-
2
-
-
17144392600
-
TRNA-linked molecular beacons for imaging mRNAs in the cytoplasm of living cells
-
Mhlanga M.M., Vargas D.Y., Fung C.W., Kramer F.R., and Tyagi S. TRNA-linked molecular beacons for imaging mRNAs in the cytoplasm of living cells. Nucleic Acids Res. 33 (2005) 1902-1912
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1902-1912
-
-
Mhlanga, M.M.1
Vargas, D.Y.2
Fung, C.W.3
Kramer, F.R.4
Tyagi, S.5
-
3
-
-
33746484594
-
Identification of single-point mutations in mycobacterial 16S rRNA sequences by confocal single-molecule fluorescence spectroscopy
-
Marmé N., Friedrich A., Müller M., Nolte O., Wolfrum J., Hoheisel J.D., Sauer M., and Knemeyer J.-P. Identification of single-point mutations in mycobacterial 16S rRNA sequences by confocal single-molecule fluorescence spectroscopy. Nucleic Acids Res. 34 (2006) e90
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Marmé, N.1
Friedrich, A.2
Müller, M.3
Nolte, O.4
Wolfrum, J.5
Hoheisel, J.D.6
Sauer, M.7
Knemeyer, J.-P.8
-
4
-
-
0347156907
-
Single mRNA molecules demonstrate probabilistic movement in living mammalian cells
-
Fusco D., Accornero N., Lavoie B., Shenoy S., Blanchard J., Singer R., and Bertrand E. Single mRNA molecules demonstrate probabilistic movement in living mammalian cells. Curr. Biol. 13 (2003) 161-167
-
(2003)
Curr. Biol.
, vol.13
, pp. 161-167
-
-
Fusco, D.1
Accornero, N.2
Lavoie, B.3
Shenoy, S.4
Blanchard, J.5
Singer, R.6
Bertrand, E.7
-
5
-
-
0032185810
-
Localization of ASH1 mRNA particles in living yeast
-
Bertrand E., Chartrand P., Schaefer M., Shenoy S.M., Singer R.H., and Long R.M. Localization of ASH1 mRNA particles in living yeast. Mol. Cell 2 (1998) 437-445
-
(1998)
Mol. Cell
, vol.2
, pp. 437-445
-
-
Bertrand, E.1
Chartrand, P.2
Schaefer, M.3
Shenoy, S.M.4
Singer, R.H.5
Long, R.M.6
-
6
-
-
0032503999
-
Specific covalent labeling of recombinant protein molecules inside live cells
-
Griffin B.A., Adams S.R., and Tsien R.Y. Specific covalent labeling of recombinant protein molecules inside live cells. Science 281 (1998) 269-272
-
(1998)
Science
, vol.281
, pp. 269-272
-
-
Griffin, B.A.1
Adams, S.R.2
Tsien, R.Y.3
-
7
-
-
0025074907
-
In vitro selection of RNA molecules that bind specific ligands
-
Ellington A.D., and Szostak J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 346 (1990) 818-822
-
(1990)
Nature
, vol.346
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
8
-
-
0033033283
-
Laser-mediated, site-specific inactivation of RNA transcripts
-
Grate D., and Wilson C. Laser-mediated, site-specific inactivation of RNA transcripts. Proc. Natl. Acad. Sci. USA 96 (1999) 6131-6136
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6131-6136
-
-
Grate, D.1
Wilson, C.2
-
9
-
-
0032437793
-
Isolation and characterization of fluorophore-binding RNA aptamers
-
Holeman L.A., Robinson S.L., Szostak J.W., and Wilson C. Isolation and characterization of fluorophore-binding RNA aptamers. Fold. Des. 3 (1998) 423-431
-
(1998)
Fold. Des.
, vol.3
, pp. 423-431
-
-
Holeman, L.A.1
Robinson, S.L.2
Szostak, J.W.3
Wilson, C.4
-
10
-
-
0344430112
-
Aptamers switch on fluorescence of triphenylmethane dyes
-
Babendure J.R., Adams S.R., and Tsien R.Y. Aptamers switch on fluorescence of triphenylmethane dyes. J. Am. Chem. Soc. 125 (2003) 14716-14717
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 14716-14717
-
-
Babendure, J.R.1
Adams, S.R.2
Tsien, R.Y.3
-
12
-
-
35949038838
-
Thermodynamic fluctuations in a reacting system: measurement by fluorescence correlation spectroscopy
-
Magde D., Elson E., and Webb W.W. Thermodynamic fluctuations in a reacting system: measurement by fluorescence correlation spectroscopy. Phys. Rev. Lett. 29 (1972) 705-708
-
(1972)
Phys. Rev. Lett.
