-
1
-
-
0037012922
-
Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays
-
Clark,T.A., Sugnet,C.W. and Ares,M. (2002) Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays. Science, 296, 907-910.
-
(2002)
Science
, vol.296
, pp. 907-910
-
-
Clark, T.A.1
Sugnet, C.W.2
Ares, M.3
-
2
-
-
29144480020
-
ANOSVA: a statistical method for detecting splice variation from expression data
-
Cline,M.S., Blume,J., Cawley,S., Clark,T.A., Hu,J.S., Lu,G., Salomonis,N., Wang,H. and Williams,A. (2005) ANOSVA: a statistical method for detecting splice variation from expression data. Bioinformatics, 21(Suppl. 1), i107-i115.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Cline, M.S.1
Blume, J.2
Cawley, S.3
Clark, T.A.4
Hu, J.S.5
Lu, G.6
Salomonis, N.7
Wang, H.8
Williams, A.9
-
3
-
-
44649126097
-
Global analysis of aberrant pre-mRNA splicing in glioblastoma using exon expression arrays
-
Cheung,H.C., Baggerly,K.A., Tsavachidis,S., Bachinski,L.L.,Neubauer,V.L., Nixon,T.J., Aldape,K.D., Cote,G.J. and Krahe,R. (2008) Global analysis of aberrant pre-mRNA splicing in glioblastoma using exon expression arrays. BMC Genomics, 9, 216.
-
(2008)
BMC Genomics
, vol.9
, pp. 216
-
-
Cheung, H.C.1
Baggerly, K.A.2
Tsavachidis, S.3
Bachinski, L.L.4
Neubauer, V.L.5
Nixon, T.J.6
Aldape, K.D.7
Cote, G.J.8
Krahe, R.9
-
4
-
-
48149096726
-
MADS: a new and improvedv method for analysis of differential alternative splicing by exon-tiling microarrays
-
Xing,Y., Stoilov,P., Kapur,K., Han,A., Jiang,H., Shen,S., Black,D.L. and Wong,W.H. (2008) MADS: a new and improvedv method for analysis of differential alternative splicing by exon-tiling microarrays. RNA, 14, 1470-1479.
-
(2008)
RNA
, vol.14
, pp. 1470-1479
-
-
Xing, Y.1
Stoilov, P.2
Kapur, K.3
Han, A.4
Jiang, H.5
Shen, S.6
Black, D.L.7
Wong, W.H.8
-
5
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection
-
Li,C. and Wong,W.H. (2001) Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc. Natl Acad. Sci. USA, 98, 31-36.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
6
-
-
48249128721
-
FIRMA: a method for detection of alternative splicing from exon array data
-
Purdom,E., Simpson,K.M., Robinson,M.D., Conboy,J.G., Lapuk,A.V. and Speed,T.P. (2008) FIRMA: a method for detection of alternative splicing from exon array data. Bioinformatics, 24, 1707-1714.
-
(2008)
Bioinformatics
, vol.24
, pp. 1707-1714
-
-
Purdom, E.1
Simpson, K.M.2
Robinson, M.D.3
Conboy, J.G.4
Lapuk, A.V.5
Speed, T.P.6
-
7
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry,R.A., Hobbs,B., Collin,F., Beazer-Barclay,Y.D., Antonellis,K.J., Scherf,U. and Speed,T.P. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics, 4, 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
8
-
-
40149106038
-
Comprehensive analysis of affymetrix exon arrays using BioConductor
-
Okoniewski,M.J. and Miller,C.J. (2008) Comprehensive analysis of affymetrix exon arrays using BioConductor. PLoS Comput. Biol., 4, e6.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Okoniewski, M.J.1
Miller, C.J.2
-
9
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-seq
-
Mortazavi,A., Williams,B.A., McCue,K., Schaeffer,L. and Wold,B. (2008) Mapping and quantifying mammalian transcriptomes by RNA-seq. Nat. Methods, 5, 621-628.
-
(2008)
Nat. Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
10
-
-
37349039355
-
Computational analysis of small RNA cloning data
-
Berninger,P., Gaidatzis,D., van Nimwegen,E. and Zavolan,M. (2008) Computational analysis of small RNA cloning data. Methods, 44, 13-21.
-
(2008)
Methods
, vol.44
, pp. 13-21
-
-
Berninger, P.1
Gaidatzis, D.2
van Nimwegen, E.3
Zavolan, M.4
-
11
-
-
40049104732
-
SOAP: short oligonucleotide alignment program
-
Li,R., Li,Y., Kristiansen,K. and Wang,J. (2008) SOAP: short oligonucleotide alignment program. Bioinformatics, 24, 713-714.
