Strong genetic differentiation among east Atlantic populations of the sword razor shell (Ensis siliqua) assessed with mtDNA and RAPD markers

Helgoland Marine Research

Volumn 65, Issue 1, 2011, Pages 81-89

  Arias, Alberto ^a   Fernández Moreno, Mercedes ^a   Fernández Tajes, Juan ^a   Gaspar, Miguel B ^b   Méndez, Josefina ^a  

^a UNIVERSITY OF A CORUÑA   (Spain)

^b INSTITUTO PORTUGUÊS DO MAR E DA ATMOSFERA   (Portugal)

Author keywords

Genetic variability; PCR RFLPs 16S rRNA; Population structure; RAPDs

Indexed keywords

BIOMARKER; BIVALVE; DNA; GENETIC DIFFERENTIATION; GENETIC VARIATION; PHENOTYPE; POPULATION GENETICS; POPULATION STRUCTURE; RNA; SHELL;

IRELAND; PORTUGAL; SPAIN;

BIVALVIA; ENSIS MINOR; ENSIS SILIQUA;

EID: 79951550420     PISSN: 1438387X     EISSN: 14383888     Source Type: Journal    
DOI: 10.1007/s10152-010-0203-6     Document Type: Article

References (51)

1. Aranishi F, Okimoto T (2004) Genetic relationship between cultured populations of Pacific oyster revealed by RAPD analysis. J Appl Genet 45: 435-443.
2. Barreiro R, Couceiro L, Quintela M, Ruiz JM (2006) Population genetic structure of the prosobranch Nassarius reticulatus (L.) in a ria seascape (NW Iberian Peninsula) as revealed by RAPD analysis. Mar Biol 148: 1051-1060.
3. Beaugrand G, Ibanez F, Lindley JA (2001) Geographical distribution and seasonal and diel changes in the diversity of calanoid copepods in the North Atlantic and North Sea. Mar Ecol Prog Ser 219: 189-203.
4. Beaumont AR, Zouros E (1991) Genetics of scallops. In: Shumway SE (ed) Scallops: biology, ecology and aquaculture. Elsevier, Amsterdam, pp 585-617.
5. Benzie JAH, Williams ST (1992) Genetic-structure of giant clam (Tridacna maxima) populations from reefs in the Western Coral Sea. Coral Reefs 11: 135-141.
6. Buroker N (1983) Genetic differentiation and population structure of the American oyster Crassostrea virginica (Gmelin) in Chesapeake Bay. J Shellfish Res 3: 153-167.
7. Casu M, Maltagliati F, Cossu P, Lai T, Galletti MC, Castelli A, Commito JA (2005) Fine-grained spatial genetic structure in the bivalve Gemma gemma from Maine and Virginia (USA), as revealed by inter-simple sequence repeat markers. J Exp Mar Biol Ecol 325: 46-54.
8. De Wolf H, Backeljau T, Verhagen R (1998) Congruence between allozyme and RAPD data in assessing macrogeographical genetic variation in the periwinkle Littorina striata (Mollusca, Gastropoda). Heredity 81: 486-492.
9. Ehrich D, Gaudeul M, Assefa A, Koch MA, Mummenhoff K, Nemomissa S, Consortium I, Brochmann C (2007) Genetic consequences of Pleistocene range shifts: contrast between the Arctic, the Alps and the East African mountains. Mol Ecol 16: 2542-2559.
10. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620.
11. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3. 0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1: 50.
12. Fernández-Moreno M, Arias-Pérez A, Freire R, Méndez J (2008) Genetic analysis of Aequipecten opercularis and Mimachlamys varia (Bivalvia: Pectinidae) in several Atlantic and Mediterranean localities, revealed by mitochondrial PCR-RFLPs: a preliminary study. Aquac Res 39: 474-481.
13. Fernández-Tajes J, Gaspar M, Martinez-Patino D, McDonough N, Roberts D, Gonzalez-Tizon A, Martinez-Lage A, Mendez J (2007) Genetic variation of the razor clam Ensis siliqua (Jeffreys, 1875) along the European coast based on random amplified polymorphic DNA markers. Aquac Res 38: 1205-1212.
14. Ferreira JG, Hawkins AJS, Monteiro P, Moore H, Service M, Pascoe PL, Ramos L, Sequeira A (2008) Integrated assessment of ecosystem-scale carrying capacity in shellfish growing areas. Aquaculture 275: 138-151.
15. Gaspar MB, Monteiro CC (1998) Reproductive cycles of the razor clam Ensis siliqua and the clam Venus striatula off Vilamoura, southern Portugal. J Mar Biol Assoc U K 78: 1247-1258.
16. Gaspar MB, Castro M, Monteiro CC (1999) Effect of tooth spacing and mesh size on the catch of the Portuguese clam and razor clam dredge. ICES J Mar Sci 56: 103-110.
17. González Ittig RE, Gardenal CN (2002) Haplotype diversity of the mitochondrial DNA D-loop region in Calomys musculinus (Rodentia, Muridae) detected by PCR-RFLP. Biochem Genet 40: 293-302.
18. Guerra Díaz A, Gabín Sánchez C (2008) Capítulo 11: Navajas y longueirones comerciales en España. In: Guerra Díaz A, Lodeiros Seijo C (eds) Navajas y longueirones: biología, pesquerías y cultivo, 1st edn. Xunta de Galicia, Consellería de Pesca e Asuntos Marítimos, pp 273-293.
19. Hartl DL, Clark AG (1989) Principles of population genetics. Sinauer Associates, Sunderland, Massachusetts.
20. Heipel DA, Bishop JDD, Brand AR (1999) Mitochondrial DNA variation among open-sea and enclosed populations of the scallop Pecten maximus in western Britain. J Mar Biol Assoc U K 79: 687-695.
21. Holmes SP, Miller N (2006) Aspects of the ecology and population genetics of the bivalve Corbula gibba. Mar Ecol Prog Ser 315: 129-140.
