-
1
-
-
4444346326
-
Estimating rates of alternative splicing in mammals and invertebrates
-
author reply 916-7, 10.1038/ng0904-915, 15340420
-
Kim H, Klein R, Majewski J, Ott J. Estimating rates of alternative splicing in mammals and invertebrates. Nat Genet 2004, 36(9):915-6. author reply 916-7, 10.1038/ng0904-915, 15340420.
-
(2004)
Nat Genet
, vol.36
, Issue.9
, pp. 915-916
-
-
Kim, H.1
Klein, R.2
Majewski, J.3
Ott, J.4
-
2
-
-
33646484347
-
Genomewide comparative analysis of alternative splicing in plants
-
Wang BB, Brendel V. Genomewide comparative analysis of alternative splicing in plants. Proceedings of the National Academy of Sciences 2006, 103(18):7175-7180., http://www.pnas.org/content/103/18/7175.abstract
-
(2006)
Proceedings of the National Academy of Sciences
, vol.103
, Issue.18
, pp. 7175-7180
-
-
Wang, B.B.1
Brendel, V.2
-
3
-
-
34250813107
-
Alternative splicing of pre-messenger RNAs in plants in the genomic era
-
10.1146/annurev.arplant.58.032806.103754, 17222076
-
Reddy ASN. Alternative splicing of pre-messenger RNAs in plants in the genomic era. Annu Rev Plant Biol 2007, 58:267-294. 10.1146/annurev.arplant.58.032806.103754, 17222076.
-
(2007)
Annu Rev Plant Biol
, vol.58
, pp. 267-294
-
-
Reddy, A.S.N.1
-
4
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
10.1146/annurev.biochem.72.121801.161720, 12626338
-
Black DL. Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem 2003, 72:291-336. 10.1146/annurev.biochem.72.121801.161720, 12626338.
-
(2003)
Annu Rev Biochem
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
5
-
-
0347623371
-
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
-
10.1126/science.1090100, 14684825
-
Johnson JM, Castle J, Garrett-Engele P, Kan Z, Loerch PM, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD. Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science 2003, 302(5653):2141-2144. 10.1126/science.1090100, 14684825.
-
(2003)
Science
, vol.302
, Issue.5653
, pp. 2141-2144
-
-
Johnson, J.M.1
Castle, J.2
Garrett-Engele, P.3
Kan, Z.4
Loerch, P.M.5
Armour, C.D.6
Santos, R.7
Schadt, E.E.8
Stoughton, R.9
Shoemaker, D.D.10
-
6
-
-
19944365069
-
Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform
-
10.1016/j.molcel.2004.12.004, 15610736
-
Pan Q, Shai O, Misquitta C, Zhang W, Saltzman AL, Mohammad N, Babak T, Siu H, Hughes TR, Morris QD, Frey BJ, Blencowe BJ. Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform. Mol Cell 2004, 16(6):929-941. 10.1016/j.molcel.2004.12.004, 15610736.
-
(2004)
Mol Cell
, vol.16
, Issue.6
, pp. 929-941
-
-
Pan, Q.1
Shai, O.2
Misquitta, C.3
Zhang, W.4
Saltzman, A.L.5
Mohammad, N.6
Babak, T.7
Siu, H.8
Hughes, T.R.9
Morris, Q.D.10
Frey, B.J.11
Blencowe, B.J.12
-
7
-
-
33745899048
-
Alternative splicing: new insights from global analyses
-
10.1016/j.cell.2006.06.023, 16839875
-
Blencowe BJ. Alternative splicing: new insights from global analyses. Cell 2006, 126:37-47. 10.1016/j.cell.2006.06.023, 16839875.