-
(2008)
Bioinformatics
, vol.24
, pp. 713-714
-
-
Li, R.1
Li, Y.2
Kristiansen, K.3
Wang, J.4
-
12
-
-
34547632484
-
Discovery of tissue-specific exons using comprehensive human exon microarrays
-
Clark,T.A., Schweitzer,A.C., Chen,T.X., Staples,M.K., Lu,G., Wang,H., Williams,A. and Blume,J.E. (2007) Discovery of tissue-specific exons using comprehensive human exon microarrays. Genome Biol., 8, R64.
-
(2007)
Genome Biol.
, vol.8
-
-
Clark, T.A.1
Schweitzer, A.C.2
Chen, T.X.3
Staples, M.K.4
Lu, G.5
Wang, H.6
Williams, A.7
Blume, J.E.8
-
13
-
-
34250795169
-
Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon expression arrays
-
French,P.J., Peeters,J., Horsman,S., Duijm,E., Siccama,I., van den Bent,M.J., Luider,T.M., Kros,J.M., van der Spek,P. and Smitt,P.A.S. (2007) Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon expression arrays. Cancer Res., 67, 5635-5642.
-
(2007)
Cancer Res.
, vol.67
, pp. 5635-5642
-
-
French, P.J.1
Peeters, J.2
Horsman, S.3
Duijm, E.4
Siccama, I.5
van den Bent, M.J.6
Luider, T.M.7
Kros, J.M.8
van der Spek, P.9
Smitt, P.A.S.10
-
14
-
-
38649090044
-
Genome-wide analysis of transcript isoform variation in humans
-
Kwan,T., Benovoy,D., Dias,C., Gurd,S., Provencher,C., Beaulieu,P., Hudson,T.J., Sladek,R. and Majewski,J. (2008) Genome-wide analysis of transcript isoform variation in humans. Nat. Genet., 40, 225-231.
-
(2008)
Nat. Genet.
, vol.40
, pp. 225-231
-
-
Kwan, T.1
Benovoy, D.2
Dias, C.3
Gurd, S.4
Provencher, C.5
Beaulieu, P.6
Hudson, T.J.7
Sladek, R.8
Majewski, J.9
-
15
-
-
42449089029
-
Coupling transcription and alternative splicing
-
Kornblihtt,A.R. (2007) Coupling transcription and alternative splicing. Adv. Exp. Med. Biol., 623, 175-189.
-
(2007)
Adv. Exp. Med. Biol.
, vol.623
, pp. 175-189
-
-
Kornblihtt, A.R.1
-
16
-
-
41249097678
-
Experimental comparison and evaluation of the Affymetrix exon and U133Plus2 GeneChip arrays
-
Abdueva,D., Wing,M.R., Schaub,B. and Triche,T.J. (2007) Experimental comparison and evaluation of the Affymetrix exon and U133Plus2 GeneChip arrays. PLoS ONE, 2, e913.
-
(2007)
PLoS ONE
, vol.2
-
-
Abdueva, D.1
Wing, M.R.2
Schaub, B.3
Triche, T.J.4
-
17
-
-
0038729666
-
A model of molecular interactions on short oligonucleotide microarrays
-
Zhang,L., Miles,M.F. and Aldape,K.D. (2003) A model of molecular interactions on short oligonucleotide microarrays. Nat. Biotechnol., 21, 818-821
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 818-821
-
-
Zhang, L.1
Miles, M.F.2
Aldape, K.D.3
-
18
-
-
34547631469
-
Heritability of alternative splicing in the human genome
-
Kwan,T., Benovoy,D., Dias,C., Gurd,S., Serre,D., Zuzan,H., Clark,T.A., Schweitzer,A., Staples,M.K., Wang,H. et al. (2007) Heritability of alternative splicing in the human genome. Genome Res., 17, 1210-1218.
-
(2007)
Genome Res.
, vol.17
, pp. 1210-1218
-
-
Kwan, T.1
Benovoy, D.2
Dias, C.3
Gurd, S.4
Serre, D.5
Zuzan, H.6
Clark, T.A.7
Schweitzer, A.8
Staples, M.K.9
Wang H. et, al.10
-
19
-
-
56649103899
-
Gene expression and isoform variation analysis using Affymetrix Exon Arrays
-
Bemmo,A., Benovoy,D., Kwan,T., Gaffney,D.J., Jensen,R.V. and Majewski,J. (2008) Gene expression and isoform variation analysis using Affymetrix Exon Arrays. BMC Genomics, 9, 529.
-
(2008)
BMC Genomics
, vol.9
, pp. 529
-
-
Bemmo, A.1
Benovoy, D.2
Kwan, T.3
Gaffney, D.J.4
Jensen, R.V.5
Majewski, J.6
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