, vol.29
, pp. 705-708
-
-
Magde, D.1
Elson, E.2
Webb, W.W.3
-
13
-
-
0028229903
-
Sorting single molecules: application to diagnostics and evolutionary biotechnology
-
Eigen M., and Rigler R. Sorting single molecules: application to diagnostics and evolutionary biotechnology. Proc. Natl. Acad. Sci. USA 91 (1994) 5740-5747
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 5740-5747
-
-
Eigen, M.1
Rigler, R.2
-
14
-
-
1542304184
-
Rotational Brownian motion and fluorescence intensity fluctuations
-
Ehrenberg M., and Rigler R. Rotational Brownian motion and fluorescence intensity fluctuations. Chem. Phys. 4 (1974) 390-401
-
(1974)
Chem. Phys.
, vol.4
, pp. 390-401
-
-
Ehrenberg, M.1
Rigler, R.2
-
15
-
-
0036175642
-
Fluorescence correlation spectroscopy: the technique and its applications
-
Krichevsky O., and Bonnet G. Fluorescence correlation spectroscopy: the technique and its applications. Rep. Prog. Phys. 65 (2002) 251-297
-
(2002)
Rep. Prog. Phys.
, vol.65
, pp. 251-297
-
-
Krichevsky, O.1
Bonnet, G.2
-
16
-
-
30744453769
-
Encapsulation of fluorescent molecules by functionalized polymeric nanocontainers: investigation by confocal fluorescence imaging and fluorescence correlation spectroscopy
-
Rigler P., and Meier W. Encapsulation of fluorescent molecules by functionalized polymeric nanocontainers: investigation by confocal fluorescence imaging and fluorescence correlation spectroscopy. J. Am. Chem. Soc. 128 (2006) 367-373
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 367-373
-
-
Rigler, P.1
Meier, W.2
-
18
-
-
0033021689
-
Resolution of fluorescence correlation measurements
-
Meseth U., Wohland T., Rigler R., and Vogel H. Resolution of fluorescence correlation measurements. Biophys. J. 76 (1999) 1619-1631
-
(1999)
Biophys. J.
, vol.76
, pp. 1619-1631
-
-
Meseth, U.1
Wohland, T.2
Rigler, R.3
Vogel, H.4
-
19
-
-
2342614735
-
The LSM 510 META-ConfoCor 2 System: an integrated imaging and spectroscopic platform for single-molecule detection
-
Weisshart K., Jüngel V., and Briddon S.J. The LSM 510 META-ConfoCor 2 System: an integrated imaging and spectroscopic platform for single-molecule detection. Curr. Pharm. Biotechnol. 5 (2004) 135-154
-
(2004)
Curr. Pharm. Biotechnol.
, vol.5
, pp. 135-154
-
-
Weisshart, K.1
Jüngel, V.2
Briddon, S.J.3
-
20
-
-
25844507533
-
Determining protease activity in vivo by fluorescence cross-correlation analysis
-
Kohl T., Haustein E., and Schwille P. Determining protease activity in vivo by fluorescence cross-correlation analysis. Biophys. J. 89 (2005) 2770-2782
-
(2005)
Biophys. J.
, vol.89
, pp. 2770-2782
-
-
Kohl, T.1
Haustein, E.2
Schwille, P.3
-
21
-
-
29244457581
-
Dissociation of nuclear import cargo complexes by the protein Ran: a fluorescence correlation spectroscopy study
-
Fradin C., Zbaida D., and Elbaum M. Dissociation of nuclear import cargo complexes by the protein Ran: a fluorescence correlation spectroscopy study. C. R. Biologies 328 (2005) 1073-1082
-
(2005)
C. R. Biologies
, vol.328
, pp. 1073-1082
-
-
Fradin, C.1
Zbaida, D.2
Elbaum, M.3
-
22
-
-
0030895059
-
Dual-color fluorescence cross-correlation spectroscopy for multicomponent diffusional analysis in solution
-
Schwille P., Meyer-Almes F.-J., and Rigler R. Dual-color fluorescence cross-correlation spectroscopy for multicomponent diffusional analysis in solution. Biophys. J. 72 (1997) 1878-1886
-
(1997)
Biophys. J.