-
(2006)
Cell
, vol.126
, pp. 37-47
-
-
Blencowe, B.J.1
-
8
-
-
33645760966
-
Unusual intron conservation near tissue-regulated exons found by splicing microarrays
-
10.1371/journal.pcbi.0020004, 1331982, 16424921
-
Sugnet CW, Srinivasan K, Clark TA, O'Brien G, Cline MS, Wang H, Williams A, Kulp D, Blume JE, Haussler D, Ares M. Unusual intron conservation near tissue-regulated exons found by splicing microarrays. PLoS Comput Biol 2006, 2:e4. 10.1371/journal.pcbi.0020004, 1331982, 16424921.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Sugnet, C.W.1
Srinivasan, K.2
Clark, T.A.3
O'Brien, G.4
Cline, M.S.5
Wang, H.6
Williams, A.7
Kulp, D.8
Blume, J.E.9
Haussler, D.10
Ares, M.11
-
9
-
-
0037443035
-
Pre-mRNA splicing and human disease
-
10.1101/gad.1048803, 12600935
-
Faustino NA, Cooper TA. Pre-mRNA splicing and human disease. Genes Dev 2003, 17(4):419-437. 10.1101/gad.1048803, 12600935.
-
(2003)
Genes Dev
, vol.17
, Issue.4
, pp. 419-437
-
-
Faustino, N.A.1
Cooper, T.A.2
-
10
-
-
0036207384
-
Listening to silence and understanding nonsense: exonic mutations that affect splicing
-
10.1038/nrg775, 11967553
-
Cartegni L, Chew SL, Krainer AR. Listening to silence and understanding nonsense: exonic mutations that affect splicing. Nat Rev Genet 2002, 3(4):285-298. 10.1038/nrg775, 11967553.
-
(2002)
Nat Rev Genet
, vol.3
, Issue.4
, pp. 285-298
-
-
Cartegni, L.1
Chew, S.L.2
Krainer, A.R.3
-
11
-
-
2342450548
-
Alternative splicing in disease and therapy
-
10.1038/nbt964, 15122293
-
Garcia-Blanco MA, Baraniak AP, Lasda EL. Alternative splicing in disease and therapy. Nat Biotechnol 2004, 22(5):535-546. 10.1038/nbt964, 15122293.
-
(2004)
Nat Biotechnol
, vol.22
, Issue.5
, pp. 535-546
-
-
Garcia-Blanco, M.A.1
Baraniak, A.P.2
Lasda, E.L.3
-
12
-
-
33847343883
-
Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses
-
10.1111/j.1365-313X.2006.03020.x, 17319848
-
Palusa SG, Ali GS, Reddy ASN. Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses. Plant J 2007, 49(6):1091-1107. 10.1111/j.1365-313X.2006.03020.x, 17319848.
-
(2007)
Plant J
, vol.49
, Issue.6
, pp. 1091-1107
-
-
Palusa, S.G.1
Ali, G.S.2
Reddy, A.S.N.3
-
13
-
-
66949124248
-
Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays
-
10.1111/j.1365-313X.2009.03835.x, 19222804
-
Zeller G, Henz SR, Widmer CK, Sachsenberg T, Rätsch G, Weigel D, Laubinger S. Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays. Plant J 2009, 58(6):1068-1082. 10.1111/j.1365-313X.2009.03835.x, 19222804.
-
(2009)
Plant J
, vol.58
, Issue.6
, pp. 1068-1082
-
-
Zeller, G.1
Henz, S.R.2
Widmer, C.K.3
Sachsenberg, T.4
Rätsch, G.5
Weigel, D.6
Laubinger, S.7
-
14
-
-
74949084336
-
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
-
10.1101/gr.093302.109, 2798830, 19858364
-
Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, Wong WK, Mockler TC. Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res 2010, 20:45-58. 10.1101/gr.093302.109, 2798830, 19858364.
