-
1
-
-
66549094626
-
The long and the short of riboswitches
-
Serganov, A. (2009) The long and the short of riboswitches. Curr. Opin. Struct. Biol., 19, 251-259.
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 251-259
-
-
Serganov, A.1
-
2
-
-
33846277696
-
Repression of protein synthesis by miRNAs: how many mechanisms?
-
DOI 10.1016/j.tcb.2006.12.007, PII S096289240600359X
-
Pillai, R.S., Bhattacharyya, S.N. and Filipowicz, W. (2007) Repression of protein synthesis by miRNAs: how many mechanisms? Trends Cell Biol., 17, 118-126. (Pubitemid 46357525)
-
(2007)
Trends in Cell Biology
, vol.17
, Issue.3
, pp. 118-126
-
-
Pillai, R.S.1
Bhattacharyya, S.N.2
Filipowicz, W.3
-
3
-
-
66849089596
-
Toward a structural understanding of IRES RNA function
-
Filbina, M.E. and Kieft, J.S. (2009) Toward a structural understanding of IRES RNA function. Curr. Opin. Struct. Biol., 19, 267-276.
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 267-276
-
-
Filbina, M.E.1
Kieft, J.S.2
-
5
-
-
35949038838
-
Thermodynamic fluctuations in a reacting system - Measurement by fluorescence correlation spectroscopy
-
Magde, D., Elson, E. and Webb, W.W. (1972) Thermodynamic fluctuations in a reacting system - measurement by fluorescence correlation spectroscopy. Phys. Rev. Lett., 29, 705-708.
-
(1972)
Phys. Rev. Lett.
, vol.29
, pp. 705-708
-
-
Magde, D.1
Elson, E.2
Webb, W.W.3
-
6
-
-
1542304184
-
Rotational brownian motion and fluorescence intensity fluctuations
-
Ehrenberg, M. and Rigler, R. (1974) Rotational brownian motion and fluorescence intensity fluctuations. Chem. Phys., 4, 390-401.
-
(1974)
Chem. Phys.
, vol.4
, pp. 390-401
-
-
Ehrenberg, M.1
Rigler, R.2
-
7
-
-
0014085985
-
Observation of the spectrum of light scattered by solutions of biological macromolecules
-
Dubin, S.B., Lunacek, J.H. and Benedek, G.B. (1967) Observation of the spectrum of light scattered by solutions of biological macromolecules. Proc. Natl Acad. Sci. USA, 57, 1164-1171.
-
(1967)
Proc. Natl Acad. Sci. USA
, vol.57
, pp. 1164-1171
-
-
Dubin, S.B.1
Lunacek, J.H.2
Benedek, G.B.3
-
8
-
-
0015457756
-
Quasielastic light scattering from macromolecules
-
Pecora, R. (1972) Quasielastic light scattering from macromolecules. Annu. Rev. Biophys. Bioeng. Chem., 1, 254-276.
-
(1972)
Annu. Rev. Biophys. Bioeng. Chem.
, vol.1
, pp. 254-276
-
-
Pecora, R.1
-
9
-
-
0035038173
-
Fluorescence correlation spectroscopy as a new method for the investigation of aptamer/target interactions
-
Schurer, H., Buchynsky, A., Korn, K., Famulok, M., Welzel, P. and Hahn, U. (2001) Fluorescence correlation spectroscopy as a new method for the investigation of aptamer/target interactions. Biol. Chem, 382, 47948.
-
(2001)
Biol. Chem
, vol.382
, pp. 47948
-
-
Schurer, H.1
Buchynsky, A.2
Korn, K.3
Famulok, M.4
Welzel, P.5
Hahn, U.6
-
10
-
-
67349134722
-
Characterization of a fluorophore binding RNA aptamer by fluorescence correlation spectroscopy and small angle X-ray scattering
-
Werner, A., Konarev, P.V., Svergun, D.I. and Hahn, U. (2009) Characterization of a fluorophore binding RNA aptamer by fluorescence correlation spectroscopy and small angle X-ray scattering. Anal. Biochem., 389, 52-62.
-
(2009)
Anal. Biochem.
