Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 9, 2008, Pages 2174-2179

  Chen, Wen Ming ^a   de Farja, Sergio M ^b   Chou, Jui Hsing ^c   James, Euan K ^d   Elliott, Geoffrey N ^d   Sprent, Janet I ^d   Bontemps, Cyril ^e   Young, J Peter W ^e   Vandamme, Peter ^f  

^a NATIONAL KAOHSIUNG UNIVERSITY OF APPLIED SCIENCES   (Taiwan)

^b EMBRAPA AGROBIOLOGIA   (Brazil)

^c NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^d UNIVERSITY OF DUNDEE   (United Kingdom)

^e UNIVERSITY OF YORK   (United Kingdom)

^f GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; FATTY ACID ESTER; BACTERIAL DNA; BACTERIAL PROTEIN; BACTERIAL RNA; FATTY ACID; PROTEOME; RIBOSOME DNA; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BRAZIL; BURKHOLDERIA; BURKHOLDERIA SABIAE; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GENE SEQUENCE; LEGUME; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PULSED FIELD GEL ELECTROPHORESIS; SEQUENCE HOMOLOGY; STRAIN IDENTIFICATION; TYPE STRAIN; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MIMOSA; MOLECULAR GENETICS; NITROGEN FIXATION; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PHYSIOLOGY; PLANT ROOT; RNA GENE;

BURKHOLDERIA; MIMOSA;

BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; BRAZIL; BURKHOLDERIA; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, RIBOSOMAL; ELECTROPHORESIS, GEL, PULSED-FIELD; FATTY ACIDS; GENES, RRNA; MIMOSA; MOLECULAR SEQUENCE DATA; NITROGEN FIXATION; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PLANT ROOTS; PROTEOME; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 53749098828     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65816-0     Document Type: Article

References (31)