-
(2010)
Genome Res
, vol.20
, pp. 45-58
-
-
Filichkin, S.A.1
Priest, H.D.2
Givan, S.A.3
Shen, R.4
Bryant, D.W.5
Fox, S.E.6
Wong, W.K.7
Mockler, T.C.8
-
15
-
-
4844222571
-
Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences
-
10.1093/nar/gkh845, 521658, 15452276
-
Iida K, Seki M, Sakurai T, Satou M, Akiyama K, Toyoda T, Konagaya A, Shinozaki K. Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences. Nucleic Acids Res 2004, 32(17):5096-5103. 10.1093/nar/gkh845, 521658, 15452276.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.17
, pp. 5096-5103
-
-
Iida, K.1
Seki, M.2
Sakurai, T.3
Satou, M.4
Akiyama, K.5
Toyoda, T.6
Konagaya, A.7
Shinozaki, K.8
-
16
-
-
0034099030
-
The Arabidopsis splicing factor SR1 is regulated by alternative splicing
-
10.1023/A:1006394207479, 10809003
-
Lazar G, Goodman HM. The Arabidopsis splicing factor SR1 is regulated by alternative splicing. Plant Mol Biol 2000, 42(4):571-581. 10.1023/A:1006394207479, 10809003.
-
(2000)
Plant Mol Biol
, vol.42
, Issue.4
, pp. 571-581
-
-
Lazar, G.1
Goodman, H.M.2
-
17
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
187518, 11932250
-
Kent W. BLAT-the BLAST-like alignment tool. Genome Res 2002, 12(4):656-64. 187518, 11932250.
-
(2002)
Genome Res
, vol.12
, Issue.4
, pp. 656-664
-
-
Kent, W.1
-
18
-
-
77049102462
-
An approach to comparing tiling array and high throughput sequencing technologies for genomic transcript mapping
-
10.1186/1756-0500-2-150, 2764720, 19630981
-
Sasidharan R, Agarwal A, Rozowsky J, Gerstein M. An approach to comparing tiling array and high throughput sequencing technologies for genomic transcript mapping. BMC Res Notes 2009, 2:150. 10.1186/1756-0500-2-150, 2764720, 19630981.
-
(2009)
BMC Res Notes
, vol.2
, pp. 150
-
-
Sasidharan, R.1
Agarwal, A.2
Rozowsky, J.3
Gerstein, M.4
-
19
-
-
33750062619
-
Data analysis of alternative splicing microarrays
-
10.1016/j.drudis.2006.09.011, 17055407
-
Cuperlovic-Culf M, Belacel N, Culf AS, Ouellette RJ. Data analysis of alternative splicing microarrays. Drug Discov Today 2006, 11(21-22):983-990. 10.1016/j.drudis.2006.09.011, 17055407.
-
(2006)
Drug Discov Today
, vol.11
, Issue.21-22
, pp. 983-990
-
-
Cuperlovic-Culf, M.1
Belacel, N.2
Culf, A.S.3
Ouellette, R.J.4
-
20
-
-
34548824879
-
An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data
-
10.1186/gb-2007-8-5-r79, 1929135, 17498294
-
Okoniewski MJ, Yates T, Dibben S, Miller CJ. An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data. Genome Biol 2007, 8(5):R79. 10.1186/gb-2007-8-5-r79, 1929135, 17498294.
-
(2007)
Genome Biol
, vol.8
, Issue.5
-
-
Okoniewski, M.J.1
Yates, T.2
Dibben, S.3
Miller, C.J.4
-
21
-
-
48149096726
-
MADS: A new and improved method for analysis of differential alternative splicing by exon-tiling microarrays
-
rna.1070208
-
Xing Y, Stoilov P, Kapur K, Han A, Jiang H, Shen S, Black DL, Wong WH. MADS: A new and improved method for analysis of differential alternative splicing by exon-tiling microarrays. RNA 2008, rna.1070208., http://rnajournal.cshlp.org/cgi/content/abstract/rna.1070208v1
-
(2008)
RNA
-
-
Xing, Y.1
Stoilov, P.2
Kapur, K.3
Han, A.4
Jiang, H.5
Shen, S.6
Black, D.L.7
Wong, W.H.8
-
22
-
-
48249128721
-
FIRMA: a method for detection of alternative splicing from exon array data
-
10.1093/bioinformatics/btn284, 2638867, 18573797
-
Purdom E, Simpson KM, Robinson MD, Conboy JG, Lapuk AV, Speed T. FIRMA: a method for detection of alternative splicing from exon array data. Bioinformatics 2008, 24(15):1707-1714. 10.1093/bioinformatics/btn284, 2638867, 18573797.