, vol.389
, pp. 52-62
-
-
Werner, A.1
Konarev, P.V.2
Svergun, D.I.3
Hahn, U.4
-
11
-
-
56649122127
-
Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells
-
Ohrt, T., Mutze, J., Staroske, W., Weinmann, L., Hock, J., Crell, K., Meister, G. and Schwille, P. (2008) Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells. Nucleic Acids Res., 36, 6439-6449.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6439-6449
-
-
Ohrt, T.1
Mutze, J.2
Staroske, W.3
Weinmann, L.4
Hock, J.5
Crell, K.6
Meister, G.7
Schwille, P.8
-
12
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNP machine
-
Wahl, M.C., Will, C.L. and Luhrmann, R. (2009) The spliceosome: design principles of a dynamic RNP machine. Cell, 136, 701-718.
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Luhrmann, R.3
-
13
-
-
4243642135
-
Comparism of theories for the translational and rotational diffusion coefficients of rod-like macromolecules. Applications to short DNA fragments
-
Tirado, M.M., Martinez, C.L. and Garča De La Torre, J. (1984) Comparism of theories for the translational and rotational diffusion coefficients of rod-like macromolecules. Applications to short DNA fragments. J. Chem. Phys., 81, 2047-2052.
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 2047-2052
-
-
Tirado, M.M.1
Martinez, C.L.2
Garča De La Torre, J.3
-
16
-
-
0033549817
-
Tertiary motifs in RNA structure and folding
-
DOI 10.1002/(SICI)1521-3773(19990816)38:16<2326::AID-ANIE2326>3.0. CO;2-3
-
Batey, R.T., Rambo, R.P. and Doudna, J.A. (1999) Tertiary motifs in RNA structure and folding. Angew. Chem. Int. Ed., 38, 2326-2343. (Pubitemid 29399554)
-
(1999)
Angewandte Chemie - International Edition
, vol.38
, Issue.16
, pp. 2326-2343
-
-
Batey, R.T.1
Rambo, R.P.2
Doudna, J.A.3
-
17
-
-
34147104014
-
Bridging the gap in RNA structure prediction
-
DOI 10.1016/j.sbi.2007.03.001, PII S0959440X07000310, Theory and Simulation / Mecromolecular Assemblages
-
Shapiro, B.A., Yingling, Y.G., Kasprzak, W. and Bindewald, E. (2007) Bridging the gap in RNA structure prediction. Curr. Opin. Struct. Biol., 17, 157-165. (Pubitemid 46575248)
-
(2007)
Current Opinion in Structural Biology
, vol.17
, Issue.2
, pp. 157-165
-
-
Shapiro, B.A.1
Yingling, Y.G.2
Kasprzak, W.3
Bindewald, E.4
-
18
-
-
0033039369
-
Hydrodynamic properties of rigid particles: Comparison of different modeling and computational procedures
-
Carrasco, B. and Garča De La Torre, J. (1999) Hydrodynamic properties of rigid particles comparison of different modeling and computational procedures. Biophys. J., 75, 3044-3057. (Pubitemid 29269452)
-
(1999)
Biophysical Journal
, vol.76
, Issue.6
, pp. 3044-3057
-
-
Carrasco, B.1
De La Torre, J.G.2
-
19
-
-
0002821446
-
Mouvement Brownien d'un ellipsoide. I. Translation et diffusion de molecules ellipsoidales
-
Perrin, F. (1936) Mouvement Brownien d'un ellipsoide. I. Translation et diffusion de molecules ellipsoidales. J. Phys. Radium, 7, 1-11.
-
(1936)
J. Phys. Radium
, vol.7
, pp. 1-11
-
-
Perrin, F.1
-
20
-
-
0001229341
-
Calculation of hydrodynamic properties of globular proteins from their atomic-level structure
-
Garča De La Torre, J., Huertas, M.L. and Carrasco, B. (2000) Calculation of hydrodynamic properties of globular proteins from their atomic-level structure. Biophys. J. 78, 719-730. (Pubitemid 30211830)
-
(2000)
Biophysical Journal
, vol.78
, Issue.2
, pp. 719-730
-
-
Garcia De La Torre, J.1
Huertas, M.L.2
Carrasco, B.3
-
21
-
-
0014057375
-
Frictional coefficients of multisubunit structures
-
Bloomfield, V.A., Dalton, W.O. and Holde, K.E.V. (1967) Frictional coefficients of multisubunit structures. I. Theory. Biopolymers, 5, 135-148.
