Phylogenetic relationships of commercial European and Australasian king scallops (Pecten spp.) based on partial 16S ribosomal RNA gene sequences

Aquaculture

Volumn 235, Issue 1-4, 2004, Pages 153-166

  Saavedra, Carlos ^a   Peña, Juan B ^a  

^a CSIC Instituto de Acuicultura de Torre de la Sal IATS   (Spain)

Author keywords

16S rRNA; Mitochondrial DNA; Pecten; Phylogeny; Scallop

Indexed keywords

BIVALVE; MITOCHONDRIAL DNA; PHYLOGENY;

AUSTRALASIA; EURASIA; EUROPE;

BIVALVIA; PECTEN; PECTEN JACOBAEUS; PECTEN MAXIMUS; PECTEN SP.; PECTINIDAE; VICTORIA;

EID: 2442474102     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0044-8486(03)00442-3     Document Type: Article

References (50)

1. AFMA Fishery Assessment Report - Bass Strait Central Zone Scallop Fishery. 2002;Australian Fisheries Management Authority, Canberra
2. Annala, J.H., Sullivan, K.J., O'Brien, C.J., Smith, N.W.McL., Varian, S.J.A., 2002. Report from the Fishery Assessment Plenary, May 2002: stock assessments and yield estimates. 640 pp. Unpublished report held in NIWA Library, Wellington. Available at http://www.fish.govt.nz/sustainability/ research/assessment/plenaryreport/index.htm.
3. Ansell A.D., Dao J.-C., Mason J. Three European scallops: Pecten maximus, Chlamys (Aequipecten opercularis, and C. (Chlamys) varia. Shumway S.E. Scallops: Biology, Ecology and Aquaculture. 1991;715-751 Elsevier, Amsterdam
4. Berry A.J., Ajoka J.W., Kreitman M. Lack of polymorphism in the Drosophila fourth chromosome resulting from selection. Genetics. 129:1991;1111-1117
5. Beu A., Darragh T.A. Revision of southern Australian Cenozoic fossil Pectinidae (Mollusca: Bivalvia). Proc. R. Soc. Victoria. 113:2001;1-205
6. Brand A.R. Scallop ecology: distributions and behaviour. Shumway S.E. Scallops: Biology, Ecology and Aquaculture. 1991;517-583 Elsevier, Amsterdam
7. Bull M.F. New Zealand. Shumway S.E. Scallops: Biology, Ecology and Aquaculture. 1991;853-859 Elsevier, Amsterdam
8. Canapa A., Barucca M., Marinelli A., Olmo E. Molecular data from the 16S rRNA gene for the phylogeny of Pectinidae (Mollusca: Bivalvia). J. Mol. Evol. 50:2000;93-97
9. Cochard J.C., Devauchelle N. Spawning, fecundity and larval survival and growth in relation to controlled conditioning in native and transplanted populations of Pecten maximus (L.): evidence for the existence of separate stocks. J. Exp. Mar. Biol. Ecol. 169:1993;41-56
10. Dercourt J., Zonenshein L.P., Rocou L.E., Kazmin V.G., Le Pichon X., Knipper A.L., Grandjacquet C., Sbortschikov I.M., Geyssant J., Lepvier C., Pechersky D.H., Boulin J., Sibouet J.-C., Savostin L.A., Sorokhtin O., Westphal M., Bazhenov M.L., Lauer J.P., Biju-Duval B., Monin A.S. Geological evolution of the Tethys belt from the Atlantic to the Pamirs since the Lias. Tectonophysics. 123:1986;241-315
11. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:1985;783-791
12. Fleming C.A. The genus Pecten in New Zealand. N. Z. Geol. Surv. Paleontol. Bull. 26:1957;1-69
13. Gosling E.M. Systematics and geographic distribution of Mytilus. Gosling E. The Mussel Mytilus: Ecology, Physiology, Genetics and Culture. 1992;1-20 Elsevier, Amsterdam
14. Gwyther D., Cropp D.A., Joll L.M., Dredge M.C.L. Australia. Shumway S.E. Scallops: Biology, Ecology and Aquaculture. 1991;835-851 Elsevier, Amsterdam
15. Gyllensten U., Wilson A. Interspecific mitochondrial DNA transfer and the colonization of Scandinavia by mice. Genet. Res. 49:1987;25-29
16. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids. Symp. Ser. 41:1999;95-98
17. Hendy M.D., Penny D. Branch and bound algorithms to determine minimal evolutionary trees. Math. Biosci. 59:1982;277-290
18. Hilbish T.J., Mullinax A., Dolven S.I., Meyer A., Koehn R.K., Rawson P.D. Origin of the antitropical distribution pattern in marine mussels (Mytilus spp.): routes and timing of transequatorial migration. Mar. Biol. 136:2000;69-77
19. Hoeh W.R., Stewart D.T., Sutherland B.W., Zouros E. Cytochrome c oxidase sequence comparisons suggest an unusually high rate of mitochondrial DNA evolution in Mytilus (Mollusca: Bivalvia). Mol. Biol. Evol. 13:1996;418-421
20. Huvet A., Lapègue S., Magoulas A., Boudry P. Mitochondrial and nuclear DNA phylogeography of Crassostrea angulata, the Portuguese oyster endangered in Europe. Conserv. Genet. 1:2000;251-262
21. Jozefowicz C.J., Ó Foighil D. Phylogenetic analysis of southern hemisphere flat oysters based on partial mitochondrial 16S rDNA gene sequences. Mol. Phylogenet. Evol. 10:1998;426-435