-
(2008)
Bioinformatics
, vol.24
, Issue.15
, pp. 1707-1714
-
-
Purdom, E.1
Simpson, K.M.2
Robinson, M.D.3
Conboy, J.G.4
Lapuk, A.V.5
Speed, T.6
-
23
-
-
77249084320
-
Overestimation of alternative splicing caused by variable probe characteristics in exon arrays
-
10.1093/nar/gkp508, 2760813, 19528075
-
Gaidatzis D, Jacobeit K, Oakeley EJ, Stadler MB. Overestimation of alternative splicing caused by variable probe characteristics in exon arrays. Nucleic Acids Res 2009, 37(16):e107. 10.1093/nar/gkp508, 2760813, 19528075.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.16
-
-
Gaidatzis, D.1
Jacobeit, K.2
Oakeley, E.J.3
Stadler, M.B.4
-
24
-
-
33750084381
-
Whole-Genome Microarray in Arabidopsis Facilitates Global Analysis of Retained Introns
-
10.1093/dnares/dsl003, 16980712
-
Ner-Gaon H, Fluhr R. Whole-Genome Microarray in Arabidopsis Facilitates Global Analysis of Retained Introns. DNA Res 2006, 13(3):111-121. 10.1093/dnares/dsl003, 16980712.
-
(2006)
DNA Res
, vol.13
, Issue.3
, pp. 111-121
-
-
Ner-Gaon, H.1
Fluhr, R.2
-
26
-
-
55449125185
-
Support vector machines and kernels for computational biology
-
10.1371/journal.pcbi.1000173, 2547983, 18974822
-
Ben-Hur A, Ong CS, Sonnenburg S, Schölkopf B, Rätsch G. Support vector machines and kernels for computational biology. PLoS Comput Biol 2008, 4(10):e1000173.. 10.1371/journal.pcbi.1000173, 2547983, 18974822.
-
(2008)
PLoS Comput Biol
, vol.4
, Issue.10
-
-
Ben-Hur, A.1
Ong, C.S.2
Sonnenburg, S.3
Schölkopf, B.4
Rätsch, G.5
-
27
-
-
38549144806
-
The Arabidopsis Information Resource (TAIR): gene structure and function annotation
-
10.1093/nar/gkm965, 2238962, 17986450
-
Swarbreck D, Wilks C, Lamesch P, Berardini T, Garcia-Hernandez M, Foerster H, Li D, Meyer T, Muller R, Ploetz L, Radenbaugh A, Singh S, Swing V, Tissier C, Zhang P, Huala E. The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res 2008, 36:D1009-1014. 10.1093/nar/gkm965, 2238962, 17986450.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Swarbreck, D.1
Wilks, C.2
Lamesch, P.3
Berardini, T.4
Garcia-Hernandez, M.5
Foerster, H.6
Li, D.7
Meyer, T.8
Muller, R.9
Ploetz, L.10
Radenbaugh, A.11
Singh, S.12
Swing, V.13
Tissier, C.14
Zhang, P.15
Huala, E.16
-
28
-
-
13444312017
-
RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome
-
539968, 15608280
-
Sakurai T, Satou M, Akiyama K, Iida K, Seki M, Kuromori T, Ito T, Konagaya A, Toyoda T, Shinozaki K. RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome. Nucleic Acids Res 2005, (33 Database):D647-D650. 539968, 15608280.