-
(1967)
I. Theory. Biopolymers
, vol.5
, pp. 135-148
-
-
Bloomfield, V.A.1
Dalton, W.O.2
Holde, K.E.V.3
-
22
-
-
0014057375
-
Frictional coefficients of multisubunit structures
-
Bloomfield, V.A., Dalton, W.O. and Holde, K.E.V. (1967) Frictional coefficients of multisubunit structures. Theory. Biopolymers, 5, 135-148.
-
(1967)
Theory. Biopolymers
, vol.5
, pp. 135-148
-
-
Bloomfield, V.A.1
Dalton, W.O.2
Holde, K.E.V.3
-
23
-
-
0037089151
-
Calculation of hydrodynamic properties of small nucleic acids from their atomic structure
-
Fernandez, M.X., Ortega, A., Martinez, M.C.L. and Garča De La Torre, J. (2002) Calculation of hydrodynamic properties of small nucleic acids from their atomic structure. Nucleic Acids Res., 30, 1782-1788. (Pubitemid 34679756)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.8
, pp. 1782-1788
-
-
Fernandes, M.X.1
Ortega, A.2
Lopez Martinez, M.C.3
Garcia De La Torre, J.4
-
24
-
-
28544445024
-
Compact and ordered collapse of randomly generated RNA sequences
-
DOI 10.1038/nsmb1014
-
Schultes, E.A., Spasic, A., Mohanty, U. and Bartel, D.P. (2005) Compact and ordered collapse of randomly generated RNA sequences. Nat. Struct. Mol. Biol., 12, 1130-1136. (Pubitemid 41746785)
-
(2005)
Nature Structural and Molecular Biology
, vol.12
, Issue.12
, pp. 1130-1136
-
-
Schultes, E.A.1
Spasic, A.2
Mohanty, U.3
Bartel, D.P.4
-
25
-
-
33845638783
-
Discovering the RNA Double Helix and Hybridization
-
DOI 10.1016/j.cell.2006.12.008, PII S0092867406015984
-
Varshavsky, A. (2006) Discovering the RNA double helix and hybridization. Cell, 127, 1295-1297. (Pubitemid 44960418)
-
(2006)
Cell
, vol.127
, Issue.7
, pp. 1295-1297
-
-
Varshavsky, A.1
-
26
-
-
0015721490
-
Structures of synthetic polynucleotides in the A-RNA and A'-RNA conformations: X-ray diffraction analyses of the molecular conformations of polyadenylic acid polyuridylic acid and polyinosinic acid polycytidylic acid
-
Arnott, S., Hukins, D.W., Dover, S.D., Fuller, W. and Hodgson, A.R. (1973) Structures of synthetic polynucleotides in the A-RNA and A'-RNA conformations: X-ray diffraction analyses of the molecular conformations of polyadenylic acid polyuridylic acid and polyinosinic acid polycytidylic acid. J. Mol. Biol., 81, 107-122.
-
(1973)
J. Mol. Biol.
, vol.81
, pp. 107-122
-
-
Arnott, S.1
Hukins, D.W.2
Dover, S.D.3
Fuller, W.4
Hodgson, A.R.5
-
27
-
-
0347357615
-
Recognition of small interfering RNA by a viral suppressor of RNA silencing
-
DOI 10.1038/nature02213
-
Ye, K., Malinina, L. and Patel, D.J. (2003) Recognition of small interfering RNA by a viral suppressor of RNA silencing. Nature, 426, 874-878. (Pubitemid 38056877)
-
(2003)
Nature
, vol.426
, Issue.6968
, pp. 874-878
-
-
Ye, K.1
Malinina, L.2
Patel, D.J.3
-
28
-
-
12544256134
-
Calculation of standard atomic volumes for RNA and comparison with proteins: RNA is packed more tightly
-
Voss, N.R. and Gerstein, M. (2005) Calculation of standard atomic volumes for RNA and comparison with proteins: RNA is packed more tightly. J. Mol. Biol., 346, 477-492.
