOLDERIA CARIBENSIS; BURKHOLDERIA PHYMATUM; CUPRIAVIDUS; CUPRIAVIDUS TAIWANENSIS; MIMOSA;

EID: 79951649868     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.020560-0     Document Type: Article

References (31)

1. Andam, C. P., Mondo, S. J. & Parker, M. A. (2007). Monophyly of nodA and nifH genes across Texan and Costa Rican populations of Cupriavidus nodule symbionts. Appl Environ Microbiol 73, 4686-4690. (Pubitemid 47122616)
2. Barrett, C. F. & Parker, M. A. (2005). Prevalence of Burkholderia sp. nodule symbionts on four mimosoid legumes from Barro Colorado Island, Panama. Syst Appl Microbiol 28, 57-65.
3. Barrett, C. F. & Parker, M. A. (2006). Coexistence of Burkholderia, Cupriavidus, and Rhizobium sp. nodule bacteria on two Mimosa spp. in Costa Rica. Appl Environ Microbiol 72, 1198-1206. (Pubitemid 43271227)
4. Chen, W. X., Tan, Z. Y., Gao, J. L., Li, Y. & Wang, E. T. (1997). Rhizobium hainanense sp. nov., isolated from tropical legumes. Int J Syst Bacteriol 47, 870-873. (Pubitemid 27327786)
5. Chen, W. M., Laevens, S., Lee, T. M., Coenye, T., De Vos, P., Mergeay, M. & Vandamme, P. (2001). Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient. Int J Syst Evol Microbiol 51, 1729-1735. (Pubitemid 32899208)
6. Chen, W. M., Moulin, L., Bontemps, C., Vandamme, P., Béna, G. & Boivin-Masson, C. (2003). Legume symbiotic nitrogen fixation by bproteobacteria is widespread in nature. J Bacteriol 185, 7266-7272. (Pubitemid 37509844)
7. Chen, W. M, de Faria, S., Straliotto, M., R., Pitard, R.M., Simões-Araùjo, J. L., Chou, J. H., Chou, Y. J., Barrios, E., Prescott, A. R. & other authors (2005a). Proof that Burkholderia strains form effective symbioses with legumes: a study of novel Mimosa nodulating strains from South America. Appl Environ Microbiol 71, 7461-7471. (Pubitemid 43194240)
8. Chen, W. M., James, E. K., Chou, J. H., Sheu, S. Y., Yang, S. Z. & Sprent, J. I. (2005b). β-Rhizobia from Mimosa pigra, a newly discovered invasive plant in Taiwan. New Phytol 168, 661-675.
9. Chen, W.-M., James, E. K., Coenye, T., Chou, J.-H., Barrios, E., de Faria, S. M., Elliott, G. N., Sheu, S.-Y., Sprent, J. I. & Vandamme, P. (2006). Burkholderia mimosarum sp. nov., isolated from root nodules of Mimosa spp. from Taiwan and South America. Int J Syst Evol Microbiol 56, 1847-1851. (Pubitemid 44288410)
10. Chen, W.-M., de Faria, S. M., James, E. K., Elliott, G. N., Lin, K.-Y., Chou, J.-H., Sheu, S.-Y., Cnockaert, M., Sprent, J. I. & Vandamme, P. (2007). Burkholderia nodosa sp. nov., isolated from root nodules of the woody Brazilian legumes Mimosa bimucronata and Mimosa scabrella. Int J Syst Evol Microbiol 57, 1055-1059. (Pubitemid 46796484)
11. Chen, W.-M., de Faria, S. M., Chou, J.-H., James, E. K., Elliott, G. N., Sprent, J. I., Bontemps, C., Young, J. P. W. & Vandamme, P. (2008). Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia. Int J Syst Evol Microbiol 58, 2174-2179.
12. Elliott, G. N., Chen, W. M., Bontemps, C., Chou, J. H., Young, J. P., Sprent, J. I. & James, E. K. (2007a). Nodulation of Cyclopia spp. (Leguminosae, Papilionoideae) by Burkholderia tuberum. Ann Bot 100, 1403-1411.
13. Elliott, G. N., Chen, W. M., Chou, J. H., Wang, H. C., Sheu, S. Y., Perin, L., Reis, V. M., Moulin, L., Simon, M. F. & other authors (2007b). Burkholderia phymatum is a highly effective nitrogen-fixing symbiont of Mimosa spp. and fixes nitrogen ex planta. New Phytol 173, 168-180.