-
(2005)
Nucleic Acids Res
, Issue.33
-
-
Sakurai, T.1
Satou, M.2
Akiyama, K.3
Iida, K.4
Seki, M.5
Kuromori, T.6
Ito, T.7
Konagaya, A.8
Toyoda, T.9
Shinozaki, K.10
-
29
-
-
0345865005
-
ASD: the Alternative Splicing Database
-
10.1093/nar/gkh030, 308764, 14681360
-
Thanaraj TA, Stamm S, Clark F, Riethoven JJ, Le Texier V, Muilu J. ASD: the Alternative Splicing Database. Nucl Acids Res 2004, 32(suppl_1):D64-69. 10.1093/nar/gkh030, 308764, 14681360., http://nar.oxfordjournals.org/cgi/content/abstract/32/suppl_1/D64
-
(2004)
Nucl Acids Res
, vol.32
, Issue.SUPPL. 1
-
-
Thanaraj, T.A.1
Stamm, S.2
Clark, F.3
Riethoven, J.J.4
Le Texier, V.5
Muilu, J.6
-
30
-
-
33845885526
-
TISA: Tissue-specific Alternative Splicing in Human and Mouse Genes
-
10.1093/dnares/dsl011, 17107969
-
Noh SJ, Lee K, Paik H, Hur CG. TISA: Tissue-specific Alternative Splicing in Human and Mouse Genes. DNA Res 2006, 13(5):229-243. 10.1093/dnares/dsl011, 17107969.
-
(2006)
DNA Res
, vol.13
, Issue.5
, pp. 229-243
-
-
Noh, S.J.1
Lee, K.2
Paik, H.3
Hur, C.G.4
-
31
-
-
40549114298
-
Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts
-
10.1111/j.1365-313X.2007.03392.x, 18088312
-
Simpson CG, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol J, Barta A, Brown JWS. Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts. Plant J 2008, 53(6):1035-1048. 10.1111/j.1365-313X.2007.03392.x, 18088312.
-
(2008)
Plant J
, vol.53
, Issue.6
, pp. 1035-1048
-
-
Simpson, C.G.1
Fuller, J.2
Maronova, M.3
Kalyna, M.4
Davidson, D.5
McNicol, J.6
Barta, A.7
Brown, J.W.S.8
-
32
-
-
43549091611
-
SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays
-
10.1186/gb-2008-9-2-r46, 2374713, 18312629
-
Anton M, Gorostiaga D, Guruceaga E, Segura V, Carmona-Saez P, Pascual-Montano A, Pio R, Montuenga L, Rubio A. SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays. Genome Biology 2008, 9(2):R46. 10.1186/gb-2008-9-2-r46, 2374713, 18312629., http://genomebiology.com/2008/9/2/R46
-
(2008)
Genome Biology
, vol.9
, Issue.2
-
-
Anton, M.1
Gorostiaga, D.2
Guruceaga, E.3
Segura, V.4
Carmona-Saez, P.5
Pascual-Montano, A.6
Pio, R.7
Montuenga, L.8
Rubio, A.9
-
33
-
-
58149182724
-
NCBI GEO: archive for high-throughput functional genomic data
-
10.1093/nar/gkn764, 2686538, 18940857
-
Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Muertter RN, Edgar R. NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res 2009, (37 Database):D885-D890. 10.1093/nar/gkn764, 2686538, 18940857.
-
(2009)
Nucleic Acids Res
, Issue.37
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
Kim, I.F.7
Soboleva, A.8
Tomashevsky, M.9
Marshall, K.A.10
Phillippy, K.H.11
Sherman, P.M.12
Muertter, R.N.13
Edgar, R.14
-
34
-
-
33644864739
-
Inferring global levels of alternative splicing isoforms using a generative model of microarray data
-
10.1093/bioinformatics/btk028, 16403798
-
Shai O, Morris QD, Blencowe BJ, Frey BJ. Inferring global levels of alternative splicing isoforms using a generative model of microarray data. Bioinformatics 2006, 22(5):606-613. 10.1093/bioinformatics/btk028, 16403798.