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 477-492
-
-
Voss, N.R.1
Gerstein, M.2
-
31
-
-
0033954256
-
The Protein Data Bank
-
Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N. and Bourne, P.E. (2000) The Protein Data Bank. Nucleic Acid Res., 28, 235-242. (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
32
-
-
65549163541
-
Frequency and isostericity of RNA base pairs
-
Stombaugh, J., Zirbel, C.L., Westhof, E. and Leontis, N.B. (2009) Frequency and isostericity of RNA base pairs. Nucleic Acids Res., 37, 2294-2312.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 2294-2312
-
-
Stombaugh, J.1
Zirbel, C.L.2
Westhof, E.3
Leontis, N.B.4
-
33
-
-
38149006279
-
Self-association of adenine-dependent hairpin ribozymes
-
Li, Y.-L., Maurel, M.-C., Ebel, C., Vergne, J., Pipich, V. and Zaccai, G. (2008) Self-association of adenine-dependent hairpin ribozymes. Eur. Biophys. J., 37, 173-182.
-
(2008)
Eur. Biophys. J.
, vol.37
, pp. 173-182
-
-
Li, Y.-L.1
Maurel, M.-C.2
Ebel, C.3
Vergne, J.4
Pipich, V.5
Zaccai, G.6
-
34
-
-
76549124254
-
Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 30 UTR of turnip crinkle virus
-
Zuo, X., Wang, J., Yu, P., Eyler, D., Xu, H., Starich, M.R., Tiede, D.M., Simon, A.E., Kasprzak, W., Schwieters, C.D. et al. (2009) Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 30 UTR of turnip crinkle virus. Proc. Natl Acad. Sci. USA., 107, 1385-1390.
-
(2009)
Proc. Natl Acad. Sci. USA.
, vol.107
, pp. 1385-1390
-
-
Zuo, X.1
Wang, J.2
Yu, P.3
Eyler, D.4
Xu, H.5
Starich, M.R.6
Tiede, D.M.7
Simon, A.E.8
Kasprzak, W.9
Schwieters, C.D.10
-
35
-
-
33646560930
-
Diffusion of isolated DNA molecules: Dependence on length and topology
-
DOI 10.1073/pnas.0601903103
-
Robertson, R.M., Laib, S. and Smith, D.E. (2006) Diffusion of isolated DNA molecules: Dependence on length and topology. Proc. Natl Acad. Sci. USA, 106, 7310-7314. (Pubitemid 43727829)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.19
, pp. 7310-7314
-
-
Robertson, R.M.1
Laib, S.2
Smith, D.E.3
-
36
-
-
33845328453
-
Size, shape, and flexibility of RNA structures
-
Hyeon, C., Dima, R.I. and Thirumalai, D. (2006) Size, shape, and flexibility of RNA structures. J. Chem. Phys., 125, 194905.
-
(2006)
J. Chem. Phys.
, vol.125
, pp. 194905
-
-
Hyeon, C.1
Dima, R.I.2
Thirumalai, D.3
-
37
-
-
77953648210
-
On the significance of an RNA tertiary structure prediction
-
Hajdin, C.E., Ding, F., Dokholyan, N.V. and Weeks, K.M. (2010) On the significance of an RNA tertiary structure prediction. RNA, 16, 1340-1349.
-
(2010)
RNA
, vol.16
, pp. 1340-1349
-
-
Hajdin, C.E.1
Ding, F.2
Dokholyan, N.V.3
Weeks, K.M.4
-
39
-
-
66549124907
-
The structures of quadruplex nucleic acids and their drug complexes
-
Neidle, S. (2009) The structures of quadruplex nucleic acids and their drug complexes. Curr. Opin. Struct. Biol., 19, 239-250.