22. Kilburn R.N., Dijkstra H.H. A new species of Pecten Muller, 1776, from south Africa, with a note on "Pecten sulcicostatus var. casa" van Bruggen, 1961. Ann. Natal. Mus. 36:1995;271-279
23. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of DNA sequences. J. Mol. Evol. 16:1980;111-120
24. Kumar S., Tamura K., Jakobsen I.B., Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics. 17(12):2001;1244-1245
25. Li W.-H. Molecular Evolution. 1997;Sinauer, Sunderland
26. Miller S.A., Dykes D.D., Polesky H.F. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 16:1988;1215
27. Moore R.C. Treatise on invertebrate palaeontology. Part N. Vol. 1. Mollusca 6, Bivalvia. 1969;Geological Society of America and University of Kansas, Kansas
28. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics. 89:1978;583-590
29. Nei M., Kumar S. Molecular Evolution and Phylogenetics. 2000;Oxford Univ. Press, New York
30. O'Connor S.J., Heasman M.P., O'Connor W.A. Evaluation of alternative suspended culture methods for the commercial scallop, Pecten fumatus Reeve. Aquaculture. 171:1999;237-250
31. Ó Foighil D., Gaffney P.M., Hilbish T.J. Differences in mitochondrial 16S ribosomal gene sequences allow discrimination among American [Crassostrea virginica (Gmelin)] and Asian [C. gigas (Thunberg) C. ariakensis Wakiya] oyster species. J. Exp. Mar. Biol. Ecol. 192:1995;211-220
32. Ó Foighil D., Gaffney P.M., Wilbur A.E., Hilbish T.J. Mitochondrial cytochrome oxidase I gene sequences support and Asian origin for the Portuguese oyster Crassostrea angulata. Mar. Biol. 131:1998;497-503
33. Oresanz J.M., Parma A.M., Iribarne O.O. Population dynamics and management of natural stocks. Shumway S.E. Scallops: Biology, Ecology and Aquaculture. 1991;625-713 Elsevier, Amsterdam
34. Palumbi S.R. Nucleic acids II: the polymerase chain reaction. Hillis D.M., Moritz C., Mable B.K. Molecular systematics. 2nd ed. 1996;205-247 Sinauer, Sunderland
35. Rawson P.D., Hilbish T.J. Evolutionary relationships among the male and female mitochondrial DNA lineages in the Mytilus edulis species complex. Mol. Biol. Evol. 12:1995;893-901
36. Renzoni A. Italy. Shumway S.E. Scallops: Biology, Ecology and Aquaculture. 1991;777-787 Elsevier, Amsterdam
37. Ríos C., Sanz S., Saavedra C., Peña J.B. Allozyme variation in populations of scallops, Pecten jacobaeus (L.) and P. maximus (L.), across the Almeria-Oran front. J. Exp. Mar. Biol. Ecol. 267:2002;223-244
38. Rombouts A. Guidebook to Pecten Shells. 1991;Crawford House Press, Bathurst
39. Rögl F. Palaeogeographic considerations for Mediterranean and Paratethys seaways (Oligocene to Miocene). Ann. Nat. Mus. Wien. 99A:1998;279-310
40. Rozas J., Rozas R. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics. 15:1999;174-175
41. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425
42. Schneider J.A., Ó Foighil D. Phylogeny of giant clams (Cardiidae: Tridacninae) based on partial mitochondrial 16S rRNA gene sequences. Mol. Phylogenet. Evol. 13:1999;59-66
43. Steininger F.F., Rögl F. Paleogeography and palinspatic reconstruction of the Neogene of the Mediterranean and Paratethys. Dixon J.E., Robertosn A.H.F. The geological evolution of eastern Mediterranean. Geol. Soc. Spec. Pub. vol. 17:1984;659-668 Blackwell, Oxford
44. Stepien C.A., Hubers A.N., Skidmore A.L. Diagnostic genetic markers and evolutionary relationships among invasive Dreissenoid and Corbiculoid Bivalves in North America: phylogenetic signal from mitochondrial 16S rDNA. Mol. Phylogenet. Evol. 13:1999;31-49
45. Swofford D.L. PAUP*: Phylogenetic Analysis Using Parsimony (and Other Methods). 1998;Sinauer Associates, Sunderland
46. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680
47. Vermeij G. Trans-equatorial connections between biotas in the temperate eastern Atlantic. Mar. Biol. 112:1992;343-348
48. Waller T.R. Evolutionary relationships among commercial scallops (Mollusca: Bivalvia:Pectinidae). Shumway S.E. Scallops: Biology, Ecology and Aquaculture. 1991;1-73 Elsevier, Amsterdam
49. Wilding C.S., Beaumont A.R., Lachtford J.W. Are Pecten maximus and Pecten jacobaeus different species? J. Mar. Biol. Assoc. U.K. 79:1999;949-952
50. Woodburn L. Genetic variation in southern Australasian Pecten. Dredge M.L.C., Zacharin W.F., Joll L.M. Proceedings of the Australasian Scallop Workshop. 1988;226-240 Tasmanian Government Printer, Hobart