, vol.72
, pp. 1878-1886
-
-
Schwille, P.1
Meyer-Almes, F.-J.2
Rigler, R.3
-
23
-
-
35748931313
-
Practical guidelines for dual-color fluorescence cross-correlation spectroscopy
-
Bacia K., and Schwille P. Practical guidelines for dual-color fluorescence cross-correlation spectroscopy. Nat. Protoc. 2 (2007) 2842-2856
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2842-2856
-
-
Bacia, K.1
Schwille, P.2
-
24
-
-
0000397420
-
Statistical accuracy in fluorescence correlation spectroscopy
-
Koppel D.E. Statistical accuracy in fluorescence correlation spectroscopy. Phys. Rev. 10 (1974) 1938-1945
-
(1974)
Phys. Rev.
, vol.10
, pp. 1938-1945
-
-
Koppel, D.E.1
-
25
-
-
0034840623
-
A simple and efficient method to reduce nontemplated nucleotide addition at the 3′ terminus of RNAs transcribed by T7 RNA polymerase
-
Kao C., Zheng M., and Rüdisser S. A simple and efficient method to reduce nontemplated nucleotide addition at the 3′ terminus of RNAs transcribed by T7 RNA polymerase. Methods 23 (2001) 201-205
-
(2001)
Methods
, vol.23
, pp. 201-205
-
-
Kao, C.1
Zheng, M.2
Rüdisser, S.3
-
26
-
-
30344443115
-
Persistence length changes dramatically as RNA folds
-
Caliskan G., Hyeon C., Perez-Salas U., Briber R.M., Woodson S.A., and Thirumalai D. Persistence length changes dramatically as RNA folds. Phys. Rev. Lett. 95 (2005) 2683031-2683034
-
(2005)
Phys. Rev. Lett.
, vol.95
, pp. 2683031-2683034
-
-
Caliskan, G.1
Hyeon, C.2
Perez-Salas, U.3
Briber, R.M.4
Woodson, S.A.5
Thirumalai, D.6
-
27
-
-
0014085985
-
Observation of the spectrum of light scattered by solutions of biological macromolecules
-
Dubin S.B., Lunacek J.H., and Benedek G.B. Observation of the spectrum of light scattered by solutions of biological macromolecules. Proc. Natl. Acad. Sci. USA 57 (1967) 1164-1171
-
(1967)
Proc. Natl. Acad. Sci. USA
, vol.57
, pp. 1164-1171
-
-
Dubin, S.B.1
Lunacek, J.H.2
Benedek, G.B.3
-
28
-
-
0015457756
-
Quasielastic light scattering from macromolecules
-
Pecora R. Quasielastic light scattering from macromolecules. Annu. Rev. Biophys. Bioeng. Chem. 1 (1972) 254-276
-
(1972)
Annu. Rev. Biophys. Bioeng. Chem.
, vol.1
, pp. 254-276
-
-
Pecora, R.1
-
29
-
-
0026738834
-
Dynamic light scattering for study of solution conformation and dynamics of superhelical DNA
-
Langowski J., Kremer W., and Kapp U. Dynamic light scattering for study of solution conformation and dynamics of superhelical DNA. Methods Enzymol. 211 (1992) 430-448
-
(1992)
Methods Enzymol.
, vol.211
, pp. 430-448
-
-
Langowski, J.1
Kremer, W.2
Kapp, U.3
-
30
-
-
0242571958
-
Small-angle scattering studies of biological macromolecules in solution
-
Svergun D.I., and Koch M.H.J. Small-angle scattering studies of biological macromolecules in solution. Rep. Prog. Phys. 66 (2003) 1735-1782
-
(2003)
Rep. Prog. Phys.