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 239-250
-
-
Neidle, S.1
-
40
-
-
0347383756
-
Looking behind the Beamstop: X-Ray Solution Scattering Studies of Structure and Conformational Changes of Biological Macromolecules
-
DOI 10.1016/S0076-6879(03)74024-5
-
Vachette, P., Koch, M.H.J. and Svergun, D.I. (2003) Looking behind the Beamstop: X-ray solution scattering studies of structure and conformational changes of biological macromolecules. Methods Enzym., 374, 584-615. (Pubitemid 37531825)
-
(2003)
Methods in Enzymology
, vol.374
, pp. 584-615
-
-
Vachette, P.1
Koch, M.H.J.2
Svergun, D.I.3
-
41
-
-
55849126359
-
Predicting the sizes of large RNA molecules
-
Yoffe, A.M., Prinsen, P., Gopal, A., Knobler, C.M., Gelbart, W.M. and Ben-Shaul, A. (2008) Predicting the sizes of large RNA molecules. Proc. Natl Acad. Sci. USA, 105, 16153-16158.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 16153-16158
-
-
Yoffe, A.M.1
Prinsen, P.2
Gopal, A.3
Knobler, C.M.4
Gelbart, W.M.5
Ben-Shaul, A.6
-
42
-
-
0030759786
-
Global similarities in nucleotide base composition among disparate functional classes of single-stranded RNA imply adaptive evolutionary convergence
-
Schultes, E., Hraber, P.T. and LaBean, T.H. (1997) Global similarities in nucleotide base composition among disparate functional classes of single-stranded RNA imply adaptive evolutionary convergence. RNA, 3, 792-806. (Pubitemid 27291122)
-
(1997)
RNA
, vol.3
, Issue.7
, pp. 792-806
-
-
Schultes, E.1
Hraber, P.T.2
Labean, T.H.3
-
43
-
-
29844452150
-
Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories
-
DOI 10.1261/rna.2183806
-
Smit, S., Yarus, M. and Knight, R. (2006) Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories. RNA, 12, 1-14. (Pubitemid 43037448)
-
(2006)
RNA
, vol.12
, Issue.1
, pp. 1-14
-
-
Smit, S.1
Yarus, M.2
Knight, R.3
-
44
-
-
0019444074
-
Laser light-scattering analysis of the dimerization of transfer ribonucleic acids with complementary anticodons
-
Wang, C.C., Ford, N.C.J. and Fournier, M.J. (1981) Laser light-scattering analysis of the dimerization of transfer ribonucleic acids with complementary anticodons. Biopolymers, 20, 155-168.
-
(1981)
Biopolymers
, vol.20
, pp. 155-168
-
-
Wang, C.C.1
Ford, N.C.J.2
Fournier, M.J.3
-
45
-
-
0032081319
-
2+ binding and structural stability of mature and in vitro synthesized unmodified Escherichia coli tRNA(Phe)
-
DOI 10.1093/nar/26.11.2723
-
Phe. Nucleic Acids Res., 26, 2723-2728. (Pubitemid 28297388)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.11
, pp. 2723-2728
-
-
Serebrov, V.1
Vassilenko, K.2
Kholod, N.3
Gross, H.J.4
Kisselev, L.5
-
46
-
-
58249113390
-
Comparison and functional implications of the 3D architectures of viral tRNA-like structures
-
Hammond, J., Rambo, R.R., Filbin, M.E. and Kieft, J.S. (2009) Comparison and functional implications of the 3D architectures of viral tRNA-like structures. RNA, 15, 294-307.
-
(2009)
RNA
, vol.15
, pp. 294-307
-
-
Hammond, J.1
Rambo, R.R.2
Filbin, M.E.3
Kieft, J.S.4
-
47
-
-
0023733792
-
An elongated model of the Xenopus laevis transcription factor IIIA-5S ribosomal RNA complex derived from neutron scattering and hydrodynamic measurements
-
Timmins, P.A., Langowski, J. and Brown, R.S. (1988) An elongated model of the Xenopus laevis transcription factor IIIA-5S ribosomal RNA complex derived from neutron scattering and hydrodynamic measurements. Nucleic Acids Res., 16, 8633-8644.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 8633-8644
-
-
Timmins, P.A.1
Langowski, J.2
Brown, R.S.3
-
48
-
-
1242269420
-
Structural Similarity of E. coli 5S rRNA in Solution and within the Ribosome
-
DOI 10.1002/bip.10598
-
Skibinska, L., Banachowicz, E., Gapinski, J., Patkowski, A. and Barciszewski, J. (2004) Structural similarity of E. coli 5S rRNA in solution and within the ribosome. Biopolymers, 73, 316-325. (Pubitemid 38222206)
-
(2004)
Biopolymers
, vol.73
, Issue.3
, pp. 316-325
-
-
Skibinska, L.1
Banachowicz, E.2
Gapinski, J.3
Patkowski, A.4
Barciszewski, J.5
-
49
-
-
0022523580
-
Comparison of the structure of ribosomal 5S RNA from E. coli and from rat liver using X-ray scattering and dynamic light scattering
-
Muller, J.J., Zalkova, T.N., Zirwer, D., Misselwitz, R., Gast, K., Serdyuk, I.N., Welfle, H. and Damaschun, G. (1986) Comparison of the structure of ribosomal 5S RNA from E. coli and from rat liver using X-ray scattering and dynamic light scattering. Eur. Biophys. J., 13, 301-307.