22. Holmes SP, Witbaard R, van der Meer J (2003) Phenotypic and genotypic population differentiation in the bivalve mollusc Arctica islandica: results from RAPD analysis. Mar Ecol Prog Ser 254: 163-176.
23. Huang BX, Peakall R, Hanna PJ (2000) Analysis of genetic structure of blacklip abalone (Haliotis rubra) populations using RAPD, minisatellite and microsatellite markers. Mar Biol 136: 207-216.
24. Karl SA, Avise JC (1992) Balancing selection at allozyme loci in oysters-implications from nuclear RFLPs. Science 256: 100-102.
25. Kong X, Yu Z, Liu Y, Chen L (2003) Intraspecific genetic variation in mitochondrial 16S ribosomal gene of Zhikong scallop Chlamys farreri. J Shellfish Res 22: 655-660.
26. Luttikhuizen PC, Drent J, van Delden W, Piersma T (2003) Spatially structured genetic variation in a broadcast spawning bivalve: quantitative vs. molecular traits. J Evol Biol 16: 260-272.
27. Ma XL, Cowles DL, Carter RL (2000) Effect of pollution on genetic diversity in the bay mussel Mytilus galloprovincialis and the acorn barnacle Balanus glandula. Mar Environ Res 50: 559-563.
28. Mahidol C, Na-Nakorn U, Sukmanomon S, Taniguchi N, Nguyen TTT (2007) Mitochondrial DNA diversity of the Asian moon scallop, Amusium pleuronectes (pectinidae), in Thailand. Mar Biotechnol 9: 352-359.
29. Nagashima K, Sato M, Kawamata K, Nakamura A, Ohta T (2005) Genetic structure of Japanese scallop population in Hokkaido, analyzed by mitochondrial haplotype distribution. Mar Biotechnol 7: 1-10.
30. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York.
31. Palumbi SR (1996) Nucleic acids II: the polymerase chain reaction. In: Hillis DM, Moritz C, Mable BK (eds) Molecular systematics, 2nd edn. Sinauer Associates, Sunderland, Mass, pp 205-247.
32. Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 288-295.
33. Peliz A, Marchesiello P, Dubert J, Marta-Almelda M, Roy C, Queiroga H (2007) A study of crab larvae dispersal on the Western Iberian Shelf: physical processes. J Mar Syst 68: 215-236.
34. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
35. Raymond M, Rousset F (1995) An exact test for population differentiation. Evolution 49: 1280-1283.
36. Reeb CA, Avise JC (1990) A genetic discontinuity in a continuously distributed species: mitochondrial-DNA in the American oyster, Crassostrea virginica. Genetics 124: 397-406.
37. Rice WR (1989) Analyzing tables of statistical tests. Evolution 43: 223-225.
38. Ridgway G (2001) Interpopulation variation in blue mussels. Mytilus edulis L., over short distances. Sarsia 86: 157-161.
39. Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW (2002) Genetic structure of human populations. Science 298: 2381-2385.
40. Saavedra C, Pena JB (2004) Phylogenetic relationships of commercial European and Australasian king scallops (Pecten spp.) based on partial 16S ribosomal RNA gene sequences. Aquaculture 235: 153-166.
41. Santos AMP, Peliz A, Dubert J, Oliveira PB, Angelico MM, Re P (2004) Impact of a winter upwelling event on the distribution and transport of sardine (Sardina pilchardus) eggs and larvae off western Iberia: a retention mechanism. Cont Shelf Res 24: 149-165.
42. Santos AMP, Chicharo A, Dos Santos A, Moita T, Oliveira PB, Peliz A, Re P (2007) Physical-biological interactions in the life history of small pelagic fish in the Western Iberia upwelling ecosystem. Prog Oceanogr 74: 192-209.
43. Shanks AL, Brink L (2005) Upwelling, downwelling, and cross-shelf transport of bivalve larvae: test of a hypothesis. Mar Ecol Prog Ser 302: 1-12.
44. Skibinski DOF, Beardmore JA, Cross TF (1983) Aspects of the population-genetics of Mytilus (Mytilidae, Mollusca) in the British-Isles. Biol J Linn Soc 19: 137-183.
45. R Development Core Team (2009) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL http://www. R-project. org.
46. Toro JE, Ojeda JA, Vergara AM (2004) The genetic structure of Mytilus chilensis (Hupe 1854) populations along the Chilean coast based on RAPDs analysis. Aquacult Res 35: 1466-1471.
47. Vadopalas B, Leclair LL, Bentzen P (2004) Microsatellite and allozyme analyses reveal few genetic differences among spatially distinct aggregations of geoduck clams (Panopea abrupta, Conrad 1849). J Shellfish Res 23: 693-706.
48. Von Cosel R, Dörjes J, Mühlenhardt-Siegel U (1982) Die amerikanische Schwertmuschel Ensis directus (Conrad) in der Deutschen Bucht. I. Zoogeographie und Taxonomie im Vergleich mit den einheimischen Schwertmuschel-Arten. Senckenber Marit 14: 147-173.
49. Welsh J, McClelland M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18: 7213-7218.
50. Wilding CS, Beaumont AR, Latchford JW (1997) Mitochondrial DNA variation in the scallop Pecten maximus (L) assessed by a PCR-RFLP method. Heredity 79: 178-189.
51. Yeh FC, Yang RC, Boyle TBJ, Ye ZH, Mao JX (1997) POPGENE, the user-friendly shareware for population genetic analysis. Molecular Biology and Biotechnology Center, University of Alberta, Canada.