, vol.66
, pp. 1735-1782
-
-
Svergun, D.I.1
Koch, M.H.J.2
-
31
-
-
34248347847
-
Upgrade of the small angle X-ray scattering beamline X33 at the EMBL Hamburg
-
Roessle M.W., Klaering R., Ristau U., Robrahn B., Jahn D., Gehrmann T., Konarev P.V., Round A., Fiedler S., Hermes S., and Svergun D.I. Upgrade of the small angle X-ray scattering beamline X33 at the EMBL Hamburg. J. Appl. Crystallogr. 40 (2007) 190-194
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 190-194
-
-
Roessle, M.W.1
Klaering, R.2
Ristau, U.3
Robrahn, B.4
Jahn, D.5
Gehrmann, T.6
Konarev, P.V.7
Round, A.8
Fiedler, S.9
Hermes, S.10
Svergun, D.I.11
-
32
-
-
0002720864
-
-
Kratky O., and Glatter O. (Eds), Academic Press, New York
-
Porod G. In: Kratky O., and Glatter O. (Eds). Small Angle X-ray Scattering (1982), Academic Press, New York 17-51
-
(1982)
Small Angle X-ray Scattering
, pp. 17-51
-
-
Porod, G.1
-
33
-
-
0141484613
-
PRIMUS: a Windows-PC based system for small-angle scattering data analysis
-
Konarev P.V., Volkov V.V., Sokolova A.V., Koch M.H.J., and Svergun D.I. PRIMUS: a Windows-PC based system for small-angle scattering data analysis. J. Appl. Crystallogr. 36 (2003) 1277-1282
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 1277-1282
-
-
Konarev, P.V.1
Volkov, V.V.2
Sokolova, A.V.3
Koch, M.H.J.4
Svergun, D.I.5
-
34
-
-
0001498978
-
La diffraction des rayons X aux trés petits angles: Application á l'étude de phénoménes ultramicroscopiques
-
Guinier A. La diffraction des rayons X aux trés petits angles: Application á l'étude de phénoménes ultramicroscopiques. Ann. Phys. 12 (1939) 166-237
-
(1939)
Ann. Phys.
, vol.12
, pp. 166-237
-
-
Guinier, A.1
-
35
-
-
0026910457
-
Determination of the regularisation parameter in indirect-transform methods using perceptual criteria
-
Svergun D.I. Determination of the regularisation parameter in indirect-transform methods using perceptual criteria. J. Appl. Crystallogr. 25 (1992) 495-503
-
(1992)
J. Appl. Crystallogr.
, vol.25
, pp. 495-503
-
-
Svergun, D.I.1
-
36
-
-
0033001996
-
Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing
-
Svergun D.I. Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing. Biophys. J. 76 (1999) 2879-2886
-
(1999)
Biophys. J.
, vol.76
, pp. 2879-2886
-
-
Svergun, D.I.1
-
37
-
-
23244455562
-
Global rigid body modelling of macromolecular complexes against small-angle scattering data
-
Petoukhov M.V., and Svergun D.I. Global rigid body modelling of macromolecular complexes against small-angle scattering data. Biophys. J. 89 (2005) 1237-1250
-
(2005)
Biophys. J.
, vol.89
, pp. 1237-1250
-
-
Petoukhov, M.V.1
Svergun, D.I.2
-
38
-
-
0029185933
-
CRYSOL: a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates
-
Svergun D.I., Barberato C., and Koch M.H.J. CRYSOL: a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates. J. Appl. Crystallogr. 28 (1995) 768-773
-
(1995)
J. Appl. Crystallogr.
, vol.28
, pp. 768-773
-
-
Svergun, D.I.1
Barberato, C.2
Koch, M.H.J.3
-
39
-
-
0034613196
-
Structure of free Thermus flavus 5S rRNA at 1.3 nm resolution from synchrotron X-ray solution scattering
-
Funari S., Rapp G., Perbandt M., Dierks K., Vallazza M., Betzel C., Erdmann V.A., and Svergun D.I. Structure of free Thermus flavus 5S rRNA at 1.3 nm resolution from synchrotron X-ray solution scattering. J. Biol. Chem. 275 (2000) 31283-31288
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 31283-31288
-
-
Funari, S.1
Rapp, G.2
Perbandt, M.3
Dierks, K.4
Vallazza, M.5
Betzel, C.6
Erdmann, V.A.7
Svergun, D.I.8
-
40
-
-
0030917170
-
RNA aptamers that specifically bind to a K Ras-derived farnesylated peptide
-
Gilbert B.A., Sha M., Wathen S.T., and Rando R.R. RNA aptamers that specifically bind to a K Ras-derived farnesylated peptide. Bioorg. Med. Chem. 5 (1997) 1115-1122
-
(1997)
Bioorg. Med. Chem.