-
(1986)
Eur. Biophys. J.
, vol.13
, pp. 301-307
-
-
Muller, J.J.1
Zalkova, T.N.2
Zirwer, D.3
Misselwitz, R.4
Gast, K.5
Serdyuk, I.N.6
Welfle, H.7
Damaschun, G.8
-
50
-
-
13944276301
-
A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs
-
Constantino, D. and Kiefft, J.S. (2010) A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs. RNA, 11, 332-343.
-
(2010)
RNA
, vol.11
, pp. 332-343
-
-
Constantino, D.1
Kiefft, J.S.2
-
51
-
-
34548253368
-
Structure and Mechanism of a Metal-Sensing Regulatory RNA
-
DOI 10.1016/j.cell.2007.06.051, PII S0092867407009014
-
Dann, C.E., Wakeman, C.A., Sieling, C.L., Baker, S.C., Irnov, I. and Winkler, W.C. (2007) Structure and mechanism of a metal-sensing regulatory RNA. Cell, 130, 878-892. (Pubitemid 47332567)
-
(2007)
Cell
, vol.130
, Issue.5
, pp. 878-892
-
-
Dann III, C.E.1
Wakeman, C.A.2
Sieling, C.L.3
Baker, S.C.4
Irnov, I.5
Winkler, W.C.6
-
52
-
-
0024282468
-
Phe
-
Phe. FEBS Lett., 232, 107-110.
-
(1988)
FEBS Lett.
, vol.232
, pp. 107-110
-
-
Tuzikov, F.1
Zinoviev, V.2
Vavilin, V.3
Maligin, E.4
Ankilova, V.5
Moor, N.6
Lavrik, O.I.7
-
53
-
-
77149165421
-
Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis
-
Baird, N.J. and Ferre-D'Amare, A.R. (2010) Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis. RNA, 16, 598-609.
-
(2010)
RNA
, vol.16
, pp. 598-609
-
-
Baird, N.J.1
Ferre-D'Amare, A.R.2
-
54
-
-
74649084566
-
The Ligand-Free State of the TPP Riboswitch: A Partially Folded RNA Structure
-
Ali, M., Lipfert, J., Seifert, S., Herschlag, D. and Doniach, S. (2010) The Ligand-Free State of the TPP Riboswitch: A Partially Folded RNA Structure. J. Mol. Biol., 396, 153-165.
-
(2010)
J. Mol. Biol.
, vol.396
, pp. 153-165
-
-
Ali, M.1
Lipfert, J.2
Seifert, S.3
Herschlag, D.4
Doniach, S.5
-
55
-
-
71449123530
-
Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch
-
Kulshina, N., Baird, N.J. and Ferre-D'Amare, A.R. (2009) Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch. Nat. Struct. Mol. Biol., 16, 1212-1218.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1212-1218
-
-
Kulshina, N.1
Baird, N.J.2
Ferre-D'Amare, A.R.3
-
56
-
-
0034613196
-
Structure of free Thermus flavus 5 S rRNA at 1.3nm resolution from synchrotron X-ray solution scattering
-
Funari, S.S., Rapp, G., Perbandt, M., Dierks, K., Vallazza, M., Betzel, C., Erdmann, V.A. and Svergun, D.I. (2000) Structure of free Thermus flavus 5 S rRNA at 1.3nm resolution from synchrotron X-ray solution scattering. J. Biol. Chem., 275, 31283-31288.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 31283-31288
-
-
Funari, S.S.1
Rapp, G.2
Perbandt, M.3
Dierks, K.4
Vallazza, M.5
Betzel, C.6
Erdmann, V.A.7
Svergun, D.I.8
-
57
-
-
0017135053
-
Molecular model for 5-S RNA
-
Osterberg, R., Sjoberg, B. and Garrett, R.A. (1976) Molecular model for 5-S RNA. Eur. J. Biochem., 68, 481-487.