14. Elliott, G. N., Chou, J. H., Chen, W. M., Bloemberg, G. V., Bontemps, C., Martínez-Romero, E., Velázquez, E., Young, J. P., Sprent, J. I. & James, E. K. (2009). Burkholderia spp. are the most competitive symbionts of Mimosa, particularly under N-limited conditions. Environ Microbiol 11, 762-778.
15. Gao, J. L., Sun, J. G., Li, Y., Wang, E. T. & Chen, W. X. (1994). Numerical taxonomy and DNA relatedness of tropical rhizobia isolated from Hainan province, China. Int J Syst Bacteriol 44, 151-158. (Pubitemid 24023668)
16. Gao, J. L., Terefework, Z., Chen, W. & Lindström, K. (2001). Genetic diversity of rhizobia isolated from Astragalus adsurgens growing in different geographical regions of China. J Biotechnol 91, 155-168. (Pubitemid 32868778)
17. Garau, G., Yates, R. J., Deiana, P. & Howieson, J. G. (2009). Novel strains of nodulating Burkholderia have a role in nitrogen fixation with papilionoid herbaceous legumes adapted to acid, infertile soils. Soil Biol Biochem 41, 125-134.
18. Guan, Z.-B., Deng, W.-H., Huang, Z.-L., Huang, N.-Y., Ai, L. & Li, C.-Y. (2006). A preliminary investigation on the alien invasive plants in Xishuangbanna. Trop Agric Sci Technol 29 (4), 35-38 (in Chinese).
19. James, E. K. & Crawford, R. M. M. (1998). Effect of oxygen availability on nitrogen fixation by two Lotus species under flooded conditions. J Exp Bot 49, 599-609. (Pubitemid 28159261)
20. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
21. Laguerre, G., Allard, M. R., Revoy, F. & Amarger, N. (1994). Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Appl Environ Microbiol 60, 56-63. (Pubitemid 24019918)
22. Liu, X. Y., Wang, E. T., Li, Y. & Chen, W. X. (2007). Diverse bacteria isolated from root nodules of Trifolium, Crotalaria and Mimosa grown in the subtropical regions of China. Arch Microbiol 188, 1-14. (Pubitemid 46919107)
23. Page, R. D. M. (1996). TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
24. Parker, M. A., Wurtz, A. K. & Paynter, Q. (2007). Nodule symbiosis of invasive Mimosa pigra in Australia and in ancestral habitats: a comparative analysis. Biol Invasions 9, 127-138. (Pubitemid 46568588)
25. Sneath, P. H. A. & Sokal, R. B. (1973). Numerical Taxonomy. The Principles and Practice of Numerical Classification. San Francisco: W. H. Freeman.
26. Tan, Z. Y., Xu, X. D., Wang, E. T., Gao, J. L., Martínez-Romero, E. & Chen, W. X. (1997). Phylogenetic and genetic relationships of Mesorhizobium tianshanense and related rhizobia. Int J Syst Bacteriol 47, 874-879. (Pubitemid 27327787)
27. Thompson, J. D., Gibson, T., Plewniak, J. F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882. (Pubitemid 28022245)
28. Vandamme, P., Goris, J., Chen, W. M., De Vos, P. & Willems, A. (2002). Burkholderia tuberum sp. nov. and Burkholderia phymatum sp. nov. nodulate the roots of tropical legumes. Syst Appl Microbiol 25, 507-512. (Pubitemid 36125600)
29. Versalovic, J., Schneider, M., de Bruijn, F. J. & Lupski, J. R. (1994). Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol 5, 25-40. (Pubitemid 24312867)
30. Vincent, J. M. (1970). A Manual for the Practical Study of the Root-Nodule Bacteria. Oxford: Blackwell Scientific.
31. Wu, S.-H., Chaw, S.-M. & Rejmánek, M. (2003). Naturalized Fabaceae (Leguminosae) species in Taiwan: the first approximation. Bot Bull Acad Sin Taipei 44, 59-66. (Pubitemid 36260924)