, vol.5
, pp. 1115-1122
-
-
Gilbert, B.A.1
Sha, M.2
Wathen, S.T.3
Rando, R.R.4
-
41
-
-
0029900789
-
Conformational transitions monitored for single molecules in solution
-
Edman L., Mets U., and Rigler R. Conformational transitions monitored for single molecules in solution. Proc. Natl. Acad. Sci. USA 93 (1996) 6710-6715
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 6710-6715
-
-
Edman, L.1
Mets, U.2
Rigler, R.3
-
42
-
-
33748595282
-
Nucleobase-specific quenching of fluorescent dyes: I. Nucleobase one-electron redox potentials and their correlation with static and dynamic quenching efficiencies
-
Seidel C.A.M., Schulz A., and Sauer M.H.M. Nucleobase-specific quenching of fluorescent dyes: I. Nucleobase one-electron redox potentials and their correlation with static and dynamic quenching efficiencies. J. Phys. Chem. 100 (1996) 5541-5553
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 5541-5553
-
-
Seidel, C.A.M.1
Schulz, A.2
Sauer, M.H.M.3
-
43
-
-
1242269420
-
Structural similarity of E. coli 5S rRNA in solution and within the ribosome
-
Skibinska L., Banachowicz E., Gapinski J., Patkowski A., and Barciszewski J. Structural similarity of E. coli 5S rRNA in solution and within the ribosome. Biopolymers 73 (2004) 316-325
-
(2004)
Biopolymers
, vol.73
, pp. 316-325
-
-
Skibinska, L.1
Banachowicz, E.2
Gapinski, J.3
Patkowski, A.4
Barciszewski, J.5
-
46
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures
-
Hofacker I., Fontana W., Stadler P., Bonhoeffer S., Tacker M., and Schuster P. Fast folding and comparison of RNA secondary structures. Monatshefte Chemie 125 (1994) 167-188
-
(1994)
Monatshefte Chemie
, vol.125
, pp. 167-188
-
-
Hofacker, I.1
Fontana, W.2
Stadler, P.3
Bonhoeffer, S.4
Tacker, M.5
Schuster, P.6
-
47
-
-
33744979613
-
Partition function and base pairing probabilities of RNA heterodimers
-
Bernhart S.H., Tafer H., Mückstein U., Flamm C., Stadler P.F., and Hofacker I.L. Partition function and base pairing probabilities of RNA heterodimers. Algorithms Mol. Biol. 1 (2006) 1-3
-
(2006)
Algorithms Mol. Biol.
, vol.1
, pp. 1-3
-
-
Bernhart, S.H.1
Tafer, H.2
Mückstein, U.3
Flamm, C.4
Stadler, P.F.5
Hofacker, I.L.6
-
48
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31 (2003) 3406-3415
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
49
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews D.H., Sabina J., Zuker M., and Turner D.H. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288 (1999) 911-940
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
50
-
-
21044434205
-
Persistence length of titin from rabbit skeletal muscles measured with scattering and microrheology techniques
-
Di Cola E., Waigh T.A., Larissa J.T., Tskhovrebova L., Houmeida A., Pyckhout-Hintzen W., and Dewhurst C. Persistence length of titin from rabbit skeletal muscles measured with scattering and microrheology techniques. Biophys. J. 88 (2005) 4095-4160
-
(2005)
Biophys. J.
, vol.88
, pp. 4095-4160
-
-
Di Cola, E.1
Waigh, T.A.2
Larissa, J.T.3
Tskhovrebova, L.4
Houmeida, A.5
Pyckhout-Hintzen, W.6
Dewhurst, C.7
-
52
-
-
0024282468
-
Application of the small-angle X-ray scattering technique for the study of equilibrium enzyme-substrate interactions of phenylalanyl-tRNA synthetase from E. coli with tRNAPhe
-
Tuzikov F., Zinoviev V., Vavilin V., Maligin E., Ankilova V., Moor N., and Lavrik O.I. Application of the small-angle X-ray scattering technique for the study of equilibrium enzyme-substrate interactions of phenylalanyl-tRNA synthetase from E. coli with tRNAPhe. FEBS Lett. 232 (1988) 107-110
-
(1988)
FEBS Lett.
, vol.232
, pp. 107-110
-
-
Tuzikov, F.1
Zinoviev, V.2
Vavilin, V.3
Maligin, E.4
Ankilova, V.5
Moor, N.6
Lavrik, O.I.7
-
53
-
-
0034603154
-
Adaptive recognition by nucleic acid aptamers
-
Hermann T., and Patel D.J. Adaptive recognition by nucleic acid aptamers. Science 287 (2000) 820-825
-
(2000)
Science
, vol.287
, pp. 820-825
-
-
Hermann, T.1
Patel, D.J.2
-
54
-
-
25844505794
-
Competitive regulation of modular allosteric aptazymes by a small molecule and oligonucleotide effector
-
Najafi-Shoustari S.H., and Famulok M. Competitive regulation of modular allosteric aptazymes by a small molecule and oligonucleotide effector. RNA 11 (2005) 1514-1520
-
(2005)
RNA
, vol.11
, pp. 1514-1520
-
-
Najafi-Shoustari, S.H.1
Famulok, M.2
|