Coexistence of Burkholderia, Cupriavidus, and Rhizobium sp. nodule bacteria on two Mimosa spp. in Costa Rica

Applied and Environmental Microbiology

Volumn 72, Issue 2, 2006, Pages 1198-1206

  Barrett, Craig F ^a,b   Parker, Matthew A ^a  

^a BINGHAMTON UNIVERSITY   (United States)

^b OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; ENZYME KINETICS; NITROGEN; PLANTS (BOTANY); RNA;

MIMOSA LEGUMES; NEOTROPICS; NITROGENASE ACTIVITY;

GENES;

ACETYLENE; NITROGEN; NITROGENASE; RIBOSOME RNA;

NEW RECORD; NITROGEN FIXATION; NODULATION; RHIZOBACTERIUM;

ACETYLENE REDUCTION ASSAY; ARTICLE; ASSAY; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATE; BETAPROTEOBACTERIA; BURKHOLDERIA; COSTA RICA; CULTURE MEDIUM; CUPRIAVIDUS; ENZYME ACTIVITY; GENE SEQUENCE; GENOTYPE; LEGUME; MIMOSA; NEOTROPICS; NITROGEN FIXATION; NODULATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GROWTH; POLYMERASE CHAIN REACTION; RHIZOBIUM; RNA GENE; SEQUENCE ANALYSIS; SYMBIONT;

BASE SEQUENCE; BURKHOLDERIA; BURKHOLDERIACEAE; COSTA RICA; DNA, BACTERIAL; INTRONS; MIMOSA; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; PLANT ROOTS; RHIZOBIUM; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 23S; SYMBIOSIS;

CENTRAL AMERICA; COSTA RICA;

BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; BURKHOLDERIA; CUPRIAVIDUS; EMBRYOPHYTA; MIMOSA; MIMOSA PIGRA; MIMOSA PUDICA; PROTEOBACTERIA; RHIZOBIUM; RHIZOBIUM SP.;

EID: 33144458430     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.72.2.1198-1206.2006     Document Type: Article

References (37)