1. Achouak, W., Christen, R., Barakat, M., Martel, M. H. & Heulin, T. (1999). Burkholderia caribensis sp. nov., an exopolysaccharide-producing bacterium isolated from vertisol microaggregates in Martinique. Int J Syst Bacteriol 49, 787-794.
2. Barrett, C. F. & Parker, M. A. (2005). Prevalence of Burkholderia sp. nodule symbionts on four mimosoid legumes from Barro Colorado Island, Panama. Syst Appl Microbiol 28, 57-65.
3. Barrett, C. F. & Parker, M. A. (2006). Coexistence of Burkholderia, Cupriavidus and Rhizobium sp. nodule bacteria on two Mimosa spp. in Costa Rica. Appl Environ Microbiol 72, 1198-1206.
4. Chen, W. M., Laevens, S., Lee, T. M., Coenye, T., De Vos, P., Mergeay, M. & Vandamme, P. (2001). Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient. Int J Syst Evol Microbiol 51, 1729-1735.
5. Chen, W. M., James, E. K., Prescott, A. R., Kierans, M. & Sprent, J. I. (2003a). Nodulation of Mimosa spp. by the β-proteobacterium Ralstonia taiwanensis. Mol Plant Microbe Interact 16, 1051-1061.
6. Chen, W. M., Moulin, L., Bontemps, C., Vandamme, P., Béna, G. & Boivin-Masson, C. (2003b). Legume symbiotic nitrogen fixation by β-Proteobacteria is widespread in nature. J Bacteriol 185, 7266-7272.
7. Chen, W. M., de Faria, S. M., Straliotto, R., Pitard, R. M., Simoes-Araujo, J. L., Chou, J. H., Chou, Y. J., Barrios, E., Prescott, A. R. & other authors (2005a). Proof that Burkholderia strains form effective symbioses with legumes: a study of novel Mimosa-nodulating strains from South America. Appl Environ Microbiol 71, 7461-7471.
8. Chen, W. M., James, E. K., Chou, J. H., Sheu, S. Y., Yang, S. Z. & Sprent, J. I. (2005b). β-Rhizobia from Mimosa pigra, a newly discovered invasive plant in Taiwan. New Phytol 168, 661-675.
9. Chen, W. M., James, E. K., Coenye, T., Chou, J. H., Barrios, E., de Faria, S. M., Elliott, G. N., Sheu, S. Y., Sprent, J. I. & Vandamme, P. (2006). Burkholderia mimosarum sp. nov., isolated from root nodules of Mimosa spp. from Taiwan and South America. Int J Syst Evol Microbiol 56, 1847-1851.
10. Chen, W. M., de Faria, S. M., James, E. K., Elliott, G. N., Lin, K. Y., Chou, J. H., Sheu, S. Y., Cnockaert, M., Sprent, J. I. & Vandamme, P. (2007). Burkholderia nodosa sp. nov., isolated from root nodules of the woody Brazilian legumes Mimosa bimucronata and Mimosa scabrella. Int J Syst Evol Microbiol 57, 1055-1059.
11. Elliott, G. N., Chen, W. M., Chou, J. H., Wang, H. C., Sheu, S. Y., Perin, L., Reis, V. M., Moulin, L., Simon, M. F. & other authors (2007). Burkholderia phymatum is a highly effective nitrogen-fixing symbiont of Mimosa spp. and fixes nitrogen ex planta. New Phytol 173, 168-180.
12. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
13. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
14. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155, 279-284.
15. Goris, J., Dejonghe, W., Falsen, E., De Clerck, E., Geeraerts, B., Willems, A., Top, E. M., Vandamme, P. & De Vos, P. (2002). Diversity of transconjugants that acquired plasmid pJP4 or pEMT1 after inoculation of a donor strain in the A- and B-horizon of an agricultural soil and description of Burkholderia hospita sp. nov. and Burkholderia terricola sp. nov. Syst Appl Microbiol 25, 340-352.
16. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
17. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
18. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
19. Menna, P., Hungria, M., Barcellos, F. G., Bangel, E. V., Hess, P. N. & Martinez-Romero, E. (2006). Molecular phylogeny based on the 16S rRNA gene of elite rhizobial strains used in Brazilian commercial inoculants. Syst Appl Microbiol 29, 315-332.
20. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
21. Moulin, L., Munive, A., Dreyfus, B. & Boivin-Masson, C. (2001). Nodulation of legumes by members of the β-subclass of proteobacteria. Nature 411, 948-950.
22. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
23. Pot, B., Vandamme, P. & Kersters, K. (1994). Analysis of electrophoretic whole-organism protein fingerprints. In Modern Microbial Methods (Chemical Methods in Prokaryotic Systematics Series), pp. 493-521. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
24. Powers, E. M. (1995). Efficacy of the Ryu nonstaining KOH technique for rapidly determining gram reactions of food-borne and waterborne bacteria and yeasts. Appl Environ Microbiol 61, 3756-3758.
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for constructing phylogenetic trees. Mol Biol Evol 4, 406-425.
26. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
27. Vandamme, P. & Coenye, T. (2004). Taxonomy of the genus Cupriavidus: a tale of lost and found. Int J Syst Evol Microbiol 54, 2285-2289.
28. Vandamme, P., Goris, J., Chen, W. M., de Vos, P. & Willems, A. (2002). Burkholderia tuberum sp. nov. and Burkholderia phymatum sp. nov. nodulate the roots of tropical legumes. Syst Appl Microbiol 25, 507-512.
29. Verma, S. C., Chowdhury, S. P. & Tripathi, A. K. (2004). Phylogeny based on 16S rRNA gene and nifH sequences of Ralstonia taiwanensis strains isolated from nitrogen-fixing nodules of Mimosa pudica, in India. Can J Microbiol 50, 313-322.
30. Vincent, J. M. (editor) (1970). A Manual for the Practical Study of the Root-Nodule Bacteria. Oxford: Blackwell Scientific.
31. Yang, H. C., Im, W. T., Kim, K. K., An, D. S. & Lee, S. T. (2006). Burkholderia terrae sp. nov., isolated from a forest soil. Int J Syst Evol Microbiol 56, 453-457.