-
(2006)
Bioinformatics
, vol.22
, Issue.5
, pp. 606-613
-
-
Shai, O.1
Morris, Q.D.2
Blencowe, B.J.3
Frey, B.J.4
-
35
-
-
56749098074
-
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
-
10.1038/ng.259, 18978789
-
Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet 2008, 40(12):1413-1415. 10.1038/ng.259, 18978789.
-
(2008)
Nat Genet
, vol.40
, Issue.12
, pp. 1413-1415
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, B.J.4
Blencowe, B.J.5
-
36
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
10.1038/nature07509, 2593745, 18978772
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. Alternative isoform regulation in human tissue transcriptomes. Nature 2008, 456(7221):470-476. 10.1038/nature07509, 2593745, 18978772.
-
(2008)
Nature
, vol.456
, Issue.7221
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
37
-
-
50649109231
-
Genome-wide analyses of alternative splicing in plants: opportunities and challenges
-
10.1101/gr.053678.106, 18669480
-
Barbazuk WB, Fu Y, McGinnis KM. Genome-wide analyses of alternative splicing in plants: opportunities and challenges. Genome Res 2008, 18(9):1381-1392. 10.1101/gr.053678.106, 18669480.
-
(2008)
Genome Res
, vol.18
, Issue.9
, pp. 1381-1392
-
-
Barbazuk, W.B.1
Fu, Y.2
McGinnis, K.M.3
-
38
-
-
66249120367
-
Human Splicing Finder: an online bioinformatics tool to predict splicing signals
-
10.1093/nar/gkp215, 2685110, 19339519
-
Desmet FO, Hamroun D, Lalande M, Collod-Béroud G, Claustres M, Béroud C. Human Splicing Finder: an online bioinformatics tool to predict splicing signals. Nucleic Acids Res 2009, 37(9):e67. 10.1093/nar/gkp215, 2685110, 19339519.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.9
-
-
Desmet, F.O.1
Hamroun, D.2
Lalande, M.3
Collod-Béroud, G.4
Claustres, M.5
Béroud, C.6
-
39
-
-
0027249595
-
DbEST-database for expressed sequence tags
-
10.1038/ng0893-332, 8401577
-
Boguski MS, Lowe TM, Tolstoshev CM. dbEST-database for expressed sequence tags. Nat Genet 1993, 4(4):332-333. 10.1038/ng0893-332, 8401577.
-
(1993)
Nat Genet
, vol.4
, Issue.4
, pp. 332-333
-
-
Boguski, M.S.1
Lowe, T.M.2
Tolstoshev, C.M.3
-
40
-
-
42149137369
-
Accurate splice site prediction using support vector machines
-
10.1186/1471-2105-8-S10-S7, 2230508, 18269701
-
Sonnenburg S, Schweikert G, Philips P, Behr J, Rätsch G. Accurate splice site prediction using support vector machines. BMC Bioinformatics 2007, 8(Suppl 10):S7. 10.1186/1471-2105-8-S10-S7, 2230508, 18269701.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 10
-
-
Sonnenburg, S.1
Schweikert, G.2
Philips, P.3
Behr, J.4
Rätsch, G.5
-
41
-
-
48249130774
-
At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana
-
10.1186/gb-2008-9-7-r112, 2530869, 18613972
-
Laubinger S, Zeller G, Henz S, Sachsenberg T, Widmer C, Naouar N, Vuylsteke M, Schölkopf B, Rätsch G, Weigel D. At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana. Genome Biology 2008, 9(7):R112. 10.1186/gb-2008-9-7-r112, 2530869, 18613972., http://genomebiology.com/2008/9/7/R112
-
(2008)
Genome Biology
, vol.9
, Issue.7
-
-
Laubinger, S.1
Zeller, G.2
Henz, S.3
Sachsenberg, T.4
Widmer, C.5
Naouar, N.6
Vuylsteke, M.7
Schölkopf, B.8
Rätsch, G.9
Weigel, D.10
-
42
-
-
0037348718
-
Large-Scale Identification of Single-Feature Polymorphisms in Complex Genomes
-
10.1101/gr.541303, 430246, 12618383
-
Borevitz J, Liang D, Plou e D, Chang H, Zhu T, Weigel D, Berry C, Winzeler E, Chory J. Large-Scale Identification of Single-Feature Polymorphisms in Complex Genomes. Genome Res 2003, 13(3):513-523. 10.1101/gr.541303, 430246, 12618383., http://www.genome.org/cgi/content/abstract/13/3/513
-
(2003)
Genome Res
, vol.13
, Issue.3
, pp. 513-523
-
-
Borevitz, J.1
Liang, D.2
Plou e, D.3
Chang, H.4
Zhu, T.5
Weigel, D.6
Berry, C.7
Winzeler, E.8
Chory, J.9
-
43
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
10.1093/bioinformatics/19.2.185, 12538238
-
Bolstad B, Irizarry R, Astrand M, Speed T. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19(2):185-193. 10.1093/bioinformatics/19.2.185, 12538238.