1. Barneby, R. C. 1991. Sensitivae Censitae: a description of the genus Mimosa Linnaeus (Mimosaceae) in the New World. Mem. N.Y. Bot. Gard. 65:1-835.
2. Barrett, C. F., and M. A. Parker. 2005. Prevalence of Burkholderia sp. nodule symbionts on four mimosoid legumes from Barro Colorado Island, Panama. Syst. Appl. Microbiol. 28:57-65.
3. Chen, W. M., S. Laevens, T. M. Lee, T. Coenye, P. De Vos, M. Mergeay, and P. Vandamme. 2001. Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient. Int. J. Syst. Evol. Microbiol. 51:1729-1735.
4. Chen, W. M., L. Moulin, C. Bontemps, P. Vandamme, G. Bena, and C. Boivin-Masson. 2003. Legume symbiotic nitrogen fixation by beta-proteobacteria is widespread in nature. J. Bacteriol. 185:7266-7272.
5. Chen, W. M., S. M. de Faria, R. Straliotto, R. M. Pitard, J. L. Simoes-Araujo, J. H. Chou, Y. J. Chou, E. Barrios, A. R. Prescott, G. N. Elliot, J. I. Sprent, J. P. W. Young, and E. K. James. 2005. Proof that Burkholderia forms effective symbioses with legumes: a study of novel Mimosa-nodulating strains from South America. Appl. Environ. Microbiol. 71:7461-7471.
6. Chen, W. M., E. K. James, J. H. Chou, S. Y. Sheu, S. Z. Yang, and J. I. Sprent. 2005. Beta-rhizobia from Mimosa pigra, a newly-discovered invasive plant in Taiwan. New Phytol. 168:661-675.
7. Coenye, T., S. Laevens, A. Willems, M. Ohlen, W. Hannant, J. R. W. Govan, M. Gillis, E. Falsen, and P. Vandamme. 2001. Burkholderia fungorum sp. nov. and Burkholderia caledonica sp. nov., two new species isolated from the environment, animals and human clinical samples. Int. J. Syst. Evol. Microbiol. 51:1099-1107.
8. Croat, T. B. 1978. Flora of Barro Colorado Island. Stanford University Press, Stanford, Calif.
9. Farris, J. S., M. Kallersjo, A. G. Kluge, and C. Bult. 1995. Testing significance of incongruence. Cladistics 10:315-319.
10. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
11. Holm, L. G., D. L. Plucknett, J. V. Pancho, and J. P. Herberger. 1977. The world's worst weeds: distribution and biology. University Press of Hawaii, Honolulu, Hawaii.
12. Janzen, D. H. 1983. Mimosa pigra, p. 277-278. In D. H. Janzen (ed.), Costa Rican natural history. University of Chicago Press, Chicago, Ill.
13. Lafay, B., and J. J. Burden. 1998. Molecular diversity of rhizobia occurring on native shrubby legumes in Southeastern Australia. Appl. Environ. Microbiol. 64:3989-3997.
14. Moulin, L, A. Munive, B. Dreyfus, and C. Boivin-Masson. 2001. Nodulation of legumes by members of the beta-subclass of Proteobacteria. Nature 411: 948-950.
15. Parker, M. A. 1999. Mutualism in metapopulations of legumes and rhizobia. Am. Nat. 153:S48-S60.
16. Parker, M. A. 2003. Genetic markers for analyzing symbiotic relationships and lateral gene transfer in neotropical bradyrhizobia. Mol. Ecol. 12:2447-2455.
17. Parker, M. A. 2003. A widespread neotropical Bradyrhizobium lineage associated with Machaerium and Desmodium (Papilionoideae). Plant Soil 254: 263-268.
18. Parker, M. A. 2004. rRNA and dnaK relationships of Bradyrhizobium sp. nodule bacteria from four Papilionoid legume trees in Costa Rica. Syst. Appl. Microbiol. 27:334-342.
19. Parker, M. A., B. Lafay, J. J. Burdon, and P. van Berkum. 2002. Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium. Microbiology 148:2557-2565.
20. Parker, M. A., and A. Lunk. 2000. Relationships of bradyrhizobia from Platypodium and Machaerium (Papilionoideae tribe Dalbergieae) on Barro Colorado Island, Panama. Int. J. Syst. Evol. Microbiol. 50:1179-1186.
21. Qian, J., and M. A. Parker. 2002. Contrasting nifD and ribosomal gene relationships among Mesorhizobium from Lotus oroboides in northern Mexico. Syst. Appl. Microbiol. 25:68-73.
22. Selenska-Pobell, S., and E. Evguenieva-Hackenburg. 1995. Fragmentation of the large-subunit rRNA in the family Rhizobiaceae. J. Bacteriol. 177:6993-6998.
23. Simms, E. L., and D. L. Taylor. 2002. Partner choice in nitrogen-fixation mutualisms of legumes and rhizobia. Integrative Compar. Biol. 42:369-380.
24. Spoerke, J. M., H. H. Wilkinson, and M. A. Parker. 1996. Nonrandom genotypic associations in a legume-Bradyrhizobium mutualism. Evolution 50:146-154.
25. Stackebrandt, E, and B. M. Goebel. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
26. Sterner, J. P., and M. A. Parker. 1999. Diversity and relationships of bradyrhizobia from Amphicarpaea bracteata based on partial nod and ribosomal sequences. Syst. Appl. Microbiol. 22:387-392.
27. Thompson, J. D., D. G. Higgans, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
28. Valverde, A., E. Velazquez, C. Gutierrez, E. Cervantes, A. Ventosa, and J. M. Igual. 2003. Herbaspirillum lusitanum sp. nov., a novel nitrogen-fixing bacterium associated with root nodules of Phaseolus vulgaris. Int. J. Syst. Evol. Microbiol. 53:1979-1983.
29. van Berkum, P., Z. Terefework, L. Paulin, S. Suomalainen, K. Lindstrom, and B. D. Eardly. 2003. Discordant phylogenies within the rrn loci of rhizobia. J. Bacteriol. 185:2988-2998.
30. Vandamme, P., J. Goris, W. M. Chen, P. de Vos, and A. Willems. 2002. Burkholderia tuberum sp. nov. and Burkholderia phymatum sp. nov., nodulate the roots of tropical legumes. Syst. Appl. Microbiol. 25:507-512.
31. Vandamme, P., and T. Coenye. 2004. Taxonomy of the genus Cupriavidus: a tale of lost and found. Int. J. Syst. Evol. Microbiol. 54:2285-2289.
32. Verma, S. C., S. P. Chowdhury, and A. K. Tripathi. 2004. Phytogeny based on 16S rDNA and nifH sequences of Ralstonia taiwanensis isolated from nitrogen-fixing nodules of Mimosa pudica in India. Can. J. Microbiol. 50:313-322.
33. Wang, E. T., M. A. Rogel, A. Garcia-de los Santos, J. Martinez-Romero, M. A. Cevallos, and E. Martinez-Romero. 1999. Rhizobium etli bv. mimosae, a novel biovar isolated from Mimosa affinis. Int. J. Syst. Bacteriol. 49:1479-1491.
34. West, S. A., E. T. Kiers, E. L. Simms, and R. F. Denison. 2002. Sanctions and mutualism stability: why do rhizobia fix nitrogen? Proc. R. Soc. Lond. B 269:685-694.
35. Wilkinson, H. H., J. M. Spoerke, and M. A. Parker. 1996. Divergence in symbiotic compatibility in a legume-Bradyrhizobium mutualism. Evolution 50:1470-1477.
36. Wu, S.-H., S.-M. Chaw, and M. Rejmanek. 2003. Naturalized Fabaceae (Leguminosae) species in Taiwan: the first approximation. Bot. Bull. Acad. Sin. 44:59-66.
37. Young, J. P. W., and K. E. Haukka. 1996. Diversity and phylogeny of rhizobia. New Phytol. 133:87-94.