-
(1976)
Eur. J. Biochem.
, vol.68
, pp. 481-487
-
-
Osterberg, R.1
Sjoberg, B.2
Garrett, R.A.3
-
58
-
-
77950520874
-
Extended structures in RNA folding intermediates are due to nonnative interactions rather than electrostatic repulsion
-
Baird, N.J., Gong, H., Zaheer, S.S., Freed, K.F., Pan, T. and Sosnick, T.R. (2010) Extended structures in RNA folding intermediates are due to nonnative interactions rather than electrostatic repulsion. J. Mol. Biol., 397, 1298-1306.
-
(2010)
J. Mol. Biol.
, vol.397
, pp. 1298-1306
-
-
Baird, N.J.1
Gong, H.2
Zaheer, S.S.3
Freed, K.F.4
Pan, T.5
Sosnick, T.R.6
-
59
-
-
77149170364
-
Improving small-angle X-ray scattering data for structural analyses of the RNA world
-
Rambo, R.P. and Tainer, J.A. (2010) Improving small-angle X-ray scattering data for structural analyses of the RNA world. RNA, 16, 638-646.
-
(2010)
RNA
, vol.16
, pp. 638-646
-
-
Rambo, R.P.1
Tainer, J.A.2
-
60
-
-
53049094260
-
Crystal structure of the lysine riboswitch regulatory mRNA element
-
Garst, A., Heroux, A., Rambo, R.P. and Batey, R.T. (2008) Crystal structure of the lysine riboswitch regulatory mRNA element. J. Biol. Chem., 283, 22347-22351.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 22347-22351
-
-
Garst, A.1
Heroux, A.2
Rambo, R.P.3
Batey, R.T.4
-
61
-
-
1042265194
-
Compaction of a Bacterial Group I Ribozyme Coincides with the Assembly of Core Helices
-
DOI 10.1021/bi035642o
-
Perez-Salas, U.A., Rangan, P., Krueger, S., Briber, R.M., Thirumalai, D. and Woodson, S.A. (2004) Compaction of a bacterial group I ribozyme coincides with the assembly of core helices. Biochemistry, 43, 1746-1753. (Pubitemid 38200581)
-
(2004)
Biochemistry
, vol.43
, Issue.6
, pp. 1746-1753
-
-
Perez-Salas, U.A.1
Rangan, P.2
Krueger, S.3
Briber, R.M.4
Thirumalai, D.5
Woodson, S.A.6
-
62
-
-
70349786532
-
Metal ion dependence of cooperative collapse transitions in RNA
-
Moghaddam, S., Caliskan, G., Chauhan, S., Hyeon, C., Briber, R.M., Thirumalai, D. and Woodson, S.A. (2009) Metal ion dependence of cooperative collapse transitions in RNA. J. Mol. Biol., 393, 753-764.
-
(2009)
J. Mol. Biol.
, vol.393
, pp. 753-764
-
-
Moghaddam, S.1
Caliskan, G.2
Chauhan, S.3
Hyeon, C.4
Briber, R.M.5
Thirumalai, D.6
Woodson, S.A.7
-
63
-
-
33845971464
-
Structural Transitions and Thermodynamics of a Glycine-Dependent Riboswitch from Vibrio cholerae
-
DOI 10.1016/j.jmb.2006.10.022, PII S002228360601360X
-
Lipfert, J., Das, R., Chu, V.B., Kudaravalli, M., Boyd, N., Herschlag, D. and Doniach, S. (2007) Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae. J. Mol. Biol., 365, 1393-1406. (Pubitemid 46048825)
-
(2007)
Journal of Molecular Biology
, vol.365
, Issue.5
, pp. 1393-1406
-
-
Lipfert, J.1
Das, R.2
Chu, V.B.3
Kudaravalli, M.4
Boyd, N.5
Herschlag, D.6
Doniach, S.7
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