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 185-193
-
-
Bolstad, B.1
Irizarry, R.2
Astrand, M.3
Speed, T.4
-
44
-
-
0034649566
-
Analysis of the Genome Sequence of the Flowering Plant Arabidopsis thaliana
-
10.1038/35048692, 11130711
-
Initiative TAG. Analysis of the Genome Sequence of the Flowering Plant Arabidopsis thaliana. Nature 2000, 408(6814):796-815. 10.1038/35048692, 11130711.
-
(2000)
Nature
, vol.408
, Issue.6814
, pp. 796-815
-
-
Initiative, T.A.G.1
-
45
-
-
34547108086
-
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana
-
10.1126/science.1138632, 17641193
-
Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, Shinn P, Warthmann N, Hu TT, Fu G, Hinds DA, Chen H, Frazer KA, Huson DH, Schölkopf B, Nordborg M, Rätsch G, Ecker JR, Weigel D. Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science 2007, 317(5836):338-342. 10.1126/science.1138632, 17641193.
-
(2007)
Science
, vol.317
, Issue.5836
, pp. 338-342
-
-
Clark, R.M.1
Schweikert, G.2
Toomajian, C.3
Ossowski, S.4
Zeller, G.5
Shinn, P.6
Warthmann, N.7
Hu, T.T.8
Fu, G.9
Hinds, D.A.10
Chen, H.11
Frazer, K.A.12
Huson, D.H.13
Schölkopf, B.14
Nordborg, M.15
Rätsch, G.16
Ecker, J.R.17
Weigel, D.18
-
46
-
-
40549109649
-
Transcript normalization and segmentation of tiling array data
-
Zeller G, Henz SR, Laubinger S, Weigel D, Rätsch G. Transcript normalization and segmentation of tiling array data. Pac Symp Biocomput 2008, 527-538.
-
(2008)
Pac Symp Biocomput
, pp. 527-538
-
-
Zeller, G.1
Henz, S.R.2
Laubinger, S.3
Weigel, D.4
Rätsch, G.5
-
47
-
-
0003697643
-
-
Incline Village, Nevada, CPLEX Optimization Incorporated
-
CPLEX Optimization Incorporated Using the CPLEX Callable Library 1994, Incline Village, Nevada, CPLEX Optimization Incorporated.
-
(1994)
Using the CPLEX Callable Library
-
-
-
48
-
-
79952360093
-
RNA-Seq read alignments with PALMapper
-
Jean G, Kahles A, Sreedharan VT, Bona FD, Rätsch G. RNA-Seq read alignments with PALMapper. Curr Protoc Bioinformatics 2010, Chapter 11:Unit 11.6.
-
(2010)
Curr Protoc Bioinformatics
, vol.Chapter 11
-
-
Jean, G.1
Kahles, A.2
Sreedharan, V.T.3
Bona, F.D.4
Rätsch, G.5
|